RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 RNF20Q5VTR2 975 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 SYAP1Q96A49 352 aaPredicted RBP11.3□□□□□ -0.6
PDPN-212ENST00000621990 TOGARAM1Q9Y4F4 1720 aa11.3□□□□□ -0.6
PDPN-212ENST00000621990 TAF5LO75529 589 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 ME3Q16798 604 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 HAUS7Q99871 368 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 ATP6V1DQ9Y5K8 247 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 SPEF2Q9C093 1822 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 ATP5J2-PTCD1G3V325 749 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 PTCD1O75127 700 aaKnown RBP11.29□□□□□ -0.6
PDPN-212ENST00000621990 ZNF589Q86UQ0 364 aaPredicted RBP11.29□□□□□ -0.6
PDPN-212ENST00000621990 GADD45BO75293 160 aaPredicted RBP11.29□□□□□ -0.6
PDPN-212ENST00000621990 GJB2P29033 226 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 ANKRD1Q15327 319 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 LARP6Q9BRS8 491 aaKnown RBP11.29□□□□□ -0.6
PDPN-212ENST00000621990 CARD10Q9BWT7 1032 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 GPR108Q9NPR9 543 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 TPCN1Q9ULQ1 816 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 MTMR6Q9Y217 621 aa11.29□□□□□ -0.6
PDPN-212ENST00000621990 PHF14O94880 888 aa11.28□□□□□ -0.6
PDPN-212ENST00000621990 RPS6KB1P23443 525 aa11.28□□□□□ -0.6
PDPN-212ENST00000621990 CCDC83Q8IWF9 413 aa11.28□□□□□ -0.6
PDPN-212ENST00000621990 PRDM11Q9NQV5 511 aa11.28□□□□□ -0.6
PDPN-212ENST00000621990 ZNF609O15014 1411 aa11.28□□□□□ -0.6
PDPN-212ENST00000621990 ATG9AQ7Z3C6 839 aa11.28□□□□□ -0.6
PDPN-212ENST00000621990 JARID2Q92833 1246 aaPredicted RBP11.28□□□□□ -0.6
PDPN-212ENST00000621990 CWC25Q9NXE8 425 aaPredicted RBP11.28□□□□□ -0.6
PDPN-212ENST00000621990 PALLDQ8WX93 1383 aa11.28□□□□□ -0.6
PDPN-212ENST00000621990 NHSL1Q5SYE7 1610 aa11.27□□□□□ -0.6
PDPN-212ENST00000621990 KCNJ4P48050 445 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 UBE2HP62256 183 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 LMBR1LQ6UX01 489 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 GDPD2Q9HCC8 539 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 ATG3Q9NT62 314 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 CNPY2Q9Y2B0 182 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 IL2RBP14784 551 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 COL9A3Q14050 684 aaPredicted RBP11.27□□□□□ -0.61
PDPN-212ENST00000621990 KRT32Q14532 448 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 BLOC1S2Q6QNY1 142 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 TOM1L2Q6ZVM7 507 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 CCDC191Q8NCU4 936 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 EDC3Q96F86 508 aaKnown RBP11.27□□□□□ -0.61
PDPN-212ENST00000621990 DBNDD2Q9BQY9 259 aa11.27□□□□□ -0.61
PDPN-212ENST00000621990 SH3TC1Q8TE82 1336 aa11.26□□□□□ -0.61
PDPN-212ENST00000621990 TOB2Q14106 344 aaPredicted RBP11.26□□□□□ -0.61
PDPN-212ENST00000621990 TTLL7Q6ZT98 887 aa11.26□□□□□ -0.61
PDPN-212ENST00000621990 ZSCAN30Q86W11 494 aa11.26□□□□□ -0.61
PDPN-212ENST00000621990 TAF6LQ9Y6J9 622 aa11.26□□□□□ -0.61
PDPN-212ENST00000621990 CIAO1O76071 339 aa11.26□□□□□ -0.61
PDPN-212ENST00000621990 TSPY26PQ9H489 355 aa11.26□□□□□ -0.61
PDPN-212ENST00000621990 CCDC183Q5T5S1 534 aa11.25□□□□□ -0.61
PDPN-212ENST00000621990 KBTBD3Q8NAB2 608 aa11.25□□□□□ -0.61
PDPN-212ENST00000621990 SLAIN2Q9P270 581 aa11.25□□□□□ -0.61
PDPN-212ENST00000621990 U3KPZ7 1027 aaPredicted RBP11.25□□□□□ -0.61
PDPN-212ENST00000621990 IL15P40933 162 aaPredicted RBP11.25□□□□□ -0.61
PDPN-212ENST00000621990 HSPA2P54652 639 aa11.25□□□□□ -0.61
PDPN-212ENST00000621990 CSPP1Q1MSJ5 1256 aa11.25□□□□□ -0.61
PDPN-212ENST00000621990 MCMDC2Q4G0Z9 681 aa11.25□□□□□ -0.61
PDPN-212ENST00000621990 LAMA4Q16363 1823 aa11.24□□□□□ -0.61
PDPN-212ENST00000621990 LETM1O95202 739 aaPredicted RBP11.24□□□□□ -0.61
PDPN-212ENST00000621990 A1BGP04217 495 aa11.24□□□□□ -0.61
PDPN-212ENST00000621990 FOXD4L6Q3SYB3 417 aaPredicted RBP11.24□□□□□ -0.61
PDPN-212ENST00000621990 FOXD4L3Q6VB84 417 aaPredicted RBP11.24□□□□□ -0.61
PDPN-212ENST00000621990 NECAB1Q8N987 351 aa11.24□□□□□ -0.61
PDPN-212ENST00000621990 PDCP20941 246 aa11.24□□□□□ -0.61
PDPN-212ENST00000621990 FAM184AQ8NB25 1140 aa11.24□□□□□ -0.61
PDPN-212ENST00000621990 ISCA1Q9BUE6 129 aa11.24□□□□□ -0.61
PDPN-212ENST00000621990 TRIM28Q13263 835 aaKnown RBP11.23□□□□□ -0.61
PDPN-212ENST00000621990 DDX54Q8TDD1 881 aaKnown RBP11.23□□□□□ -0.61
PDPN-212ENST00000621990 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.23□□□□□ -0.61
PDPN-212ENST00000621990 ANO8Q9HCE9 1232 aaPredicted RBP11.23□□□□□ -0.61
PDPN-212ENST00000621990 NOL7Q9UMY1 257 aaKnown RBP11.23□□□□□ -0.61
PDPN-212ENST00000621990 EYA2O00167 538 aa11.23□□□□□ -0.61
PDPN-212ENST00000621990 HELLSQ9NRZ9 838 aa11.23□□□□□ -0.61
PDPN-212ENST00000621990 ELP1O95163 1332 aa11.23□□□□□ -0.61
PDPN-212ENST00000621990 DNM1Q05193 864 aaKnown RBP11.22□□□□□ -0.61
PDPN-212ENST00000621990 VSIG10Q8N0Z9 540 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 DNAJC2Q99543 621 aaKnown RBP11.22□□□□□ -0.61
PDPN-212ENST00000621990 FBXO3Q9UK99 471 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 NDUFB9Q9Y6M9 179 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 ITGB4P16144 1822 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 CYP21A2P08686 494 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 UVSSAQ2YD98 709 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 LARP1BQ659C4 914 aaKnown RBP11.22□□□□□ -0.61
PDPN-212ENST00000621990 DDX46Q7L014 1031 aaKnown RBP11.22□□□□□ -0.61
PDPN-212ENST00000621990 NEK1Q96PY6 1258 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 PAG1Q9NWQ8 432 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 LRP6O75581 1613 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.22□□□□□ -0.61
PDPN-212ENST00000621990 GTF3C6Q969F1 213 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 SEC62Q99442 399 aaKnown RBP11.22□□□□□ -0.61
PDPN-212ENST00000621990 FUCA2Q9BTY2 467 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 DSCC1Q9BVC3 393 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 ZBTB3Q9H5J0 574 aa11.22□□□□□ -0.61
PDPN-212ENST00000621990 PLCH1Q4KWH8 1693 aa11.21□□□□□ -0.61
PDPN-212ENST00000621990 FIBPO43427 364 aa11.21□□□□□ -0.61
PDPN-212ENST00000621990 CHGBP05060 677 aa11.21□□□□□ -0.61
PDPN-212ENST00000621990 TCIRG1Q13488 830 aa11.21□□□□□ -0.61
PDPN-212ENST00000621990 ZMYM1Q5SVZ6 1142 aa11.21□□□□□ -0.61
PDPN-212ENST00000621990 CDC37L1Q7L3B6 337 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms