RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CRY2Q49AN0 593 aa24.83■■□□□ 1.57
UPF3A-211ENST00000618700 HSP90B1P14625 803 aaKnown RBP24.82■■□□□ 1.56
UPF3A-211ENST00000618700 TGFB2P61812 414 aa24.82■■□□□ 1.56
UPF3A-211ENST00000618700 COG6Q9Y2V7 657 aa24.82■■□□□ 1.56
UPF3A-211ENST00000618700 MYH3P11055 1940 aa24.81■■□□□ 1.56
UPF3A-211ENST00000618700 PDE8AO60658 829 aa24.81■■□□□ 1.56
UPF3A-211ENST00000618700 SUCLG2Q96I99 432 aa24.81■■□□□ 1.56
UPF3A-211ENST00000618700 NLRP3Q96P20 1036 aa24.81■■□□□ 1.56
UPF3A-211ENST00000618700 GNAI3P08754 354 aa24.8■■□□□ 1.56
UPF3A-211ENST00000618700 UBTFL1P0CB47 393 aaPredicted RBP24.8■■□□□ 1.56
UPF3A-211ENST00000618700 KLHL34Q8N239 644 aa24.8■■□□□ 1.56
UPF3A-211ENST00000618700 KAZALD1Q96I82 304 aa24.8■■□□□ 1.56
UPF3A-211ENST00000618700 SYT17Q9BSW7 474 aa24.8■■□□□ 1.56
UPF3A-211ENST00000618700 PDZRN3Q9UPQ7 1066 aa24.8■■□□□ 1.56
UPF3A-211ENST00000618700 ZBTB7BO15156 539 aaPredicted RBP24.79■■□□□ 1.56
UPF3A-211ENST00000618700 CTSWP56202 376 aa24.79■■□□□ 1.56
UPF3A-211ENST00000618700 SF3B3Q15393 1217 aaKnown RBP24.79■■□□□ 1.56
UPF3A-211ENST00000618700 NLGN2Q8NFZ4 835 aa24.79■■□□□ 1.56
UPF3A-211ENST00000618700 DDX19BQ9UMR2 479 aa24.79■■□□□ 1.56
UPF3A-211ENST00000618700 SRGNP10124 158 aa24.78■■□□□ 1.56
UPF3A-211ENST00000618700 FOXO4P98177 505 aa24.78■■□□□ 1.56
UPF3A-211ENST00000618700 EPHA10Q5JZY3 1008 aa24.78■■□□□ 1.56
UPF3A-211ENST00000618700 C2CD5Q86YS7 1000 aa24.78■■□□□ 1.56
UPF3A-211ENST00000618700 BRCA1P38398 1863 aaKnown RBP24.77■■□□□ 1.56
UPF3A-211ENST00000618700 CHRNA5P30532 468 aa24.77■■□□□ 1.56
UPF3A-211ENST00000618700 H0YIN7 160 aa24.76■■□□□ 1.55
UPF3A-211ENST00000618700 DPEP1P16444 411 aa24.76■■□□□ 1.55
UPF3A-211ENST00000618700 KCNA3P22001 575 aa24.76■■□□□ 1.55
UPF3A-211ENST00000618700 HOXA10P31260 410 aaPredicted RBP24.76■■□□□ 1.55
UPF3A-211ENST00000618700 RTL9Q8NET4 1388 aa24.76■■□□□ 1.55
UPF3A-211ENST00000618700 A0A0G2JLW4 131 aa24.75■■□□□ 1.55
UPF3A-211ENST00000618700 CSF1RP07333 972 aa24.75■■□□□ 1.55
UPF3A-211ENST00000618700 RABL6Q3YEC7 729 aaPredicted RBP24.75■■□□□ 1.55
UPF3A-211ENST00000618700 ANKRD44Q8N8A2 993 aa24.75■■□□□ 1.55
UPF3A-211ENST00000618700 TTLL11Q8NHH1 800 aa24.75■■□□□ 1.55
UPF3A-211ENST00000618700 BICC1Q9H694 974 aaKnown RBP24.75■■□□□ 1.55
UPF3A-211ENST00000618700 HDAC5Q9UQL6 1122 aa24.75■■□□□ 1.55
UPF3A-211ENST00000618700 NPR1P16066 1061 aa24.74■■□□□ 1.55
UPF3A-211ENST00000618700 STYK1Q6J9G0 422 aa24.74■■□□□ 1.55
UPF3A-211ENST00000618700 MASTLQ96GX5 879 aa24.74■■□□□ 1.55
UPF3A-211ENST00000618700 LRRFIP2Q9Y608 721 aaKnown RBP24.74■■□□□ 1.55
UPF3A-211ENST00000618700 CCDC152Q4G0S7 254 aa24.73■■□□□ 1.55
UPF3A-211ENST00000618700 RPGRQ92834 1020 aaKnown RBP24.73■■□□□ 1.55
UPF3A-211ENST00000618700 COL4A1P02462 1669 aa24.72■■□□□ 1.55
UPF3A-211ENST00000618700 GNAI2P04899 355 aa24.72■■□□□ 1.55
UPF3A-211ENST00000618700 LMBR1LQ6UX01 489 aa24.72■■□□□ 1.55
UPF3A-211ENST00000618700 CRBNQ96SW2 442 aa24.72■■□□□ 1.55
UPF3A-211ENST00000618700 ZBTB40Q9NUA8 1239 aa24.72■■□□□ 1.55
UPF3A-211ENST00000618700 CRAMP1Q96RY5 1269 aa24.71■■□□□ 1.55
UPF3A-211ENST00000618700 CHMP4BQ9H444 224 aaKnown RBP24.71■■□□□ 1.55
UPF3A-211ENST00000618700 GREM2Q9H772 168 aa24.71■■□□□ 1.55
UPF3A-211ENST00000618700 FAM161AQ3B820 660 aa24.7■■□□□ 1.54
UPF3A-211ENST00000618700 RBM17Q96I25 401 aaKnown RBP24.7■■□□□ 1.54
UPF3A-211ENST00000618700 CCDC85AQ96PX6 553 aaPredicted RBP24.7■■□□□ 1.54
UPF3A-211ENST00000618700 DDX46Q7L014 1031 aaKnown RBP24.69■■□□□ 1.54
UPF3A-211ENST00000618700 ZNF622Q969S3 477 aaKnown RBP eCLIP24.69■■□□□ 1.542e-6■■■■□ 19.4
UPF3A-211ENST00000618700 MTX1Q13505 466 aa24.68■■□□□ 1.54
UPF3A-211ENST00000618700 CNKSR1Q969H4 720 aa24.68■■□□□ 1.54
UPF3A-211ENST00000618700 C1orf115Q9H7X2 142 aa24.68■■□□□ 1.54
UPF3A-211ENST00000618700 SEC31BQ9NQW1 1179 aa24.68■■□□□ 1.54
UPF3A-211ENST00000618700 PIM2Q9P1W9 311 aa24.68■■□□□ 1.54
UPF3A-211ENST00000618700 TAF1P21675 1872 aa24.67■■□□□ 1.54
UPF3A-211ENST00000618700 ITGA6P23229 1130 aa24.67■■□□□ 1.54
UPF3A-211ENST00000618700 GRAPQ13588 217 aa24.67■■□□□ 1.54
UPF3A-211ENST00000618700 GRAPLQ8TC17 118 aaPredicted RBP24.67■■□□□ 1.54
UPF3A-211ENST00000618700 CACNA1SQ13698 1873 aa24.66■■□□□ 1.54
UPF3A-211ENST00000618700 SLX4Q8IY92 1834 aa24.66■■□□□ 1.54
UPF3A-211ENST00000618700 ALDH1B1P30837 517 aa24.66■■□□□ 1.54
UPF3A-211ENST00000618700 PRPF40BQ6NWY9 871 aaKnown RBP24.66■■□□□ 1.54
UPF3A-211ENST00000618700 TTLL6Q8N841 843 aa24.66■■□□□ 1.54
UPF3A-211ENST00000618700 CELF1Q92879 486 aaKnown RBP24.65■■□□□ 1.54
UPF3A-211ENST00000618700 CHMP3Q9Y3E7 222 aa24.65■■□□□ 1.54
UPF3A-211ENST00000618700 IFIT5Q13325 482 aaKnown RBP24.64■■□□□ 1.54
UPF3A-211ENST00000618700 LRRC37AA6NMS7 1700 aa24.64■■□□□ 1.53
UPF3A-211ENST00000618700 ARFGEF1Q9Y6D6 1849 aa24.63■■□□□ 1.53
UPF3A-211ENST00000618700 ANKRD18BA2A2Z9 1011 aa24.63■■□□□ 1.53
UPF3A-211ENST00000618700 CCDC57Q2TAC2 916 aa24.63■■□□□ 1.53
UPF3A-211ENST00000618700 DALRD3Q5D0E6 543 aaKnown RBP24.63■■□□□ 1.53
UPF3A-211ENST00000618700 CEP85Q6P2H3 762 aa24.63■■□□□ 1.53
UPF3A-211ENST00000618700 CDC5LQ99459 802 aaKnown RBP24.63■■□□□ 1.53
UPF3A-211ENST00000618700 GOLGB1Q14789 3259 aaKnown RBP24.63■■□□□ 1.53
UPF3A-211ENST00000618700 RFX5P48382 616 aaPredicted RBP24.62■■□□□ 1.53
UPF3A-211ENST00000618700 IRX6P78412 446 aaPredicted RBP24.62■■□□□ 1.53
UPF3A-211ENST00000618700 C7orf43Q8WVR3 580 aa24.62■■□□□ 1.53
UPF3A-211ENST00000618700 WWC3Q9ULE0 1092 aa24.62■■□□□ 1.53
UPF3A-211ENST00000618700 SPEF2Q9C093 1822 aa24.61■■□□□ 1.53
UPF3A-211ENST00000618700 PNMA6EA0A0J9YXQ4 647 aa24.61■■□□□ 1.53
UPF3A-211ENST00000618700 PPEF1O14829 653 aaPredicted RBP24.61■■□□□ 1.53
UPF3A-211ENST00000618700 BBOX1O75936 387 aa24.61■■□□□ 1.53
UPF3A-211ENST00000618700 RPS8P62241 208 aaKnown RBP24.61■■□□□ 1.53
UPF3A-211ENST00000618700 ANKRD18AQ8IVF6 992 aa24.61■■□□□ 1.53
UPF3A-211ENST00000618700 EXOC6Q8TAG9 804 aa24.61■■□□□ 1.53
UPF3A-211ENST00000618700 SRGAP3O43295 1099 aa24.6■■□□□ 1.53
UPF3A-211ENST00000618700 ATP8B2P98198 1209 aa24.6■■□□□ 1.53
UPF3A-211ENST00000618700 AAMPQ13685 434 aa24.6■■□□□ 1.53
UPF3A-211ENST00000618700 TMC4Q7Z404 712 aa24.6■■□□□ 1.53
UPF3A-211ENST00000618700 BCS1LQ9Y276 419 aa24.6■■□□□ 1.53
UPF3A-211ENST00000618700 SNED1Q8TER0 1413 aa24.6■■□□□ 1.53
UPF3A-211ENST00000618700 SLC51AQ86UW1 340 aa24.59■■□□□ 1.53
UPF3A-211ENST00000618700 IGHMBP2P38935 993 aaKnown RBP24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms