RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 IFFO1Q0D2I5 559 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 SLMAPQ14BN4 828 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 E2F5Q15329 346 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 CAMK4Q16566 473 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 MSL1Q68DK7 614 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 BCAS4Q8TDM0 211 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 MCM8Q9UJA3 840 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 VPS37CA5D8V6 355 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 PREPLQ4J6C6 727 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 ARL10Q8N8L6 244 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 ZNF483Q8TF39 744 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 CACTINQ8WUQ7 758 aaKnown RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 GADD45BO75293 160 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 CD2BP2O95400 341 aaKnown RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 SLC8A3P57103 927 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 GNG11P61952 73 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 KRT85P78386 507 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 PARD3BQ8TEW8 1205 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 RABGGTAQ92696 567 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 FAXDC2Q96IV6 333 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 RGL1Q9NZL6 768 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 FRMD4BQ9Y2L6 1034 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 LRRC9Q6ZRR7 1453 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 LUC7L3O95232 432 aaKnown RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 OATP04181 439 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 ACTN3Q08043 901 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 SFSWAPQ12872 951 aaKnown RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC57Q2TAC2 916 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 RCSD1Q6JBY9 416 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 GBP7Q8N8V2 638 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC47Q96A33 483 aaKnown RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 FMNL2Q96PY5 1086 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 KLC4Q9NSK0 619 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 DDX19AQ9NUU7 478 aaKnown RBP6.57□□□□□ -1.36
SCN1A-216ENST00000637968 IMPDH2P12268 514 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 CUL3Q13618 768 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 NUTM2GQ5VZR2 741 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 CKAP2LQ8IYA6 745 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 DRAXINQ8NBI3 349 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-216ENST00000637968 TRIM58Q8NG06 486 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 HFM1A2PYH4 1435 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 BRD1O95696 1058 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 ETF1P62495 437 aaKnown RBP6.56□□□□□ -1.36
SCN1A-216ENST00000637968 KIF4BQ2VIQ3 1234 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 AMOTQ4VCS5 1084 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 ARHGAP22Q7Z5H3 698 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 KIAA0825Q8IV33 1275 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 C3orf20Q8ND61 904 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 CD248Q9HCU0 757 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 NRBP1Q9UHY1 535 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 CNPY2Q9Y2B0 182 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 RIPOR2Q9Y4F9 1068 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.56□□□□□ -1.36
SCN1A-216ENST00000637968 TBC1D8BQ0IIM8 1120 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 DYNC1I2Q13409 638 aaKnown RBP6.56□□□□□ -1.36
SCN1A-216ENST00000637968 RBM26Q5T8P6 1007 aaKnown RBP6.56□□□□□ -1.36
SCN1A-216ENST00000637968 SPATA21Q7Z572 469 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 CEP57L1Q8IYX8 460 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 TMX3Q96JJ7 454 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 ZSWIM4Q9H7M6 989 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 NUB1Q9Y5A7 615 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 TTC41PQ6P2S7 1318 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 LRRD1A4D1F6 860 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 MXRA7P84157 204 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 ARMC3Q5W041 872 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 LRRC31Q6UY01 552 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC80Q76M96 950 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 MFN1Q8IWA4 741 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 SPAG5Q96R06 1193 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 MPHOSPH8Q99549 860 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 TMEM165Q9HC07 324 aa6.56□□□□□ -1.36
SCN1A-216ENST00000637968 IL16Q14005 1332 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 RPGRIP1LQ68CZ1 1315 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 KIF5CO60282 957 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 ZRANB2O95218 330 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 CYP2E1P05181 493 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC40Q4G0X9 1142 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 SPTY2D1Q68D10 685 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 ZMAT2Q96NC0 199 aaKnown RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 NUP155O75694 1391 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 PSDA5PKW4 1024 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 SKAP2O75563 359 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 CDC25BP30305 580 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 PDE6BP35913 854 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 MRPL12P52815 198 aaKnown RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 SH2D4BQ5SQS7 431 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 ZKSCAN4Q969J2 545 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 UBA5Q9GZZ9 404 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 UNC45AQ9H3U1 944 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 CBX8Q9HC52 389 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 BLMP54132 1417 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 PFDN1O60925 122 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 TBC1D8O95759 1140 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 CA8P35219 290 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 TXLNAP40222 546 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 RARSP54136 660 aaKnown RBP6.55□□□□□ -1.36
SCN1A-216ENST00000637968 DDR1Q08345 913 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 LMNTD2Q8IXW0 634 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 FAM81AQ8TBF8 368 aa6.55□□□□□ -1.36
SCN1A-216ENST00000637968 EZH1Q92800 747 aaPredicted RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms