RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SASH3O75995 380 aa8.88□□□□□ -0.99
CD44-239ENST00000639002 MAP3K6O95382 1288 aa8.88□□□□□ -0.99
CD44-239ENST00000639002 EPB42P16452 691 aa8.88□□□□□ -0.99
CD44-239ENST00000639002 BAG6P46379 1132 aa8.88□□□□□ -0.99
CD44-239ENST00000639002 MKNK1Q9BUB5 465 aa8.88□□□□□ -0.99
CD44-239ENST00000639002 C11orf16Q9NQ32 467 aa8.88□□□□□ -0.99
CD44-239ENST00000639002 KCNMB2Q9Y691 235 aa8.88□□□□□ -0.99
CD44-239ENST00000639002 EGFRP00533 1210 aa8.87□□□□□ -0.99
CD44-239ENST00000639002 SPATA31C1P0DKV0 1188 aa8.87□□□□□ -0.99
CD44-239ENST00000639002 NAA30Q147X3 362 aaPredicted RBP8.87□□□□□ -0.99
CD44-239ENST00000639002 C16orf46Q6P387 395 aa8.87□□□□□ -0.99
CD44-239ENST00000639002 NUDT8Q8WV74 236 aa8.87□□□□□ -0.99
CD44-239ENST00000639002 ADAM23O75077 832 aa8.86□□□□□ -0.99
CD44-239ENST00000639002 DHX32Q7L7V1 743 aaKnown RBP8.86□□□□□ -0.99
CD44-239ENST00000639002 LILRB5O75023 590 aa8.85□□□□□ -0.99
CD44-239ENST00000639002 AFF1P51825 1210 aaKnown RBP8.85□□□□□ -0.99
CD44-239ENST00000639002 PLAURQ03405 335 aa8.85□□□□□ -0.99
CD44-239ENST00000639002 PSAPL1Q6NUJ1 521 aa8.85□□□□□ -0.99
CD44-239ENST00000639002 RGL4Q8IZJ4 473 aa8.85□□□□□ -0.99
CD44-239ENST00000639002 CMTR1Q8N1G2 835 aaKnown RBP8.85□□□□□ -0.99
CD44-239ENST00000639002 TRPM4Q8TD43 1214 aa8.85□□□□□ -0.99
CD44-239ENST00000639002 BRD2P25440 801 aaKnown RBP8.84□□□□□ -0.99
CD44-239ENST00000639002 GRIK5Q16478 980 aa8.84□□□□□ -0.99
CD44-239ENST00000639002 CCDC82Q8N4S0 544 aa8.84□□□□□ -0.99
CD44-239ENST00000639002 JPH1Q9HDC5 661 aaPredicted RBP8.84□□□□□ -0.99
CD44-239ENST00000639002 ZBTB39O15060 712 aa8.83□□□□□ -1
CD44-239ENST00000639002 XYLBO75191 536 aa8.83□□□□□ -1
CD44-239ENST00000639002 FURINP09958 794 aa8.83□□□□□ -1
CD44-239ENST00000639002 RARAP10276 462 aa8.83□□□□□ -1
CD44-239ENST00000639002 MLLT1Q03111 559 aaPredicted RBP8.83□□□□□ -1
CD44-239ENST00000639002 GRIK4Q16099 956 aa8.83□□□□□ -1
CD44-239ENST00000639002 PERM1Q5SV97 790 aa8.83□□□□□ -1
CD44-239ENST00000639002 LPIN3Q9BQK8 851 aa8.83□□□□□ -1
CD44-239ENST00000639002 SPDYE3A6NKU9 549 aa8.82□□□□□ -1
CD44-239ENST00000639002 CPB1P15086 417 aa8.82□□□□□ -1
CD44-239ENST00000639002 TRIM28Q13263 835 aaKnown RBP8.82□□□□□ -1
CD44-239ENST00000639002 TRIP4Q15650 581 aaPredicted RBP8.82□□□□□ -1
CD44-239ENST00000639002 PRRT3Q5FWE3 981 aa8.82□□□□□ -1
CD44-239ENST00000639002 FAM35AQ86V20 835 aa8.82□□□□□ -1
CD44-239ENST00000639002 SEPT3Q9UH03 358 aa8.82□□□□□ -1
CD44-239ENST00000639002 A0A0A0MRY4 1105 aa8.81□□□□□ -1
CD44-239ENST00000639002 PTCD1O75127 700 aaKnown RBP8.81□□□□□ -1
CD44-239ENST00000639002 RGS9O75916 674 aaPredicted RBP8.81□□□□□ -1
CD44-239ENST00000639002 SCNN1AP37088 669 aa8.81□□□□□ -1
CD44-239ENST00000639002 GPLD1P80108 840 aa8.81□□□□□ -1
CD44-239ENST00000639002 TRAPPC3LQ5T215 181 aa8.81□□□□□ -1
CD44-239ENST00000639002 TLR7Q9NYK1 1049 aaKnown RBP8.81□□□□□ -1
CD44-239ENST00000639002 TMEM88BA6NKF7 163 aa8.8□□□□□ -1
CD44-239ENST00000639002 MMP20O60882 483 aa8.8□□□□□ -1
CD44-239ENST00000639002 ATP2B4P23634 1241 aa8.8□□□□□ -1
CD44-239ENST00000639002 HFE2Q6ZVN8 426 aa8.8□□□□□ -1
CD44-239ENST00000639002 NRLP54845 237 aa8.79□□□□□ -1
CD44-239ENST00000639002 DOC2BQ14184 412 aa8.79□□□□□ -1
CD44-239ENST00000639002 PCSK7Q16549 785 aa8.79□□□□□ -1
CD44-239ENST00000639002 DMRTC2Q8IXT2 367 aaPredicted RBP8.79□□□□□ -1
CD44-239ENST00000639002 FRRS1LQ9P0K9 344 aa8.79□□□□□ -1
CD44-239ENST00000639002 SELPP16109 830 aa8.78□□□□□ -1
CD44-239ENST00000639002 GATA4P43694 442 aa8.78□□□□□ -1
CD44-239ENST00000639002 TTC9Q92623 222 aa8.78□□□□□ -1
CD44-239ENST00000639002 STIM2Q9P246 746 aa8.78□□□□□ -1
CD44-239ENST00000639002 J3QW42 95 aa8.77□□□□□ -1.01
CD44-239ENST00000639002 K7ELQ4 463 aaPredicted RBP8.77□□□□□ -1.01
CD44-239ENST00000639002 ITGB7P26010 798 aa8.77□□□□□ -1.01
CD44-239ENST00000639002 ZAP70P43403 619 aa8.77□□□□□ -1.01
CD44-239ENST00000639002 MSL1Q68DK7 614 aa8.77□□□□□ -1.01
CD44-239ENST00000639002 LOC102724428A0A0B4J2F2 783 aa8.76□□□□□ -1.01
CD44-239ENST00000639002 APBA3O96018 575 aa8.76□□□□□ -1.01
CD44-239ENST00000639002 HOXD8P13378 290 aaPredicted RBP8.76□□□□□ -1.01
CD44-239ENST00000639002 SIK1P57059 783 aa8.76□□□□□ -1.01
CD44-239ENST00000639002 ELMSAN1Q6PJG2 1045 aa8.76□□□□□ -1.01
CD44-239ENST00000639002 SHISA2Q6UWI4 295 aa8.76□□□□□ -1.01
CD44-239ENST00000639002 FMR1NBQ8N0W7 255 aaPredicted RBP8.76□□□□□ -1.01
CD44-239ENST00000639002 SMG9Q9H0W8 520 aaKnown RBP8.76□□□□□ -1.01
CD44-239ENST00000639002 NLRP13Q86W25 1043 aa8.75□□□□□ -1.01
CD44-239ENST00000639002 GPR152Q8TDT2 470 aa8.75□□□□□ -1.01
CD44-239ENST00000639002 CARNS1A5YM72 827 aa8.74□□□□□ -1.01
CD44-239ENST00000639002 UBAP1LF5GYI3 381 aa8.74□□□□□ -1.01
CD44-239ENST00000639002 PSAPP07602 524 aa8.74□□□□□ -1.01
CD44-239ENST00000639002 ELNP15502 786 aa8.74□□□□□ -1.01
CD44-239ENST00000639002 SOX18P35713 384 aa8.74□□□□□ -1.01
CD44-239ENST00000639002 COL13A1Q5TAT6 717 aaPredicted RBP8.74□□□□□ -1.01
CD44-239ENST00000639002 PIK3R5Q8WYR1 880 aa8.74□□□□□ -1.01
CD44-239ENST00000639002 PPP1R15AO75807 674 aaPredicted RBP8.73□□□□□ -1.01
CD44-239ENST00000639002 SSFA2P28290 1259 aa8.73□□□□□ -1.01
CD44-239ENST00000639002 ADGRE1Q14246 886 aa8.73□□□□□ -1.01
CD44-239ENST00000639002 C14orf37Q86TY3 774 aa8.73□□□□□ -1.01
CD44-239ENST00000639002 ATCAYQ86WG3 371 aa8.73□□□□□ -1.01
CD44-239ENST00000639002 NSUN5Q96P11 429 aaKnown RBP8.73□□□□□ -1.01
CD44-239ENST00000639002 TPSG1Q9NRR2 321 aa8.73□□□□□ -1.01
CD44-239ENST00000639002 EIF2AK2P19525 551 aaKnown RBP8.72□□□□□ -1.01
CD44-239ENST00000639002 RAC1P63000 192 aa8.72□□□□□ -1.01
CD44-239ENST00000639002 RSPO4Q2I0M5 234 aaPredicted RBP8.72□□□□□ -1.01
CD44-239ENST00000639002 NKAPLQ5M9Q1 402 aa8.72□□□□□ -1.01
CD44-239ENST00000639002 PHLDB3Q6NSJ2 640 aa8.72□□□□□ -1.01
CD44-239ENST00000639002 OR13H1Q8NG92 308 aa8.72□□□□□ -1.01
CD44-239ENST00000639002 PLD4Q96BZ4 506 aa8.72□□□□□ -1.01
CD44-239ENST00000639002 LENG1Q96BZ8 264 aaPredicted RBP8.72□□□□□ -1.01
CD44-239ENST00000639002 NACC1Q96RE7 527 aa8.72□□□□□ -1.01
CD44-239ENST00000639002 C9orf172C9J069 976 aa8.71□□□□□ -1.02
CD44-239ENST00000639002 DEAF1O75398 565 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms