RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 CCDC57Q2TAC2 916 aa18.33■□□□□ 0.53
CD48-203ENST00000613788 PCDHB15Q9Y5E8 787 aa18.33■□□□□ 0.53
CD48-203ENST00000613788 H0YIN7 160 aa18.33■□□□□ 0.52
CD48-203ENST00000613788 IFIT5Q13325 482 aaKnown RBP18.33■□□□□ 0.52
CD48-203ENST00000613788 CRY2Q49AN0 593 aa18.33■□□□□ 0.52
CD48-203ENST00000613788 C3orf67Q6ZVT6 689 aa18.33■□□□□ 0.52
CD48-203ENST00000613788 RPGRQ92834 1020 aaKnown RBP18.33■□□□□ 0.52
CD48-203ENST00000613788 C10orf71Q711Q0 1435 aa18.32■□□□□ 0.52
CD48-203ENST00000613788 DDX46Q7L014 1031 aaKnown RBP18.32■□□□□ 0.52
CD48-203ENST00000613788 CCDC85AQ96PX6 553 aaPredicted RBP18.32■□□□□ 0.52
CD48-203ENST00000613788 GREM2Q9H772 168 aa18.32■□□□□ 0.52
CD48-203ENST00000613788 CD2APQ9Y5K6 639 aa18.32■□□□□ 0.52
CD48-203ENST00000613788 RTL9Q8NET4 1388 aa18.31■□□□□ 0.52
CD48-203ENST00000613788 DDX60Q8IY21 1712 aaKnown RBP18.31■□□□□ 0.52
CD48-203ENST00000613788 ANKRD18BA2A2Z9 1011 aa18.31■□□□□ 0.52
CD48-203ENST00000613788 ITGA6P23229 1130 aa18.31■□□□□ 0.52
CD48-203ENST00000613788 FAM161AQ3B820 660 aa18.31■□□□□ 0.52
CD48-203ENST00000613788 C2CD5Q86YS7 1000 aa18.31■□□□□ 0.52
CD48-203ENST00000613788 SSH3Q8TE77 659 aa18.31■□□□□ 0.52
CD48-203ENST00000613788 PNMA6EA0A0J9YXQ4 647 aa18.3■□□□□ 0.52
CD48-203ENST00000613788 SRGNP10124 158 aa18.3■□□□□ 0.52
CD48-203ENST00000613788 NPR1P16066 1061 aa18.3■□□□□ 0.52
CD48-203ENST00000613788 TGFB2P61812 414 aa18.3■□□□□ 0.52
CD48-203ENST00000613788 RBM17Q96I25 401 aaKnown RBP18.3■□□□□ 0.52
CD48-203ENST00000613788 CDC5LQ99459 802 aaKnown RBP18.3■□□□□ 0.52
CD48-203ENST00000613788 PPP1R1BQ9UD71 204 aaPredicted RBP18.3■□□□□ 0.52
CD48-203ENST00000613788 LAMB2P55268 1798 aa18.3■□□□□ 0.52
CD48-203ENST00000613788 HOXA10P31260 410 aaPredicted RBP18.29■□□□□ 0.52
CD48-203ENST00000613788 POLA2Q14181 598 aa18.29■□□□□ 0.52
CD48-203ENST00000613788 TAF7LQ5H9L4 462 aa18.29■□□□□ 0.52
CD48-203ENST00000613788 SIRT2Q8IXJ6 389 aa18.29■□□□□ 0.52
CD48-203ENST00000613788 MASTLQ96GX5 879 aa18.29■□□□□ 0.52
CD48-203ENST00000613788 RWDD1Q9H446 243 aaPredicted RBP18.29■□□□□ 0.52
CD48-203ENST00000613788 ALDH1B1P30837 517 aa18.28■□□□□ 0.52
CD48-203ENST00000613788 CRAMP1Q96RY5 1269 aa18.28■□□□□ 0.52
CD48-203ENST00000613788 SEC31BQ9NQW1 1179 aa18.28■□□□□ 0.52
CD48-203ENST00000613788 RFX5P48382 616 aaPredicted RBP18.28■□□□□ 0.52
CD48-203ENST00000613788 HDAC1Q13547 482 aaPredicted RBP18.28■□□□□ 0.52
CD48-203ENST00000613788 STYK1Q6J9G0 422 aa18.28■□□□□ 0.52
CD48-203ENST00000613788 KLHL34Q8N239 644 aa18.28■□□□□ 0.52
CD48-203ENST00000613788 PPP4R2Q9NY27 417 aa18.28■□□□□ 0.52
CD48-203ENST00000613788 MYH3P11055 1940 aa18.27■□□□□ 0.52
CD48-203ENST00000613788 IGHMBP2P38935 993 aaKnown RBP18.27■□□□□ 0.51
CD48-203ENST00000613788 ANKRD18AQ8IVF6 992 aa18.27■□□□□ 0.51
CD48-203ENST00000613788 ZNF622Q969S3 477 aaKnown RBP eCLIP18.27■□□□□ 0.51
CD48-203ENST00000613788 COPRSQ9NQ92 184 aa18.27■□□□□ 0.51
CD48-203ENST00000613788 TNRC6CQ9HCJ0 1690 aaKnown RBP18.26■□□□□ 0.51
CD48-203ENST00000613788 CHRNA5P30532 468 aa18.26■□□□□ 0.51
CD48-203ENST00000613788 RPS8P62241 208 aaKnown RBP18.26■□□□□ 0.51
CD48-203ENST00000613788 PTPN12Q05209 780 aaKnown RBP18.26■□□□□ 0.51
CD48-203ENST00000613788 GRAPQ13588 217 aa18.26■□□□□ 0.51
CD48-203ENST00000613788 GRAPLQ8TC17 118 aaPredicted RBP18.26■□□□□ 0.51
CD48-203ENST00000613788 CNKSR1Q969H4 720 aa18.26■□□□□ 0.51
CD48-203ENST00000613788 ANKRD31Q8N7Z5 1873 aa18.26■□□□□ 0.51
CD48-203ENST00000613788 BBOX1O75936 387 aa18.25■□□□□ 0.51
CD48-203ENST00000613788 LDHAL6AQ6ZMR3 332 aa18.25■□□□□ 0.51
CD48-203ENST00000613788 CCDC136Q96JN2 1154 aa18.25■□□□□ 0.51
CD48-203ENST00000613788 MPHOSPH8Q99549 860 aa18.25■□□□□ 0.51
CD48-203ENST00000613788 FBXO3Q9UK99 471 aa18.25■□□□□ 0.51
CD48-203ENST00000613788 A0A0G2JLW4 131 aa18.24■□□□□ 0.51
CD48-203ENST00000613788 SURF6O75683 361 aaKnown RBP18.24■□□□□ 0.51
CD48-203ENST00000613788 DPEP1P16444 411 aa18.24■□□□□ 0.51
CD48-203ENST00000613788 G3BP1Q13283 466 aaKnown RBP eCLIP18.24■□□□□ 0.51
CD48-203ENST00000613788 HSP90AB4PQ58FF6 505 aa18.24■□□□□ 0.51
CD48-203ENST00000613788 KLHDC4Q8TBB5 520 aa18.24■□□□□ 0.51
CD48-203ENST00000613788 CELF1Q92879 486 aaKnown RBP18.24■□□□□ 0.51
CD48-203ENST00000613788 ZNF594Q96JF6 807 aaPredicted RBP18.24■□□□□ 0.51
CD48-203ENST00000613788 TMC4Q7Z404 712 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 DCTPP1Q9H773 170 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 BSDC1Q9NW68 430 aaPredicted RBP18.23■□□□□ 0.51
CD48-203ENST00000613788 PA2G4Q9UQ80 394 aaKnown RBP18.23■□□□□ 0.51
CD48-203ENST00000613788 NOP58Q9Y2X3 529 aaKnown RBP18.23■□□□□ 0.51
CD48-203ENST00000613788 KIF13BQ9NQT8 1826 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 EYA2O00167 538 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 IGHDP01880 384 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 FHDC1Q9C0D6 1143 aaPredicted RBP18.23■□□□□ 0.51
CD48-203ENST00000613788 SIL1Q9H173 461 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 CNNM1Q9NRU3 951 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 PIM2Q9P1W9 311 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 GTF3C3Q9Y5Q9 886 aa18.23■□□□□ 0.51
CD48-203ENST00000613788 CIAO1O76071 339 aa18.22■□□□□ 0.51
CD48-203ENST00000613788 KCNA3P22001 575 aa18.22■□□□□ 0.51
CD48-203ENST00000613788 OS9Q13438 667 aaPredicted RBP18.22■□□□□ 0.51
CD48-203ENST00000613788 TTLL6Q8N841 843 aa18.22■□□□□ 0.51
CD48-203ENST00000613788 GCC1Q96CN9 775 aa18.22■□□□□ 0.51
CD48-203ENST00000613788 RAB11FIP3O75154 756 aa18.21■□□□□ 0.51
CD48-203ENST00000613788 IL15P40933 162 aaPredicted RBP18.21■□□□□ 0.51
CD48-203ENST00000613788 TMX4Q9H1E5 349 aaPredicted RBP18.21■□□□□ 0.51
CD48-203ENST00000613788 ERC1Q8IUD2 1116 aa18.2■□□□□ 0.5
CD48-203ENST00000613788 PUS3Q9BZE2 481 aaKnown RBP18.2■□□□□ 0.5
CD48-203ENST00000613788 EXOC6BQ9Y2D4 811 aa18.2■□□□□ 0.5
CD48-203ENST00000613788 RIPOR2Q9Y4F9 1068 aa18.2■□□□□ 0.5
CD48-203ENST00000613788 PPEF1O14829 653 aaPredicted RBP18.19■□□□□ 0.5
CD48-203ENST00000613788 LRRC24Q50LG9 513 aa18.19■□□□□ 0.5
CD48-203ENST00000613788 PRPF40BQ6NWY9 871 aaKnown RBP18.19■□□□□ 0.5
CD48-203ENST00000613788 SP8Q8IXZ3 490 aa18.19■□□□□ 0.5
CD48-203ENST00000613788 SYT17Q9BSW7 474 aa18.19■□□□□ 0.5
CD48-203ENST00000613788 B4GALNT3Q6L9W6 998 aa18.18■□□□□ 0.5
CD48-203ENST00000613788 ATG9AQ7Z3C6 839 aa18.18■□□□□ 0.5
CD48-203ENST00000613788 NLGN2Q8NFZ4 835 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms