RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 GPATCH3Q96I76 525 aa16.62■□□□□ 0.25
LDB3-209ENST00000623056 TOPAZ1Q8N9V7 1692 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 CCDC66A2RUB6 948 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 CCZ1BP86790 482 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 CCZ1P86791 482 aaPredicted RBP16.61■□□□□ 0.25
LDB3-209ENST00000623056 STK3Q13188 491 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 SLFNL1Q499Z3 407 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 BABAM1Q9NWV8 329 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 TRMT1Q9NXH9 659 aaKnown RBP16.61■□□□□ 0.25
LDB3-209ENST00000623056 TBX22Q9Y458 520 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 CCDC69A6NI79 296 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 GIGYF1O75420 1035 aaPredicted RBP16.61■□□□□ 0.25
LDB3-209ENST00000623056 IFIT2P09913 472 aaKnown RBP16.61■□□□□ 0.25
LDB3-209ENST00000623056 AMPHP49418 695 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 DNAAF4Q8WXU2 420 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 ALDH8A1Q9H2A2 487 aaPredicted RBP16.61■□□□□ 0.25
LDB3-209ENST00000623056 TAF6LQ9Y6J9 622 aa16.61■□□□□ 0.25
LDB3-209ENST00000623056 ZBTB22O15209 634 aa16.6■□□□□ 0.25
LDB3-209ENST00000623056 RESTQ13127 1097 aa16.6■□□□□ 0.25
LDB3-209ENST00000623056 CCAR2Q8N163 923 aaKnown RBP16.6■□□□□ 0.25
LDB3-209ENST00000623056 USP16Q9Y5T5 823 aa16.6■□□□□ 0.25
LDB3-209ENST00000623056 ADCY9O60503 1353 aa16.6■□□□□ 0.25
LDB3-209ENST00000623056 NPHP4O75161 1426 aaPredicted RBP16.59■□□□□ 0.25
LDB3-209ENST00000623056 EIF2S2P20042 333 aaKnown RBP16.59■□□□□ 0.25
LDB3-209ENST00000623056 STX1AQ16623 288 aa16.59■□□□□ 0.25
LDB3-209ENST00000623056 PI4KAP2A4QPH2 592 aa16.59■□□□□ 0.25
LDB3-209ENST00000623056 JAK2O60674 1132 aa16.59■□□□□ 0.25
LDB3-209ENST00000623056 SLU7O95391 586 aaKnown RBP16.59■□□□□ 0.25
LDB3-209ENST00000623056 RNF20Q5VTR2 975 aa16.59■□□□□ 0.25
LDB3-209ENST00000623056 FILIP1Q7Z7B0 1213 aa16.59■□□□□ 0.25
LDB3-209ENST00000623056 PI4KAP1Q8N8J0 262 aa16.59■□□□□ 0.25
LDB3-209ENST00000623056 ZNF446Q9NWS9 450 aa16.59■□□□□ 0.25
LDB3-209ENST00000623056 HIP1O00291 1037 aa16.58■□□□□ 0.25
LDB3-209ENST00000623056 MTX1Q13505 466 aa16.58■□□□□ 0.25
LDB3-209ENST00000623056 AACSQ86V21 672 aa16.58■□□□□ 0.25
LDB3-209ENST00000623056 ST7Q9NRC1 585 aa16.58■□□□□ 0.25
LDB3-209ENST00000623056 SNRKQ9NRH2 765 aa16.58■□□□□ 0.25
LDB3-209ENST00000623056 PA2G4Q9UQ80 394 aaKnown RBP16.58■□□□□ 0.25
LDB3-209ENST00000623056 A0A0D9SFI3 127 aa16.58■□□□□ 0.24
LDB3-209ENST00000623056 BRF1Q92994 677 aa16.58■□□□□ 0.24
LDB3-209ENST00000623056 KCND1Q9NSA2 647 aa16.58■□□□□ 0.24
LDB3-209ENST00000623056 DDX11Q96FC9 970 aa16.57■□□□□ 0.24
LDB3-209ENST00000623056 CHPF2Q9P2E5 772 aa16.57■□□□□ 0.24
LDB3-209ENST00000623056 BECN2A8MW95 431 aa16.57■□□□□ 0.24
LDB3-209ENST00000623056 ERC1Q8IUD2 1116 aa16.57■□□□□ 0.24
LDB3-209ENST00000623056 DHX40Q8IX18 779 aaKnown RBP16.57■□□□□ 0.24
LDB3-209ENST00000623056 ERICH4A6NGS2 130 aa16.56■□□□□ 0.24
LDB3-209ENST00000623056 KCNA6P17658 529 aa16.56■□□□□ 0.24
LDB3-209ENST00000623056 GTF3C6Q969F1 213 aa16.56■□□□□ 0.24
LDB3-209ENST00000623056 CFAP45Q9UL16 551 aa16.56■□□□□ 0.24
LDB3-209ENST00000623056 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.56■□□□□ 0.24
LDB3-209ENST00000623056 KIF2AO00139 706 aaPredicted RBP16.56■□□□□ 0.24
LDB3-209ENST00000623056 CTAGE5O15320 804 aa16.56■□□□□ 0.24
LDB3-209ENST00000623056 IRX5P78411 483 aaPredicted RBP16.56■□□□□ 0.24
LDB3-209ENST00000623056 TIGD1Q96MW7 591 aa16.56■□□□□ 0.24
LDB3-209ENST00000623056 H3BQV1 296 aa16.55■□□□□ 0.24
LDB3-209ENST00000623056 NPHP1O15259 732 aa16.55■□□□□ 0.24
LDB3-209ENST00000623056 CEBPZQ03701 1054 aaKnown RBP16.55■□□□□ 0.24
LDB3-209ENST00000623056 IFFO2Q5TF58 517 aa16.55■□□□□ 0.24
LDB3-209ENST00000623056 MED23Q9ULK4 1368 aa16.55■□□□□ 0.24
LDB3-209ENST00000623056 A0A087WWV3 80 aa16.54■□□□□ 0.24
LDB3-209ENST00000623056 H2AFXP16104 143 aaPredicted RBP16.54■□□□□ 0.24
LDB3-209ENST00000623056 FAM193AP78312 1265 aa16.54■□□□□ 0.24
LDB3-209ENST00000623056 CCAR1Q8IX12 1150 aaKnown RBP16.54■□□□□ 0.24
LDB3-209ENST00000623056 GOLPH3LQ9H4A5 285 aa16.54■□□□□ 0.24
LDB3-209ENST00000623056 ZSCAN16Q9H4T2 348 aaPredicted RBP16.54■□□□□ 0.24
LDB3-209ENST00000623056 HMG20BQ9P0W2 317 aa16.54■□□□□ 0.24
LDB3-209ENST00000623056 ANXA1P04083 346 aa16.54■□□□□ 0.24
LDB3-209ENST00000623056 FSD1Q9BTV5 496 aa16.54■□□□□ 0.24
LDB3-209ENST00000623056 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.54■□□□□ 0.24
LDB3-209ENST00000623056 DIP2AQ14689 1571 aa16.54■□□□□ 0.24
LDB3-209ENST00000623056 GSDMDP57764 484 aa16.53■□□□□ 0.24
LDB3-209ENST00000623056 EIF4A1P60842 406 aaKnown RBP16.53■□□□□ 0.24
LDB3-209ENST00000623056 TSGA10IPQ3SY00 556 aa16.53■□□□□ 0.24
LDB3-209ENST00000623056 ZNF589Q86UQ0 364 aaPredicted RBP16.53■□□□□ 0.24
LDB3-209ENST00000623056 RBM33Q96EV2 1170 aaKnown RBP16.53■□□□□ 0.24
LDB3-209ENST00000623056 L2HGDHQ9H9P8 463 aa16.53■□□□□ 0.24
LDB3-209ENST00000623056 ANO10Q9NW15 660 aa16.53■□□□□ 0.24
LDB3-209ENST00000623056 ADD1P35611 737 aaKnown RBP16.53■□□□□ 0.24
LDB3-209ENST00000623056 SNW1Q13573 536 aaKnown RBP16.53■□□□□ 0.24
LDB3-209ENST00000623056 BMS1Q14692 1282 aaKnown RBP16.53■□□□□ 0.24
LDB3-209ENST00000623056 ERCC6LQ2NKX8 1250 aa16.53■□□□□ 0.24
LDB3-209ENST00000623056 CREBRFQ8IUR6 639 aa16.53■□□□□ 0.24
LDB3-209ENST00000623056 EAF2Q96CJ1 260 aaPredicted RBP16.53■□□□□ 0.24
LDB3-209ENST00000623056 NOL10Q9BSC4 688 aaKnown RBP16.53■□□□□ 0.24
LDB3-209ENST00000623056 NWD1Q149M9 1564 aa16.53■□□□□ 0.24
LDB3-209ENST00000623056 JCADQ9P266 1359 aa16.53■□□□□ 0.24
LDB3-209ENST00000623056 AOPEPQ8N6M6 819 aa16.52■□□□□ 0.24
LDB3-209ENST00000623056 FTOQ9C0B1 505 aaKnown RBP eCLIP16.52■□□□□ 0.24
LDB3-209ENST00000623056 CCDC8Q9H0W5 538 aaPredicted RBP16.52■□□□□ 0.24
LDB3-209ENST00000623056 OSBPL5Q9H0X9 879 aaPredicted RBP16.52■□□□□ 0.24
LDB3-209ENST00000623056 TLR7Q9NYK1 1049 aaKnown RBP16.52■□□□□ 0.24
LDB3-209ENST00000623056 CALCOCO1Q9P1Z2 691 aa16.52■□□□□ 0.24
LDB3-209ENST00000623056 CCDC73Q6ZRK6 1079 aa16.52■□□□□ 0.23
LDB3-209ENST00000623056 NBPF11Q86T75 865 aa16.52■□□□□ 0.23
LDB3-209ENST00000623056 ANKLE2Q86XL3 938 aa16.52■□□□□ 0.23
LDB3-209ENST00000623056 LRRN4CLQ8ND94 238 aa16.52■□□□□ 0.23
LDB3-209ENST00000623056 C9orf78Q9NZ63 289 aaPredicted RBP16.52■□□□□ 0.23
LDB3-209ENST00000623056 RCOR1Q9UKL0 485 aa16.52■□□□□ 0.23
LDB3-209ENST00000623056 FHOD1Q9Y613 1164 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms