RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 ADARB2Q9NS39 739 aaKnown RBP6.79□□□□□ -1.32
VRK3-226ENST00000602029 TRMT112Q9UI30 125 aaKnown RBP6.79□□□□□ -1.32
VRK3-226ENST00000602029 ZNRF3Q9ULT6 936 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 BCORQ6W2J9 1755 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 UBN2Q6ZU65 1347 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 KLRG2A4D1S0 409 aaPredicted RBP6.78□□□□□ -1.32
VRK3-226ENST00000602029 C6orf229H3BNL8 230 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 H7C1D1 291 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 RIMBP2O15034 1052 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 RGL2O15211 777 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 NTSR2O95665 410 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 EIF4A1P60842 406 aaKnown RBP6.78□□□□□ -1.32
VRK3-226ENST00000602029 NFE2L2Q16236 605 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 CRY2Q49AN0 593 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 HSP90AB3PQ58FF7 597 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 HABP4Q5JVS0 413 aaKnown RBP6.78□□□□□ -1.32
VRK3-226ENST00000602029 SLC51AQ86UW1 340 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 GPRC5DQ9NZD1 345 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 ATP6V0A2Q9Y487 856 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 TLL2Q9Y6L7 1015 aa6.78□□□□□ -1.32
VRK3-226ENST00000602029 ABCC4O15439 1325 aa6.77□□□□□ -1.32
VRK3-226ENST00000602029 POLR2AP24928 1970 aaKnown RBP6.77□□□□□ -1.33
VRK3-226ENST00000602029 HOXA10P31260 410 aaPredicted RBP6.77□□□□□ -1.33
VRK3-226ENST00000602029 HUNKP57058 714 aa6.77□□□□□ -1.33
VRK3-226ENST00000602029 RIPK4P57078 832 aa6.77□□□□□ -1.33
VRK3-226ENST00000602029 CXCL9Q07325 125 aa6.77□□□□□ -1.33
VRK3-226ENST00000602029 LMOD3Q0VAK6 560 aa6.77□□□□□ -1.33
VRK3-226ENST00000602029 RTL5Q5HYW3 569 aaPredicted RBP6.77□□□□□ -1.33
VRK3-226ENST00000602029 GIGYF2Q6Y7W6 1299 aaKnown RBP6.77□□□□□ -1.33
VRK3-226ENST00000602029 C3orf67Q6ZVT6 689 aa6.77□□□□□ -1.33
VRK3-226ENST00000602029 USP48Q86UV5 1035 aa6.77□□□□□ -1.33
VRK3-226ENST00000602029 ZIC5Q96T25 663 aa6.77□□□□□ -1.33
VRK3-226ENST00000602029 NSFL1CQ9UNZ2 370 aaKnown RBP6.77□□□□□ -1.33
VRK3-226ENST00000602029 CEP290O15078 2479 aa6.77□□□□□ -1.33
VRK3-226ENST00000602029 SIPA1L3O60292 1781 aaPredicted RBP6.77□□□□□ -1.33
VRK3-226ENST00000602029 DLL1O00548 723 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 CA12O43570 354 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 BBOX1O75936 387 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 MAP2K2P36507 400 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 FXR1P51114 621 aaKnown RBP eCLIP6.76□□□□□ -1.33
VRK3-226ENST00000602029 WASHC4Q2M389 1173 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 TBC1D10BQ4KMP7 808 aaPredicted RBP6.76□□□□□ -1.33
VRK3-226ENST00000602029 CST9Q5W186 159 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 CDC37L1Q7L3B6 337 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 COPS6Q7L5N1 327 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 KRT26Q7Z3Y9 468 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 MICALL2Q8IY33 904 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 ZNF34Q8IZ26 560 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 C2orf69Q8N8R5 385 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 XAGE3Q8WTP9 111 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 FBXW7Q969H0 707 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 DCPSQ96C86 337 aaKnown RBP6.76□□□□□ -1.33
VRK3-226ENST00000602029 DBNDD1Q9H9R9 158 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.76□□□□□ -1.33
VRK3-226ENST00000602029 CNOT7Q9UIV1 285 aaKnown RBP6.76□□□□□ -1.33
VRK3-226ENST00000602029 ERBB4Q15303 1308 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 SH3TC1Q8TE82 1336 aa6.76□□□□□ -1.33
VRK3-226ENST00000602029 BRCA2P51587 3418 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 CENPFP49454 3210 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 IBTKQ9P2D0 1353 aaPredicted RBP6.75□□□□□ -1.33
VRK3-226ENST00000602029 KIAA0100Q14667 2235 aaKnown RBP6.75□□□□□ -1.33
VRK3-226ENST00000602029 ZNF157P51786 506 aaPredicted RBP6.75□□□□□ -1.33
VRK3-226ENST00000602029 KIAA2012Q0VF49 1180 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 NOGQ13253 232 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 GRAPQ13588 217 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 TTLL12Q14166 644 aaPredicted RBP6.75□□□□□ -1.33
VRK3-226ENST00000602029 WDR43Q15061 677 aaKnown RBP eCLIP6.75□□□□□ -1.33
VRK3-226ENST00000602029 DOK7Q18PE1 504 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 PROSER3Q2NL68 480 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 SAMD7Q7Z3H4 446 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 SAPCD2Q86UD0 394 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 SULF1Q8IWU6 871 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 SP8Q8IXZ3 490 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 CCDC146Q8IYE0 955 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 GRAPLQ8TC17 118 aaPredicted RBP6.75□□□□□ -1.33
VRK3-226ENST00000602029 TRPM4Q8TD43 1214 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 EYA3Q99504 573 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 ANKIB1Q9P2G1 1089 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 ZBTB12Q9Y330 459 aaPredicted RBP6.75□□□□□ -1.33
VRK3-226ENST00000602029 RIC1Q4ADV7 1423 aa6.75□□□□□ -1.33
VRK3-226ENST00000602029 COL4A5P29400 1685 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 SHTN1A0MZ66 631 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 ADM5C9JUS6 153 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 ATP5J2-PTCD1G3V325 749 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 PSMD14O00487 310 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 NPM3O75607 178 aaKnown RBP6.74□□□□□ -1.33
VRK3-226ENST00000602029 BRPF1P55201 1214 aaPredicted RBP6.74□□□□□ -1.33
VRK3-226ENST00000602029 HDGFL1Q5TGJ6 251 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 NLRP10Q86W26 655 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 VPS33BQ9H267 617 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 GBA2Q9HCG7 927 aaPredicted RBP6.74□□□□□ -1.33
VRK3-226ENST00000602029 LAMB4A4D0S4 1761 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 CDHR2Q9BYE9 1310 aa6.74□□□□□ -1.33
VRK3-226ENST00000602029 ECE2O60344 883 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 TRPA1O75762 1119 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 UFL1O94874 794 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 GOLGA2Q08379 1002 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 TCIRG1Q13488 830 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 KIF4BQ2VIQ3 1234 aa6.73□□□□□ -1.33
VRK3-226ENST00000602029 RGMBQ6NW40 437 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms