RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 RFX7Q2KHR2 1363 aa23.85■■□□□ 1.41
SYNGAP1-227ENST00000638142 GOLGA6L4A6NEF3 574 aa23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 SMAP1Q8IYB5 467 aaPredicted RBP23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 SPATA32Q96LK8 384 aa23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 MRVI1Q9Y6F6 885 aa23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 TAF6LQ9Y6J9 622 aa23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 ATP5JP18859 108 aa23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 FAM173BQ6P4H8 233 aa23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 ZNF790Q6PG37 636 aa23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 C17orf53Q8N3J3 647 aaPredicted RBP23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 COPRSQ9NQ92 184 aa23.84■■□□□ 1.41
SYNGAP1-227ENST00000638142 KLHDC4Q8TBB5 520 aa23.83■■□□□ 1.41
SYNGAP1-227ENST00000638142 METTL22Q9BUU2 404 aaPredicted RBP23.83■■□□□ 1.41
SYNGAP1-227ENST00000638142 TNMDQ9H2S6 317 aa23.83■■□□□ 1.41
SYNGAP1-227ENST00000638142 KCNF1Q9H3M0 494 aa23.83■■□□□ 1.41
SYNGAP1-227ENST00000638142 CCDC94Q9BW85 323 aaPredicted RBP23.83■■□□□ 1.4
SYNGAP1-227ENST00000638142 RBM43Q6ZSC3 357 aaKnown RBP23.82■■□□□ 1.4
SYNGAP1-227ENST00000638142 LEO1Q8WVC0 666 aaPredicted RBP23.82■■□□□ 1.4
SYNGAP1-227ENST00000638142 DACT1Q9NYF0 836 aa23.82■■□□□ 1.4
SYNGAP1-227ENST00000638142 GTF3C6Q969F1 213 aa23.81■■□□□ 1.4
SYNGAP1-227ENST00000638142 CHMP3Q9Y3E7 222 aa23.81■■□□□ 1.4
SYNGAP1-227ENST00000638142 C5P01031 1676 aa23.81■■□□□ 1.4
SYNGAP1-227ENST00000638142 CAMK4Q16566 473 aa23.81■■□□□ 1.4
SYNGAP1-227ENST00000638142 EPHA10Q5JZY3 1008 aa23.81■■□□□ 1.4
SYNGAP1-227ENST00000638142 XAGE3Q8WTP9 111 aa23.81■■□□□ 1.4
SYNGAP1-227ENST00000638142 PRDM4Q9UKN5 801 aa23.81■■□□□ 1.4
SYNGAP1-227ENST00000638142 AXIN2Q9Y2T1 843 aa23.81■■□□□ 1.4
SYNGAP1-227ENST00000638142 MYD88Q99836 296 aa23.8■■□□□ 1.4
SYNGAP1-227ENST00000638142 CLSTN2Q9H4D0 955 aa23.8■■□□□ 1.4
SYNGAP1-227ENST00000638142 STK3Q13188 491 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 NEK1Q96PY6 1258 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 SLC52A2Q9HAB3 445 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 DBNLQ9UJU6 430 aaKnown RBP23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 MYL6BP14649 208 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 TNNI3KQ59H18 835 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 COPS6Q7L5N1 327 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 SPC24Q8NBT2 197 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 TFIP11Q9UBB9 837 aaKnown RBP23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 PYCARDQ9ULZ3 195 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 U3KPZ7 1027 aaPredicted RBP23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 FPGT-TNNI3KV9GXZ4 949 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 COL15A1P39059 1388 aa23.79■■□□□ 1.4
SYNGAP1-227ENST00000638142 ORAI2Q96SN7 254 aa23.78■■□□□ 1.4
SYNGAP1-227ENST00000638142 RFX5P48382 616 aaPredicted RBP23.78■■□□□ 1.4
SYNGAP1-227ENST00000638142 SLC39A6Q13433 755 aa23.78■■□□□ 1.4
SYNGAP1-227ENST00000638142 EDC3Q96F86 508 aaKnown RBP23.78■■□□□ 1.4
SYNGAP1-227ENST00000638142 KIF3AQ9Y496 699 aa23.78■■□□□ 1.4
SYNGAP1-227ENST00000638142 SCN11AQ9UI33 1791 aa23.78■■□□□ 1.4
SYNGAP1-227ENST00000638142 ERBB3P21860 1342 aa23.77■■□□□ 1.4
SYNGAP1-227ENST00000638142 LUZP1Q86V48 1076 aa23.77■■□□□ 1.4
SYNGAP1-227ENST00000638142 CBX8Q9HC52 389 aa23.77■■□□□ 1.4
SYNGAP1-227ENST00000638142 PTPN12Q05209 780 aaKnown RBP23.77■■□□□ 1.4
SYNGAP1-227ENST00000638142 ANO6Q4KMQ2 910 aa23.77■■□□□ 1.4
SYNGAP1-227ENST00000638142 LMOD2Q6P5Q4 547 aa23.77■■□□□ 1.4
SYNGAP1-227ENST00000638142 CKAP2LQ8IYA6 745 aa23.77■■□□□ 1.4
SYNGAP1-227ENST00000638142 KDM6AO15550 1401 aaPredicted RBP23.77■■□□□ 1.39
SYNGAP1-227ENST00000638142 CHAF1AQ13111 956 aaPredicted RBP23.76■■□□□ 1.39
SYNGAP1-227ENST00000638142 RESTQ13127 1097 aa23.76■■□□□ 1.39
SYNGAP1-227ENST00000638142 RABL6Q3YEC7 729 aaPredicted RBP23.76■■□□□ 1.39
SYNGAP1-227ENST00000638142 ANKRD13DQ6ZTN6 518 aa23.76■■□□□ 1.39
SYNGAP1-227ENST00000638142 ZNF710Q8N1W2 664 aa23.76■■□□□ 1.39
SYNGAP1-227ENST00000638142 ZSCAN16Q9H4T2 348 aaPredicted RBP23.76■■□□□ 1.39
SYNGAP1-227ENST00000638142 TRPM3Q9HCF6 1732 aaPredicted RBP23.76■■□□□ 1.39
SYNGAP1-227ENST00000638142 RAPGEF4Q8WZA2 1011 aa23.76■■□□□ 1.39
SYNGAP1-227ENST00000638142 TFCP2Q12800 502 aa23.75■■□□□ 1.39
SYNGAP1-227ENST00000638142 ZNF609O15014 1411 aa23.75■■□□□ 1.39
SYNGAP1-227ENST00000638142 JAK2O60674 1132 aa23.75■■□□□ 1.39
SYNGAP1-227ENST00000638142 TDRD7Q8NHU6 1098 aaKnown RBP23.75■■□□□ 1.39
SYNGAP1-227ENST00000638142 BRF1Q92994 677 aa23.75■■□□□ 1.39
SYNGAP1-227ENST00000638142 CAVIN2O95810 425 aa23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 MCMDC2Q4G0Z9 681 aa23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 Q6ZUG5 572 aa23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 BICD2Q8TD16 824 aa23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 PGBD1Q96JS3 809 aa23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 ZNF142P52746 1687 aaPredicted RBP23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 LRP10Q7Z4F1 713 aa23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 HAUS7Q99871 368 aa23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 CFAP45Q9UL16 551 aa23.74■■□□□ 1.39
SYNGAP1-227ENST00000638142 NR1I2O75469 434 aa23.73■■□□□ 1.39
SYNGAP1-227ENST00000638142 LLPHQ9BRT6 129 aaKnown RBP23.73■■□□□ 1.39
SYNGAP1-227ENST00000638142 H3BQV1 296 aa23.73■■□□□ 1.39
SYNGAP1-227ENST00000638142 PTGS1P23219 599 aa23.73■■□□□ 1.39
SYNGAP1-227ENST00000638142 IFFO2Q5TF58 517 aa23.73■■□□□ 1.39
SYNGAP1-227ENST00000638142 RGPD5Q99666 1765 aa23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 CYP21A2P08686 494 aa23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 HSP90B1P14625 803 aaKnown RBP23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 PHKG2P15735 406 aa23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 PLA2G4DQ86XP0 818 aa23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 NFATC2IPQ8NCF5 419 aa23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 ZNF496Q96IT1 587 aaPredicted RBP23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 HMGB1P09429 215 aaKnown RBP23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 SNRPA1P09661 255 aaKnown RBP23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 SMARCC2Q8TAQ2 1214 aa23.72■■□□□ 1.39
SYNGAP1-227ENST00000638142 MST1RQ04912 1400 aa23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 DNAJC2Q99543 621 aaKnown RBP23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 SH3TC1Q8TE82 1336 aa23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 ZNF75DP51815 510 aa23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 UBE3BQ7Z3V4 1068 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 395.8 ms