RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 CTSWP56202 376 aa18.03■□□□□ 0.48
LINC00339-208ENST00000634934 LMBR1LQ6UX01 489 aa18.03■□□□□ 0.48
LINC00339-208ENST00000634934 ANKRD44Q8N8A2 993 aa18.03■□□□□ 0.48
LINC00339-208ENST00000634934 NLRP3Q96P20 1036 aa18.03■□□□□ 0.48
LINC00339-208ENST00000634934 WWC3Q9ULE0 1092 aa18.03■□□□□ 0.48
LINC00339-208ENST00000634934 PCDHB15Q9Y5E8 787 aa18.03■□□□□ 0.48
LINC00339-208ENST00000634934 ANKRD31Q8N7Z5 1873 aa18.02■□□□□ 0.48
LINC00339-208ENST00000634934 C3orf67Q6ZVT6 689 aa18.02■□□□□ 0.47
LINC00339-208ENST00000634934 CEP85Q6P2H3 762 aa18.01■□□□□ 0.47
LINC00339-208ENST00000634934 BRIP1Q9BX63 1249 aa18.01■□□□□ 0.47
LINC00339-208ENST00000634934 ATP8B2P98198 1209 aa18■□□□□ 0.47
LINC00339-208ENST00000634934 RABL6Q3YEC7 729 aaPredicted RBP18■□□□□ 0.47
LINC00339-208ENST00000634934 RPAP2Q8IXW5 612 aaPredicted RBP18■□□□□ 0.47
LINC00339-208ENST00000634934 TTLL11Q8NHH1 800 aa18■□□□□ 0.47
LINC00339-208ENST00000634934 SRGAP3O43295 1099 aa17.99■□□□□ 0.47
LINC00339-208ENST00000634934 CSF1RP07333 972 aa17.99■□□□□ 0.47
LINC00339-208ENST00000634934 CCDC152Q4G0S7 254 aa17.99■□□□□ 0.47
LINC00339-208ENST00000634934 A0A0G2JLW4 131 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 PNMA6EA0A0J9YXQ4 647 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 PDE6BP35913 854 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 FAM161AQ3B820 660 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 GREM2Q9H772 168 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 COL11A2P13942 1736 aaPredicted RBP17.98■□□□□ 0.47
LINC00339-208ENST00000634934 RIC1Q4ADV7 1423 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 CHRNA5P30532 468 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 MTX1Q13505 466 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 SF3B3Q15393 1217 aaKnown RBP17.98■□□□□ 0.47
LINC00339-208ENST00000634934 SIRT2Q8IXJ6 389 aa17.98■□□□□ 0.47
LINC00339-208ENST00000634934 TNRC6CQ9HCJ0 1690 aaKnown RBP17.97■□□□□ 0.47
LINC00339-208ENST00000634934 BRCA1P38398 1863 aaKnown RBP17.97■□□□□ 0.47
LINC00339-208ENST00000634934 DDX60Q8IY21 1712 aaKnown RBP17.97■□□□□ 0.47
LINC00339-208ENST00000634934 DPEP1P16444 411 aa17.97■□□□□ 0.47
LINC00339-208ENST00000634934 IFIT5Q13325 482 aaKnown RBP17.97■□□□□ 0.47
LINC00339-208ENST00000634934 CCDC57Q2TAC2 916 aa17.97■□□□□ 0.47
LINC00339-208ENST00000634934 RPGRQ92834 1020 aaKnown RBP17.97■□□□□ 0.47
LINC00339-208ENST00000634934 HMMRO75330 724 aa17.96■□□□□ 0.47
LINC00339-208ENST00000634934 ITGA6P23229 1130 aa17.96■□□□□ 0.47
LINC00339-208ENST00000634934 B4GALNT3Q6L9W6 998 aa17.96■□□□□ 0.47
LINC00339-208ENST00000634934 LAMB2P55268 1798 aa17.95■□□□□ 0.46
LINC00339-208ENST00000634934 DLEC1Q9Y238 1755 aa17.95■□□□□ 0.46
LINC00339-208ENST00000634934 ANKRD18BA2A2Z9 1011 aa17.95■□□□□ 0.46
LINC00339-208ENST00000634934 KLRG2A4D1S0 409 aaPredicted RBP17.95■□□□□ 0.46
LINC00339-208ENST00000634934 TGFB2P61812 414 aa17.95■□□□□ 0.46
LINC00339-208ENST00000634934 TAF7LQ5H9L4 462 aa17.95■□□□□ 0.46
LINC00339-208ENST00000634934 DDX46Q7L014 1031 aaKnown RBP17.95■□□□□ 0.46
LINC00339-208ENST00000634934 C2CD5Q86YS7 1000 aa17.95■□□□□ 0.46
LINC00339-208ENST00000634934 SEC31BQ9NQW1 1179 aa17.95■□□□□ 0.46
LINC00339-208ENST00000634934 KCNA3P22001 575 aa17.94■□□□□ 0.46
LINC00339-208ENST00000634934 POLA2Q14181 598 aa17.94■□□□□ 0.46
LINC00339-208ENST00000634934 CRY2Q49AN0 593 aa17.94■□□□□ 0.46
LINC00339-208ENST00000634934 KLHDC4Q8TBB5 520 aa17.94■□□□□ 0.46
LINC00339-208ENST00000634934 SSH3Q8TE77 659 aa17.94■□□□□ 0.46
LINC00339-208ENST00000634934 RBM17Q96I25 401 aaKnown RBP17.94■□□□□ 0.46
LINC00339-208ENST00000634934 RWDD1Q9H446 243 aaPredicted RBP17.94■□□□□ 0.46
LINC00339-208ENST00000634934 H0YIN7 160 aa17.93■□□□□ 0.46
LINC00339-208ENST00000634934 YBX3P16989 372 aaKnown RBP eCLIP17.93■□□□□ 0.461e-7■■■■□ 23.4
LINC00339-208ENST00000634934 ZNF594Q96JF6 807 aaPredicted RBP17.93■□□□□ 0.46
LINC00339-208ENST00000634934 CCDC136Q96JN2 1154 aa17.93■□□□□ 0.46
LINC00339-208ENST00000634934 SRGNP10124 158 aa17.93■□□□□ 0.46
LINC00339-208ENST00000634934 RFX5P48382 616 aaPredicted RBP17.93■□□□□ 0.46
LINC00339-208ENST00000634934 HDAC1Q13547 482 aaPredicted RBP17.93■□□□□ 0.46
LINC00339-208ENST00000634934 PA2G4Q9UQ80 394 aaKnown RBP17.93■□□□□ 0.46
LINC00339-208ENST00000634934 MYH3P11055 1940 aa17.93■□□□□ 0.46
LINC00339-208ENST00000634934 RTL9Q8NET4 1388 aa17.92■□□□□ 0.46
LINC00339-208ENST00000634934 CACNA1SQ13698 1873 aa17.92■□□□□ 0.46
LINC00339-208ENST00000634934 IGHDP01880 384 aa17.92■□□□□ 0.46
LINC00339-208ENST00000634934 NPR1P16066 1061 aa17.92■□□□□ 0.46
LINC00339-208ENST00000634934 GPR162Q16538 588 aa17.92■□□□□ 0.46
LINC00339-208ENST00000634934 ZNF622Q969S3 477 aaKnown RBP eCLIP17.92■□□□□ 0.46
LINC00339-208ENST00000634934 MASTLQ96GX5 879 aa17.92■□□□□ 0.46
LINC00339-208ENST00000634934 CDC5LQ99459 802 aaKnown RBP17.92■□□□□ 0.46
LINC00339-208ENST00000634934 SIL1Q9H173 461 aa17.92■□□□□ 0.46
LINC00339-208ENST00000634934 PDZRN3Q9UPQ7 1066 aa17.92■□□□□ 0.46
LINC00339-208ENST00000634934 SURF6O75683 361 aaKnown RBP17.91■□□□□ 0.46
LINC00339-208ENST00000634934 PTPN12Q05209 780 aaKnown RBP17.91■□□□□ 0.46
LINC00339-208ENST00000634934 ANKRD18AQ8IVF6 992 aa17.91■□□□□ 0.46
LINC00339-208ENST00000634934 HOXA10P31260 410 aaPredicted RBP17.9■□□□□ 0.46
LINC00339-208ENST00000634934 IGHMBP2P38935 993 aaKnown RBP17.9■□□□□ 0.46
LINC00339-208ENST00000634934 CELF1Q92879 486 aaKnown RBP17.9■□□□□ 0.46
LINC00339-208ENST00000634934 MPHOSPH8Q99549 860 aa17.9■□□□□ 0.46
LINC00339-208ENST00000634934 COPRSQ9NQ92 184 aa17.9■□□□□ 0.46
LINC00339-208ENST00000634934 RPS8P62241 208 aaKnown RBP17.89■□□□□ 0.45
LINC00339-208ENST00000634934 OS9Q13438 667 aaPredicted RBP17.89■□□□□ 0.45
LINC00339-208ENST00000634934 GRAPQ13588 217 aa17.89■□□□□ 0.45
LINC00339-208ENST00000634934 GRAPLQ8TC17 118 aaPredicted RBP17.89■□□□□ 0.45
LINC00339-208ENST00000634934 CRAMP1Q96RY5 1269 aa17.89■□□□□ 0.45
LINC00339-208ENST00000634934 EXOC6BQ9Y2D4 811 aa17.89■□□□□ 0.45
LINC00339-208ENST00000634934 APBB1O00213 710 aa17.88■□□□□ 0.45
LINC00339-208ENST00000634934 G3BP1Q13283 466 aaKnown RBP eCLIP17.88■□□□□ 0.45
LINC00339-208ENST00000634934 STYK1Q6J9G0 422 aa17.88■□□□□ 0.45
LINC00339-208ENST00000634934 LDHAL6AQ6ZMR3 332 aa17.88■□□□□ 0.45
LINC00339-208ENST00000634934 CNNM1Q9NRU3 951 aa17.88■□□□□ 0.45
LINC00339-208ENST00000634934 BCS1LQ9Y276 419 aa17.88■□□□□ 0.45
LINC00339-208ENST00000634934 ALDH1B1P30837 517 aa17.88■□□□□ 0.45
LINC00339-208ENST00000634934 PUS3Q9BZE2 481 aaKnown RBP17.88■□□□□ 0.45
LINC00339-208ENST00000634934 DCTPP1Q9H773 170 aa17.88■□□□□ 0.45
LINC00339-208ENST00000634934 PIM2Q9P1W9 311 aa17.88■□□□□ 0.45
LINC00339-208ENST00000634934 EYA2O00167 538 aa17.87■□□□□ 0.45
LINC00339-208ENST00000634934 LRRC24Q50LG9 513 aa17.87■□□□□ 0.45
LINC00339-208ENST00000634934 CNKSR1Q969H4 720 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms