RNA–Protein interactions for RNA: ENST00000616352.4

ACACA-238, Transcript of acetyl-CoA carboxylase alpha, human

TSL 1 (best)

Gene ACACA, Length 1,626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ACACA-238	ENST00000616352	POLD1	P28340	1107 aa		28.75	■■■□□ 2.19
ACACA-238	ENST00000616352	SPEF2	Q9C093	1822 aa		28.75	■■■□□ 2.19
ACACA-238	ENST00000616352	PNMA6E	A0A0J9YXQ4	647 aa		28.74	■■■□□ 2.19
ACACA-238	ENST00000616352	SF3B3	Q15393	1217 aa	Known RBP	28.74	■■■□□ 2.19
ACACA-238	ENST00000616352	NLRP3	Q96P20	1036 aa		28.74	■■■□□ 2.19
ACACA-238	ENST00000616352	BRIP1	Q9BX63	1249 aa		28.74	■■■□□ 2.19
ACACA-238	ENST00000616352	DLEC1	Q9Y238	1755 aa		28.73	■■■□□ 2.19
ACACA-238	ENST00000616352	KLRG2	A4D1S0	409 aa	Predicted RBP	28.72	■■■□□ 2.19
ACACA-238	ENST00000616352	RTL9	Q8NET4	1388 aa		28.72	■■■□□ 2.19
ACACA-238	ENST00000616352	KIAA1551	Q9HCM1	1747 aa		28.72	■■■□□ 2.19
ACACA-238	ENST00000616352	SRGAP3	O43295	1099 aa		28.72	■■■□□ 2.19
ACACA-238	ENST00000616352	SSH3	Q8TE77	659 aa		28.72	■■■□□ 2.19
ACACA-238	ENST00000616352	POLA2	Q14181	598 aa		28.71	■■■□□ 2.19
ACACA-238	ENST00000616352	FAM161A	Q3B820	660 aa		28.71	■■■□□ 2.19
ACACA-238	ENST00000616352	CRY2	Q49AN0	593 aa		28.71	■■■□□ 2.19
ACACA-238	ENST00000616352	GTF3C3	Q9Y5Q9	886 aa		28.71	■■■□□ 2.19
ACACA-238	ENST00000616352	CCDC152	Q4G0S7	254 aa		28.7	■■■□□ 2.19
ACACA-238	ENST00000616352	GREM2	Q9H772	168 aa		28.7	■■■□□ 2.19
ACACA-238	ENST00000616352	SPON1	Q9HCB6	807 aa		28.7	■■■□□ 2.19
ACACA-238	ENST00000616352	COL4A1	P02462	1669 aa		28.7	■■■□□ 2.18
ACACA-238	ENST00000616352	CACNA1S	Q13698	1873 aa		28.69	■■■□□ 2.18
ACACA-238	ENST00000616352	CCDC85A	Q96PX6	553 aa	Predicted RBP	28.69	■■■□□ 2.18
ACACA-238	ENST00000616352	RFX5	P48382	616 aa	Predicted RBP	28.69	■■■□□ 2.18
ACACA-238	ENST00000616352	HDAC1	Q13547	482 aa	Predicted RBP	28.69	■■■□□ 2.18
ACACA-238	ENST00000616352	PPP4R2	Q9NY27	417 aa		28.69	■■■□□ 2.18
ACACA-238	ENST00000616352	CHMP3	Q9Y3E7	222 aa		28.69	■■■□□ 2.18
ACACA-238	ENST00000616352	LRP5	O75197	1615 aa		28.68	■■■□□ 2.18
ACACA-238	ENST00000616352	PDE6B	P35913	854 aa		28.67	■■■□□ 2.18
ACACA-238	ENST00000616352	HMMR	O75330	724 aa		28.66	■■■□□ 2.18
ACACA-238	ENST00000616352	ITGA6	P23229	1130 aa		28.66	■■■□□ 2.18
ACACA-238	ENST00000616352	BRCA1	P38398	1863 aa	Known RBP	28.65	■■■□□ 2.18
ACACA-238	ENST00000616352	IGHD	P01880	384 aa		28.65	■■■□□ 2.18
ACACA-238	ENST00000616352	IFIT5	Q13325	482 aa	Known RBP	28.65	■■■□□ 2.18
ACACA-238	ENST00000616352	CCDC57	Q2TAC2	916 aa		28.65	■■■□□ 2.18
ACACA-238	ENST00000616352	SEC31B	Q9NQW1	1179 aa		28.64	■■■□□ 2.18
ACACA-238	ENST00000616352		A0A1B0GUL6	1792 aa		28.63	■■■□□ 2.17
ACACA-238	ENST00000616352	SRGN	P10124	158 aa		28.63	■■■□□ 2.17
ACACA-238	ENST00000616352	HOXA10	P31260	410 aa	Predicted RBP	28.63	■■■□□ 2.17
ACACA-238	ENST00000616352	PTPN12	Q05209	780 aa	Known RBP	28.63	■■■□□ 2.17
ACACA-238	ENST00000616352	RWDD1	Q9H446	243 aa	Predicted RBP	28.63	■■■□□ 2.17
ACACA-238	ENST00000616352	COPRS	Q9NQ92	184 aa		28.63	■■■□□ 2.17
ACACA-238	ENST00000616352	ANKRD18B	A2A2Z9	1011 aa		28.62	■■■□□ 2.17
ACACA-238	ENST00000616352	KLHDC4	Q8TBB5	520 aa		28.61	■■■□□ 2.17
ACACA-238	ENST00000616352	CCDC136	Q96JN2	1154 aa		28.61	■■■□□ 2.17
ACACA-238	ENST00000616352	RPGR	Q92834	1020 aa	Known RBP	28.61	■■■□□ 2.17
ACACA-238	ENST00000616352	PDZRN3	Q9UPQ7	1066 aa		28.61	■■■□□ 2.17
ACACA-238	ENST00000616352	PA2G4	Q9UQ80	394 aa	Known RBP	28.61	■■■□□ 2.17
ACACA-238	ENST00000616352	B4GALNT3	Q6L9W6	998 aa		28.6	■■■□□ 2.17
ACACA-238	ENST00000616352	DDX46	Q7L014	1031 aa	Known RBP	28.6	■■■□□ 2.17
ACACA-238	ENST00000616352	ZNF594	Q96JF6	807 aa	Predicted RBP	28.6	■■■□□ 2.17
ACACA-238	ENST00000616352	DCTPP1	Q9H773	170 aa		28.6	■■■□□ 2.17
ACACA-238	ENST00000616352	NOP58	Q9Y2X3	529 aa	Known RBP	28.6	■■■□□ 2.17
ACACA-238	ENST00000616352	C2CD5	Q86YS7	1000 aa		28.59	■■■□□ 2.17
ACACA-238	ENST00000616352	NPR1	P16066	1061 aa		28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	CDC5L	Q99459	802 aa	Known RBP	28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	CD2AP	Q9Y5K6	639 aa		28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	SLX4	Q8IY92	1834 aa		28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	KDM2B	Q8NHM5	1336 aa		28.58	■■■□□ 2.17
ACACA-238	ENST00000616352		H0YIN7	160 aa		28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	CELF1	Q92879	486 aa	Known RBP	28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	MASTL	Q96GX5	879 aa		28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	RBM17	Q96I25	401 aa	Known RBP	28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	CRAMP1	Q96RY5	1269 aa		28.58	■■■□□ 2.17
ACACA-238	ENST00000616352	SRCAP	Q6ZRS2	3230 aa		28.58	■■■□□ 2.16
ACACA-238	ENST00000616352	LRRC37A	A6NMS7	1700 aa		28.57	■■■□□ 2.16
ACACA-238	ENST00000616352	CHRNA5	P30532	468 aa		28.56	■■■□□ 2.16
ACACA-238	ENST00000616352	TGFB2	P61812	414 aa		28.56	■■■□□ 2.16
ACACA-238	ENST00000616352	GRAP	Q13588	217 aa		28.56	■■■□□ 2.16
ACACA-238	ENST00000616352	TAF7L	Q5H9L4	462 aa		28.56	■■■□□ 2.16
ACACA-238	ENST00000616352	GRAPL	Q8TC17	118 aa	Predicted RBP	28.56	■■■□□ 2.16
ACACA-238	ENST00000616352	SURF6	O75683	361 aa	Known RBP	28.55	■■■□□ 2.16
ACACA-238	ENST00000616352	STYK1	Q6J9G0	422 aa		28.55	■■■□□ 2.16
ACACA-238	ENST00000616352	SMC5	Q8IY18	1101 aa		28.55	■■■□□ 2.16
ACACA-238	ENST00000616352	FBXO3	Q9UK99	471 aa		28.55	■■■□□ 2.16
ACACA-238	ENST00000616352	EXOC6B	Q9Y2D4	811 aa		28.55	■■■□□ 2.16
ACACA-238	ENST00000616352	RPS8	P62241	208 aa	Known RBP	28.54	■■■□□ 2.16
ACACA-238	ENST00000616352	ANKRD18A	Q8IVF6	992 aa		28.54	■■■□□ 2.16
ACACA-238	ENST00000616352	SIL1	Q9H173	461 aa		28.54	■■■□□ 2.16
ACACA-238	ENST00000616352	CIAO1	O76071	339 aa		28.54	■■■□□ 2.16
ACACA-238	ENST00000616352	IGHMBP2	P38935	993 aa	Known RBP	28.54	■■■□□ 2.16
ACACA-238	ENST00000616352	GCC1	Q96CN9	775 aa		28.54	■■■□□ 2.16
ACACA-238	ENST00000616352	PUS3	Q9BZE2	481 aa	Known RBP	28.54	■■■□□ 2.16
ACACA-238	ENST00000616352	EYA2	O00167	538 aa		28.53	■■■□□ 2.16
ACACA-238	ENST00000616352	KCNA3	P22001	575 aa		28.53	■■■□□ 2.16
ACACA-238	ENST00000616352	ATG9A	Q7Z3C6	839 aa		28.53	■■■□□ 2.16
ACACA-238	ENST00000616352	GOLGB1	Q14789	3259 aa	Known RBP	28.52	■■■□□ 2.16
ACACA-238	ENST00000616352	LRRC24	Q50LG9	513 aa		28.52	■■■□□ 2.16
ACACA-238	ENST00000616352	LDHAL6A	Q6ZMR3	332 aa		28.52	■■■□□ 2.16
ACACA-238	ENST00000616352	RIPOR2	Q9Y4F9	1068 aa		28.52	■■■□□ 2.16
ACACA-238	ENST00000616352	DPEP1	P16444	411 aa		28.51	■■■□□ 2.15
ACACA-238	ENST00000616352	ALDH1B1	P30837	517 aa		28.51	■■■□□ 2.15
ACACA-238	ENST00000616352	MPHOSPH8	Q99549	860 aa		28.51	■■■□□ 2.15
ACACA-238	ENST00000616352	BSDC1	Q9NW68	430 aa	Predicted RBP	28.51	■■■□□ 2.15
ACACA-238	ENST00000616352		A0A0G2JLW4	131 aa		28.51	■■■□□ 2.15
ACACA-238	ENST00000616352	G3BP1	Q13283	466 aa	Known RBP eCLIP	28.51	■■■□□ 2.15
ACACA-238	ENST00000616352	HSP90AB4P	Q58FF6	505 aa		28.51	■■■□□ 2.15
ACACA-238	ENST00000616352	CENPQ	Q7L2Z9	268 aa	Predicted RBP	28.51	■■■□□ 2.15
ACACA-238	ENST00000616352	ZNF622	Q969S3	477 aa	Known RBP eCLIP	28.51	■■■□□ 2.15	2e-7	■□□□□ 9.4
ACACA-238	ENST00000616352	PPP1R1B	Q9UD71	204 aa	Predicted RBP	28.51	■■■□□ 2.15
ACACA-238	ENST00000616352	BBOX1	O75936	387 aa		28.5	■■■□□ 2.15

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms