RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.02□□□□□ -1.13
LINC00540-201ENST00000611481 M0R2N6 131 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 H2AFB1P0C5Y9 115 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 H2AFB2P0C5Z0 115 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 ELNP15502 786 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 RAC1P63000 192 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 CLDN10P78369 228 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 ADGRE1Q14246 886 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 ZNF280CQ8ND82 737 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 KIAA1024Q9UPX6 916 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 PTPRGP23470 1445 aa8.02□□□□□ -1.13
LINC00540-201ENST00000611481 USP17L3A6NCW0 530 aa8.01□□□□□ -1.13
LINC00540-201ENST00000611481 USP17L4A6NCW7 530 aa8.01□□□□□ -1.13
LINC00540-201ENST00000611481 NRG1Q02297 640 aaPredicted RBP8.01□□□□□ -1.13
LINC00540-201ENST00000611481 TBC1D8BQ0IIM8 1120 aa8.01□□□□□ -1.13
LINC00540-201ENST00000611481 MBTPS1Q14703 1052 aa8.01□□□□□ -1.13
LINC00540-201ENST00000611481 USP17L2Q6R6M4 530 aa8.01□□□□□ -1.13
LINC00540-201ENST00000611481 USP17L1Q7RTZ2 530 aa8.01□□□□□ -1.13
LINC00540-201ENST00000611481 LARGE2Q8N3Y3 721 aa8.01□□□□□ -1.13
LINC00540-201ENST00000611481 UBE2OQ9C0C9 1292 aaKnown RBP8.01□□□□□ -1.13
LINC00540-201ENST00000611481 EFCC1Q9HA90 598 aa8.01□□□□□ -1.13
LINC00540-201ENST00000611481 RIMS1Q86UR5 1692 aaKnown RBP8.01□□□□□ -1.13
LINC00540-201ENST00000611481 BCORL1Q5H9F3 1711 aa8□□□□□ -1.13
LINC00540-201ENST00000611481 A0A0A0MRY4 1105 aa8□□□□□ -1.13
LINC00540-201ENST00000611481 PALM3A6NDB9 673 aaPredicted RBP8□□□□□ -1.13
LINC00540-201ENST00000611481 PPP1R12BO60237 982 aaPredicted RBP8□□□□□ -1.13
LINC00540-201ENST00000611481 SELPP16109 830 aa8□□□□□ -1.13
LINC00540-201ENST00000611481 HIF1AQ16665 826 aa8□□□□□ -1.13
LINC00540-201ENST00000611481 TXNRD3Q86VQ6 643 aa8□□□□□ -1.13
LINC00540-201ENST00000611481 LENG1Q96BZ8 264 aaPredicted RBP8□□□□□ -1.13
LINC00540-201ENST00000611481 SLC6A14Q9UN76 642 aa8□□□□□ -1.13
LINC00540-201ENST00000611481 KRTAP9-6A0A140TA67 174 aa7.99□□□□□ -1.13
LINC00540-201ENST00000611481 RAD21O60216 631 aa7.99□□□□□ -1.13
LINC00540-201ENST00000611481 BTLAQ7Z6A9 289 aa7.99□□□□□ -1.13
LINC00540-201ENST00000611481 NBPF11Q86T75 865 aa7.99□□□□□ -1.13
LINC00540-201ENST00000611481 OGFOD1Q8N543 542 aa7.99□□□□□ -1.13
LINC00540-201ENST00000611481 IGFLR1Q9H665 355 aa7.99□□□□□ -1.13
LINC00540-201ENST00000611481 JPH1Q9HDC5 661 aaPredicted RBP7.99□□□□□ -1.13
LINC00540-201ENST00000611481 RBM19Q9Y4C8 960 aaKnown RBP7.99□□□□□ -1.13
LINC00540-201ENST00000611481 ALDH16A1Q8IZ83 802 aa7.98□□□□□ -1.13
LINC00540-201ENST00000611481 TSEN2Q8NCE0 465 aaKnown RBP7.98□□□□□ -1.13
LINC00540-201ENST00000611481 POM121Q96HA1 1249 aa7.98□□□□□ -1.13
LINC00540-201ENST00000611481 YEATS2Q9ULM3 1422 aa7.97□□□□□ -1.13
LINC00540-201ENST00000611481 UBAP1LF5GYI3 381 aa7.97□□□□□ -1.13
LINC00540-201ENST00000611481 ATP9BO43861 1147 aa7.97□□□□□ -1.13
LINC00540-201ENST00000611481 SIX5Q8N196 739 aa7.97□□□□□ -1.13
LINC00540-201ENST00000611481 STAG2Q8N3U4 1231 aa7.97□□□□□ -1.13
LINC00540-201ENST00000611481 NUDT8Q8WV74 236 aa7.97□□□□□ -1.13
LINC00540-201ENST00000611481 MKRN1Q9UHC7 482 aaKnown RBP7.97□□□□□ -1.13
LINC00540-201ENST00000611481 IQSEC2Q5JU85 1478 aa7.96□□□□□ -1.13
LINC00540-201ENST00000611481 C21orf2O43822 256 aa7.96□□□□□ -1.14
LINC00540-201ENST00000611481 ADAMTS19Q8TE59 1207 aa7.96□□□□□ -1.14
LINC00540-201ENST00000611481 CD109Q6YHK3 1445 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 ERICH3Q5RHP9 1530 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 MAGI3Q5TCQ9 1506 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 POM121CA8CG34 1229 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 AFF1P51825 1210 aaKnown RBP7.95□□□□□ -1.14
LINC00540-201ENST00000611481 LRP8Q14114 963 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 HDGFL1Q5TGJ6 251 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 PSAPL1Q6NUJ1 521 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 SHISA2Q6UWI4 295 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 GAS2L2Q8NHY3 880 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 ZNF594Q96JF6 807 aaPredicted RBP7.95□□□□□ -1.14
LINC00540-201ENST00000611481 PNMA5Q96PV4 448 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 C2orf49Q9BVC5 232 aaPredicted RBP7.95□□□□□ -1.14
LINC00540-201ENST00000611481 DNAJB12Q9NXW2 375 aaKnown RBP7.95□□□□□ -1.14
LINC00540-201ENST00000611481 USP21Q9UK80 565 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 LTBP4Q8N2S1 1624 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 ATAD2Q6PL18 1390 aa7.95□□□□□ -1.14
LINC00540-201ENST00000611481 RGS9O75916 674 aaPredicted RBP7.94□□□□□ -1.14
LINC00540-201ENST00000611481 IER5Q5VY09 327 aa7.94□□□□□ -1.14
LINC00540-201ENST00000611481 DMRTC2Q8IXT2 367 aaPredicted RBP7.94□□□□□ -1.14
LINC00540-201ENST00000611481 FMR1NBQ8N0W7 255 aaPredicted RBP7.94□□□□□ -1.14
LINC00540-201ENST00000611481 TP53INP1Q96A56 240 aa7.94□□□□□ -1.14
LINC00540-201ENST00000611481 UCN2Q96RP3 112 aa7.94□□□□□ -1.14
LINC00540-201ENST00000611481 GSX2Q9BZM3 304 aa7.94□□□□□ -1.14
LINC00540-201ENST00000611481 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.94□□□□□ -1.14
LINC00540-201ENST00000611481 STRCQ7RTU9 1775 aa7.94□□□□□ -1.14
LINC00540-201ENST00000611481 UHRF1BP1LA0JNW5 1464 aa7.94□□□□□ -1.14
LINC00540-201ENST00000611481 HSPA1LP34931 641 aa7.93□□□□□ -1.14
LINC00540-201ENST00000611481 CCINQ13939 588 aa7.93□□□□□ -1.14
LINC00540-201ENST00000611481 SCG3Q8WXD2 468 aaKnown RBP7.93□□□□□ -1.14
LINC00540-201ENST00000611481 NGLY1Q96IV0 654 aa7.93□□□□□ -1.14
LINC00540-201ENST00000611481 TNIKQ9UKE5 1360 aa7.93□□□□□ -1.14
LINC00540-201ENST00000611481 UACAQ9BZF9 1416 aa7.93□□□□□ -1.14
LINC00540-201ENST00000611481 DKK1O94907 266 aa7.92□□□□□ -1.14
LINC00540-201ENST00000611481 PCSK7Q16549 785 aa7.92□□□□□ -1.14
LINC00540-201ENST00000611481 NAGPAQ9UK23 515 aa7.92□□□□□ -1.14
LINC00540-201ENST00000611481 KDM5BQ9UGL1 1544 aa7.92□□□□□ -1.14
LINC00540-201ENST00000611481 CFAP43Q8NDM7 1665 aa7.92□□□□□ -1.14
LINC00540-201ENST00000611481 TGFBR3LH3BV60 316 aa7.91□□□□□ -1.14
LINC00540-201ENST00000611481 NFKB1P19838 968 aa7.91□□□□□ -1.14
LINC00540-201ENST00000611481 RTN1Q16799 776 aa7.91□□□□□ -1.14
LINC00540-201ENST00000611481 DTWD1Q8N5C7 304 aa7.91□□□□□ -1.14
LINC00540-201ENST00000611481 SSBP4Q9BWG4 385 aaPredicted RBP7.91□□□□□ -1.14
LINC00540-201ENST00000611481 WRNQ14191 1432 aaPredicted RBP eCLIP7.91□□□□□ -1.14
LINC00540-201ENST00000611481 WDR7Q9Y4E6 1490 aa7.91□□□□□ -1.14
LINC00540-201ENST00000611481 ZCCHC11Q5TAX3 1644 aaKnown RBP7.91□□□□□ -1.14
LINC00540-201ENST00000611481 ARAP3Q8WWN8 1544 aa7.9□□□□□ -1.14
LINC00540-201ENST00000611481 PTPRTO14522 1441 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms