RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 NPHP3Q7Z494 1330 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 TTC21BQ7Z4L5 1316 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 SLC27A2O14975 620 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 TMC6Q7Z403 805 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 STK11IPQ8N1F8 1099 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 GPATCH11Q8N954 259 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 GOLGA8FQ08AF8 430 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 GOLGA8DPQ0D2H9 430 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 CCDC73Q6ZRK6 1079 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 NEK11Q8NG66 645 aa15.45■□□□□ 0.06
MSH6-214ENST00000616033 DNAJC2Q99543 621 aaKnown RBP15.45■□□□□ 0.06
MSH6-214ENST00000616033 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.45■□□□□ 0.06
MSH6-214ENST00000616033 SSH2Q76I76 1423 aa15.44■□□□□ 0.06
MSH6-214ENST00000616033 CPS1P31327 1500 aa15.44■□□□□ 0.06
MSH6-214ENST00000616033 GNAT3A8MTJ3 354 aa15.44■□□□□ 0.06
MSH6-214ENST00000616033 KINO60870 393 aaKnown RBP15.44■□□□□ 0.06
MSH6-214ENST00000616033 RBM6P78332 1123 aaKnown RBP15.44■□□□□ 0.06
MSH6-214ENST00000616033 GABPB1Q06547 395 aaPredicted RBP15.44■□□□□ 0.06
MSH6-214ENST00000616033 TEFQ10587 303 aa15.44■□□□□ 0.06
MSH6-214ENST00000616033 SNW1Q13573 536 aaKnown RBP15.44■□□□□ 0.06
MSH6-214ENST00000616033 GPATCH3Q96I76 525 aa15.44■□□□□ 0.06
MSH6-214ENST00000616033 PRR36Q9H6K5 1346 aa15.44■□□□□ 0.06
MSH6-214ENST00000616033 IL17REQ8NFR9 667 aa15.44■□□□□ 0.06
MSH6-214ENST00000616033 SEC62Q99442 399 aaKnown RBP15.44■□□□□ 0.06
MSH6-214ENST00000616033 EDC4Q6P2E9 1401 aaKnown RBP15.43■□□□□ 0.06
MSH6-214ENST00000616033 SLU7O95391 586 aaKnown RBP15.43■□□□□ 0.06
MSH6-214ENST00000616033 ARHGAP29Q52LW3 1261 aa15.43■□□□□ 0.06
MSH6-214ENST00000616033 ZCCHC17Q9NP64 241 aaKnown RBP15.43■□□□□ 0.06
MSH6-214ENST00000616033 PREX1Q8TCU6 1659 aa15.43■□□□□ 0.06
MSH6-214ENST00000616033 CPSF1Q10570 1443 aaKnown RBP15.43■□□□□ 0.06
MSH6-214ENST00000616033 ALKQ9UM73 1620 aa15.43■□□□□ 0.06
MSH6-214ENST00000616033 NLRP6P59044 892 aa15.43■□□□□ 0.06
MSH6-214ENST00000616033 LMOD2Q6P5Q4 547 aa15.43■□□□□ 0.06
MSH6-214ENST00000616033 SEC31AO94979 1220 aaKnown RBP15.43■□□□□ 0.06
MSH6-214ENST00000616033 SKIDA1Q1XH10 827 aa15.43■□□□□ 0.06
MSH6-214ENST00000616033 OTUD7BQ6GQQ9 843 aa15.43■□□□□ 0.06
MSH6-214ENST00000616033 ZNF589Q86UQ0 364 aaPredicted RBP15.43■□□□□ 0.06
MSH6-214ENST00000616033 CCDC34Q96HJ3 373 aa15.43■□□□□ 0.06
MSH6-214ENST00000616033 NCOA5Q9HCD5 579 aaKnown RBP15.43■□□□□ 0.06
MSH6-214ENST00000616033 PSMA5P28066 241 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 SF3A1Q15459 793 aaKnown RBP15.42■□□□□ 0.06
MSH6-214ENST00000616033 SLFNL1Q499Z3 407 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 TDRD7Q8NHU6 1098 aaKnown RBP15.42■□□□□ 0.06
MSH6-214ENST00000616033 DNAAF4Q8WXU2 420 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 ZSWIM4Q9H7M6 989 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 DNAI1Q9UI46 699 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 MORC2Q9Y6X9 1032 aaPredicted RBP15.42■□□□□ 0.06
MSH6-214ENST00000616033 A0A1B0GVL5 298 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 MYCNP04198 464 aaPredicted RBP15.42■□□□□ 0.06
MSH6-214ENST00000616033 GYS2P54840 703 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 FSIP1Q8NA03 581 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 TMEM131LA2VDJ0 1609 aa15.42■□□□□ 0.06
MSH6-214ENST00000616033 URI1O94763 535 aaPredicted RBP15.42■□□□□ 0.06
MSH6-214ENST00000616033 G3BP1Q13283 466 aaKnown RBP eCLIP15.42■□□□□ 0.064e-7■■■■□ 22.8
MSH6-214ENST00000616033 CDK12Q9NYV4 1490 aaPredicted RBP15.41■□□□□ 0.06
MSH6-214ENST00000616033 CAPN2P17655 700 aa15.41■□□□□ 0.06
MSH6-214ENST00000616033 NECTIN1Q15223 517 aa15.41■□□□□ 0.06
MSH6-214ENST00000616033 RNF20Q5VTR2 975 aa15.41■□□□□ 0.06
MSH6-214ENST00000616033 Q6ZUG5 572 aa15.41■□□□□ 0.06
MSH6-214ENST00000616033 ROBO2Q9HCK4 1378 aa15.41■□□□□ 0.06
MSH6-214ENST00000616033 CRB1P82279 1406 aa15.41■□□□□ 0.06
MSH6-214ENST00000616033 IFNKQ9P0W0 207 aa15.41■□□□□ 0.06
MSH6-214ENST00000616033 LOC102724159A0A0B4J2E5 919 aa15.4■□□□□ 0.06
MSH6-214ENST00000616033 POLR3DP05423 398 aaPredicted RBP15.4■□□□□ 0.06
MSH6-214ENST00000616033 LMOD1P29536 600 aaPredicted RBP15.4■□□□□ 0.06
MSH6-214ENST00000616033 PWP2Q15269 919 aaKnown RBP15.4■□□□□ 0.06
MSH6-214ENST00000616033 TAF3Q5VWG9 929 aa15.4■□□□□ 0.06
MSH6-214ENST00000616033 MNS1Q8NEH6 495 aa15.4■□□□□ 0.06
MSH6-214ENST00000616033 LGR6Q9HBX8 967 aa15.4■□□□□ 0.06
MSH6-214ENST00000616033 ATP7BP35670 1465 aa15.4■□□□□ 0.06
MSH6-214ENST00000616033 EAF2Q96CJ1 260 aaPredicted RBP15.4■□□□□ 0.06
MSH6-214ENST00000616033 GOLPH3LQ9H4A5 285 aa15.4■□□□□ 0.06
MSH6-214ENST00000616033 ZNF446Q9NWS9 450 aa15.4■□□□□ 0.06
MSH6-214ENST00000616033 HNRNPH2P55795 449 aaKnown RBP15.39■□□□□ 0.05
MSH6-214ENST00000616033 TOB2Q14106 344 aaPredicted RBP15.39■□□□□ 0.05
MSH6-214ENST00000616033 C10orf67Q8IYJ2 551 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 PRR29P0C7W0 189 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 STX1AQ16623 288 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 ERO1AQ96HE7 468 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 MAP3K2Q9Y2U5 619 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 TMEM2Q9UHN6 1383 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 RPS6KB1P23443 525 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 PIP4K2AP48426 406 aaPredicted RBP15.39■□□□□ 0.05
MSH6-214ENST00000616033 MPRIPQ6WCQ1 1025 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 UBXN4Q92575 508 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 EVI5LQ96CN4 794 aa15.39■□□□□ 0.05
MSH6-214ENST00000616033 HTATSF1O43719 755 aaKnown RBP15.38■□□□□ 0.05
MSH6-214ENST00000616033 CLCN6P51797 869 aa15.38■□□□□ 0.05
MSH6-214ENST00000616033 RGS22Q8NE09 1264 aa15.38■□□□□ 0.05
MSH6-214ENST00000616033 USP28Q96RU2 1077 aa15.38■□□□□ 0.05
MSH6-214ENST00000616033 RSPH14Q9UHP6 348 aa15.38■□□□□ 0.05
MSH6-214ENST00000616033 PRAMEF22A3QJZ6 481 aa15.38■□□□□ 0.05
MSH6-214ENST00000616033 APOBRQ0VD83 1088 aa15.38■□□□□ 0.05
MSH6-214ENST00000616033 KIF20BQ96Q89 1820 aa15.38■□□□□ 0.05
MSH6-214ENST00000616033 SFPQP23246 707 aaKnown RBP eCLIP15.37■□□□□ 0.05
MSH6-214ENST00000616033 IQCB1Q15051 598 aa15.37■□□□□ 0.05
MSH6-214ENST00000616033 HSP90AB4PQ58FF6 505 aa15.37■□□□□ 0.05
MSH6-214ENST00000616033 CEP57L1Q8IYX8 460 aa15.37■□□□□ 0.05
MSH6-214ENST00000616033 XPO4Q9C0E2 1151 aaKnown RBP15.37■□□□□ 0.05
MSH6-214ENST00000616033 CCZ1BP86790 482 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms