RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 ZNF296Q8WUU4 475 aaPredicted RBP18.7■□□□□ 0.58
SNX1-214ENST00000625244 HDAC9Q9UKV0 1011 aa18.7■□□□□ 0.58
SNX1-214ENST00000625244 ERVV-1B6SEH8 477 aa18.69■□□□□ 0.58
SNX1-214ENST00000625244 DPP8Q6V1X1 898 aaPredicted RBP18.69■□□□□ 0.58
SNX1-214ENST00000625244 U2SURPO15042 1029 aaKnown RBP18.68■□□□□ 0.58
SNX1-214ENST00000625244 PHACTR3Q96KR7 559 aa18.68■□□□□ 0.58
SNX1-214ENST00000625244 IBTKQ9P2D0 1353 aaPredicted RBP18.68■□□□□ 0.58
SNX1-214ENST00000625244 NTSR2O95665 410 aa18.67■□□□□ 0.58
SNX1-214ENST00000625244 TBC1D8O95759 1140 aa18.67■□□□□ 0.58
SNX1-214ENST00000625244 TTLL7Q6ZT98 887 aa18.67■□□□□ 0.58
SNX1-214ENST00000625244 RASAL3Q86YV0 1011 aa18.67■□□□□ 0.58
SNX1-214ENST00000625244 REM2Q8IYK8 340 aaPredicted RBP18.67■□□□□ 0.58
SNX1-214ENST00000625244 ABCC4O15439 1325 aa18.67■□□□□ 0.58
SNX1-214ENST00000625244 MAP3K15Q6ZN16 1313 aa18.67■□□□□ 0.58
SNX1-214ENST00000625244 POLR2AP24928 1970 aaKnown RBP18.66■□□□□ 0.58
SNX1-214ENST00000625244 MPNDQ8N594 471 aa18.66■□□□□ 0.58
SNX1-214ENST00000625244 DPF2Q92785 391 aa18.66■□□□□ 0.58
SNX1-214ENST00000625244 DCPSQ96C86 337 aaKnown RBP18.66■□□□□ 0.58
SNX1-214ENST00000625244 RBM26Q5T8P6 1007 aaKnown RBP18.65■□□□□ 0.58
SNX1-214ENST00000625244 FBXO46Q6PJ61 603 aaPredicted RBP18.65■□□□□ 0.58
SNX1-214ENST00000625244 MCM10Q7L590 875 aa18.65■□□□□ 0.58
SNX1-214ENST00000625244 SP8Q8IXZ3 490 aa18.65■□□□□ 0.58
SNX1-214ENST00000625244 NLRP3Q96P20 1036 aa18.65■□□□□ 0.58
SNX1-214ENST00000625244 PSMD14O00487 310 aa18.64■□□□□ 0.57
SNX1-214ENST00000625244 ZNF34Q8IZ26 560 aa18.64■□□□□ 0.57
SNX1-214ENST00000625244 ZBTB3Q9H5J0 574 aa18.64■□□□□ 0.57
SNX1-214ENST00000625244 NUP98P52948 1817 aa18.64■□□□□ 0.57
SNX1-214ENST00000625244 COL3A1P02461 1466 aaPredicted RBP18.64■□□□□ 0.57
SNX1-214ENST00000625244 HSPA5P11021 654 aaKnown RBP18.63■□□□□ 0.57
SNX1-214ENST00000625244 RANBP2P49792 3224 aaKnown RBP18.62■□□□□ 0.57
SNX1-214ENST00000625244 BBOX1O75936 387 aa18.62■□□□□ 0.57
SNX1-214ENST00000625244 KIF6Q6ZMV9 814 aa18.62■□□□□ 0.57
SNX1-214ENST00000625244 CDCA5Q96FF9 252 aa18.62■□□□□ 0.57
SNX1-214ENST00000625244 ASTN2O75129 1339 aaPredicted RBP18.62■□□□□ 0.57
SNX1-214ENST00000625244 GPR25O00155 361 aa18.61■□□□□ 0.57
SNX1-214ENST00000625244 RRP7AQ9Y3A4 280 aaKnown RBP18.61■□□□□ 0.57
SNX1-214ENST00000625244 POTEFA5A3E0 1075 aa18.6■□□□□ 0.57
SNX1-214ENST00000625244 PRKAR2BP31323 418 aa18.6■□□□□ 0.57
SNX1-214ENST00000625244 DCTN1Q14203 1278 aa18.6■□□□□ 0.57
SNX1-214ENST00000625244 SLC10A5Q5PT55 438 aa18.6■□□□□ 0.57
SNX1-214ENST00000625244 PPP1R42Q7Z4L9 355 aa18.6■□□□□ 0.57
SNX1-214ENST00000625244 SULF1Q8IWU6 871 aa18.6■□□□□ 0.57
SNX1-214ENST00000625244 MIS18AQ9NYP9 233 aa18.6■□□□□ 0.57
SNX1-214ENST00000625244 GGA3Q9NZ52 723 aa18.6■□□□□ 0.57
SNX1-214ENST00000625244 COL6A3P12111 3177 aa18.59■□□□□ 0.57
SNX1-214ENST00000625244 EIF4G2P78344 907 aaKnown RBP eCLIP18.59■□□□□ 0.57
SNX1-214ENST00000625244 RTF1Q92541 710 aaKnown RBP18.59■□□□□ 0.57
SNX1-214ENST00000625244 DBNDD1Q9H9R9 158 aa18.59■□□□□ 0.57
SNX1-214ENST00000625244 KCNQ5Q9NR82 932 aa18.59■□□□□ 0.57
SNX1-214ENST00000625244 DUOX1Q9NRD9 1551 aa18.59■□□□□ 0.57
SNX1-214ENST00000625244 TRIOBPQ9H2D6 2365 aa18.58■□□□□ 0.56
SNX1-214ENST00000625244 MYL6BP14649 208 aa18.58■□□□□ 0.56
SNX1-214ENST00000625244 KIF4BQ2VIQ3 1234 aa18.58■□□□□ 0.56
SNX1-214ENST00000625244 CC2D1BQ5T0F9 858 aaKnown RBP18.58■□□□□ 0.56
SNX1-214ENST00000625244 RSPH6AQ9H0K4 717 aa18.58■□□□□ 0.56
SNX1-214ENST00000625244 CEP290O15078 2479 aa18.58■□□□□ 0.56
SNX1-214ENST00000625244 RPS12P25398 132 aaKnown RBP18.57■□□□□ 0.56
SNX1-214ENST00000625244 TRIM26Q12899 539 aaPredicted RBP18.57■□□□□ 0.56
SNX1-214ENST00000625244 NOM1Q5C9Z4 860 aaKnown RBP18.57■□□□□ 0.56
SNX1-214ENST00000625244 GIGYF2Q6Y7W6 1299 aaKnown RBP18.57■□□□□ 0.56
SNX1-214ENST00000625244 MOB2Q70IA6 237 aa18.57■□□□□ 0.56
SNX1-214ENST00000625244 UTP14AQ9BVJ6 771 aaKnown RBP18.57■□□□□ 0.56
SNX1-214ENST00000625244 R3HDMLQ9H3Y0 253 aa18.57■□□□□ 0.56
SNX1-214ENST00000625244 RTL9Q8NET4 1388 aa18.56■□□□□ 0.56
SNX1-214ENST00000625244 WASHC4Q2M389 1173 aa18.56■□□□□ 0.56
SNX1-214ENST00000625244 PARP10Q53GL7 1025 aa18.56■□□□□ 0.56
SNX1-214ENST00000625244 CUL9Q8IWT3 2517 aa18.56■□□□□ 0.56
SNX1-214ENST00000625244 KIAA0100Q14667 2235 aaKnown RBP18.55■□□□□ 0.56
SNX1-214ENST00000625244 RIMBP2O15034 1052 aa18.55■□□□□ 0.56
SNX1-214ENST00000625244 HCLS1P14317 486 aaPredicted RBP18.55■□□□□ 0.56
SNX1-214ENST00000625244 TM4SF4P48230 202 aa18.55■□□□□ 0.56
SNX1-214ENST00000625244 GRAPQ13588 217 aa18.55■□□□□ 0.56
SNX1-214ENST00000625244 TAF7Q15545 349 aaPredicted RBP18.55■□□□□ 0.56
SNX1-214ENST00000625244 GRAPLQ8TC17 118 aaPredicted RBP18.55■□□□□ 0.56
SNX1-214ENST00000625244 COLQQ9Y215 455 aaPredicted RBP18.55■□□□□ 0.56
SNX1-214ENST00000625244 UBE2Q2LH0YL09 131 aa18.54■□□□□ 0.56
SNX1-214ENST00000625244 FKTNO75072 461 aa18.54■□□□□ 0.56
SNX1-214ENST00000625244 FKBP1BP68106 108 aa18.54■□□□□ 0.56
SNX1-214ENST00000625244 DDX46Q7L014 1031 aaKnown RBP18.54■□□□□ 0.56
SNX1-214ENST00000625244 LAMB4A4D0S4 1761 aa18.54■□□□□ 0.56
SNX1-214ENST00000625244 DLL1O00548 723 aa18.53■□□□□ 0.56
SNX1-214ENST00000625244 PER1O15534 1290 aaPredicted RBP18.53■□□□□ 0.56
SNX1-214ENST00000625244 ANGEL2Q5VTE6 544 aaKnown RBP18.53■□□□□ 0.56
SNX1-214ENST00000625244 ECE2O60344 883 aa18.52■□□□□ 0.56
SNX1-214ENST00000625244 MKRN3Q13064 507 aaKnown RBP18.52■□□□□ 0.56
SNX1-214ENST00000625244 SCARF1Q14162 830 aa18.52■□□□□ 0.56
SNX1-214ENST00000625244 DOK7Q18PE1 504 aa18.52■□□□□ 0.56
SNX1-214ENST00000625244 TIMELESSQ9UNS1 1208 aa18.52■□□□□ 0.56
SNX1-214ENST00000625244 PAPPA2Q9BXP8 1791 aa18.51■□□□□ 0.55
SNX1-214ENST00000625244 INTS3Q68E01 1043 aaKnown RBP18.51■□□□□ 0.55
SNX1-214ENST00000625244 POLLQ9UGP5 575 aa18.51■□□□□ 0.55
SNX1-214ENST00000625244 SCAF8Q9UPN6 1271 aaKnown RBP18.51■□□□□ 0.55
SNX1-214ENST00000625244 VIL1P09327 827 aaKnown RBP18.5■□□□□ 0.55
SNX1-214ENST00000625244 EN2P19622 333 aaPredicted RBP18.5■□□□□ 0.55
SNX1-214ENST00000625244 CFHR5Q9BXR6 569 aa18.5■□□□□ 0.55
SNX1-214ENST00000625244 NSFL1CQ9UNZ2 370 aaKnown RBP18.5■□□□□ 0.55
SNX1-214ENST00000625244 LAMB2P55268 1798 aa18.5■□□□□ 0.55
SNX1-214ENST00000625244 TAF1P21675 1872 aa18.5■□□□□ 0.55
SNX1-214ENST00000625244 C6orf229H3BNL8 230 aa18.49■□□□□ 0.55
SNX1-214ENST00000625244 EIF4A1P60842 406 aaKnown RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms