RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 FRAT1Q92837 279 aaPredicted RBP23.03■■□□□ 1.28
LIG1-216ENST00000598938 SRCIN1Q9C0H9 1055 aa23.03■■□□□ 1.28
LIG1-216ENST00000598938 TRIM27P14373 513 aa23.02■■□□□ 1.28
LIG1-216ENST00000598938 ABCC4O15439 1325 aa23.02■■□□□ 1.28
LIG1-216ENST00000598938 DDX60Q8IY21 1712 aaKnown RBP23.02■■□□□ 1.28
LIG1-216ENST00000598938 LAMB2P55268 1798 aa23.01■■□□□ 1.27
LIG1-216ENST00000598938 H7C1W4 665 aa23.01■■□□□ 1.27
LIG1-216ENST00000598938 ZKSCAN2Q63HK3 967 aa23.01■■□□□ 1.27
LIG1-216ENST00000598938 CDHR2Q9BYE9 1310 aa23.01■■□□□ 1.27
LIG1-216ENST00000598938 LTBP3Q9NS15 1303 aa23.01■■□□□ 1.27
LIG1-216ENST00000598938 HSPA1AP0DMV8 641 aaKnown RBP23■■□□□ 1.27
LIG1-216ENST00000598938 HSPA1BP0DMV9 641 aaKnown RBP23■■□□□ 1.27
LIG1-216ENST00000598938 HCLS1P14317 486 aaPredicted RBP23■■□□□ 1.27
LIG1-216ENST00000598938 CRY2Q49AN0 593 aa23■■□□□ 1.27
LIG1-216ENST00000598938 RTL5Q5HYW3 569 aaPredicted RBP23■■□□□ 1.27
LIG1-216ENST00000598938 IRS4O14654 1257 aaPredicted RBP22.99■■□□□ 1.27
LIG1-216ENST00000598938 SRGNP10124 158 aa22.99■■□□□ 1.27
LIG1-216ENST00000598938 CCT4P50991 539 aaKnown RBP22.99■■□□□ 1.27
LIG1-216ENST00000598938 CASP7P55210 303 aa22.99■■□□□ 1.27
LIG1-216ENST00000598938 C3orf67Q6ZVT6 689 aa22.99■■□□□ 1.27
LIG1-216ENST00000598938 JARID2Q92833 1246 aaPredicted RBP22.99■■□□□ 1.27
LIG1-216ENST00000598938 TNNQ9UQP3 1299 aa22.99■■□□□ 1.27
LIG1-216ENST00000598938 POTECB2RU33 542 aa22.98■■□□□ 1.27
LIG1-216ENST00000598938 NLRP3Q96P20 1036 aa22.98■■□□□ 1.27
LIG1-216ENST00000598938 CACNA1SQ13698 1873 aa22.98■■□□□ 1.27
LIG1-216ENST00000598938 GRM8O00222 908 aa22.97■■□□□ 1.27
LIG1-216ENST00000598938 HSP90B1P14625 803 aaKnown RBP22.97■■□□□ 1.27
LIG1-216ENST00000598938 INTS3Q68E01 1043 aaKnown RBP22.97■■□□□ 1.27
LIG1-216ENST00000598938 UBE3BQ7Z3V4 1068 aa22.97■■□□□ 1.27
LIG1-216ENST00000598938 NPR1P16066 1061 aa22.96■■□□□ 1.27
LIG1-216ENST00000598938 STYK1Q6J9G0 422 aa22.96■■□□□ 1.27
LIG1-216ENST00000598938 MASTLQ96GX5 879 aa22.96■■□□□ 1.27
LIG1-216ENST00000598938 UTYO14607 1347 aa22.96■■□□□ 1.27
LIG1-216ENST00000598938 SCN4AP35499 1836 aa22.96■■□□□ 1.27
LIG1-216ENST00000598938 PDE8AO60658 829 aa22.95■■□□□ 1.26
LIG1-216ENST00000598938 CREBZFQ9NS37 354 aa22.95■■□□□ 1.26
LIG1-216ENST00000598938 C9orf78Q9NZ63 289 aaPredicted RBP22.95■■□□□ 1.26
LIG1-216ENST00000598938 CAPN15O75808 1086 aa22.94■■□□□ 1.26
LIG1-216ENST00000598938 HOXA10P31260 410 aaPredicted RBP22.94■■□□□ 1.26
LIG1-216ENST00000598938 SF3B3Q15393 1217 aaKnown RBP22.94■■□□□ 1.26
LIG1-216ENST00000598938 SOGA3Q5TF21 947 aa22.94■■□□□ 1.26
LIG1-216ENST00000598938 ZNF622Q969S3 477 aaKnown RBP eCLIP22.94■■□□□ 1.265e-9■□□□□ 11.2
LIG1-216ENST00000598938 CLUAP1Q96AJ1 413 aa22.94■■□□□ 1.26
LIG1-216ENST00000598938 PLA2G12BQ9BX93 195 aa22.94■■□□□ 1.26
LIG1-216ENST00000598938 C21orf2O43822 256 aa22.93■■□□□ 1.26
LIG1-216ENST00000598938 DZIP1LQ8IYY4 767 aaKnown RBP22.93■■□□□ 1.26
LIG1-216ENST00000598938 USP44Q9H0E7 712 aa22.93■■□□□ 1.26
LIG1-216ENST00000598938 TAOK3Q9H2K8 898 aa22.93■■□□□ 1.26
LIG1-216ENST00000598938 SLX4Q8IY92 1834 aa22.93■■□□□ 1.26
LIG1-216ENST00000598938 CHADLQ6NUI6 762 aa22.92■■□□□ 1.26
LIG1-216ENST00000598938 RPGRQ92834 1020 aaKnown RBP22.92■■□□□ 1.26
LIG1-216ENST00000598938 CNKSR1Q969H4 720 aa22.92■■□□□ 1.26
LIG1-216ENST00000598938 NBPF7P0C2Y1 421 aaPredicted RBP22.91■■□□□ 1.26
LIG1-216ENST00000598938 CTSWP56202 376 aa22.91■■□□□ 1.26
LIG1-216ENST00000598938 FTSJ3Q8IY81 847 aaKnown RBP22.91■■□□□ 1.26
LIG1-216ENST00000598938 TMEM57Q8N5G2 664 aa22.91■■□□□ 1.26
LIG1-216ENST00000598938 CRAMP1Q96RY5 1269 aa22.91■■□□□ 1.26
LIG1-216ENST00000598938 PLIN1O60240 522 aa22.9■■□□□ 1.26
LIG1-216ENST00000598938 RLBP1P12271 317 aa22.9■■□□□ 1.26
LIG1-216ENST00000598938 RBM17Q96I25 401 aaKnown RBP22.9■■□□□ 1.26
LIG1-216ENST00000598938 MS4A1P11836 297 aa22.89■■□□□ 1.25
LIG1-216ENST00000598938 ALDH1B1P30837 517 aa22.89■■□□□ 1.25
LIG1-216ENST00000598938 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.89■■□□□ 1.25
LIG1-216ENST00000598938 MYH3P11055 1940 aa22.88■■□□□ 1.25
LIG1-216ENST00000598938 IQCA1LA6NCM1 817 aa22.88■■□□□ 1.25
LIG1-216ENST00000598938 FOXO4P98177 505 aa22.88■■□□□ 1.25
LIG1-216ENST00000598938 CCDC152Q4G0S7 254 aa22.88■■□□□ 1.25
LIG1-216ENST00000598938 PRPF40BQ6NWY9 871 aaKnown RBP22.88■■□□□ 1.25
LIG1-216ENST00000598938 TTLL11Q8NHH1 800 aa22.88■■□□□ 1.25
LIG1-216ENST00000598938 SUCLG2Q96I99 432 aa22.88■■□□□ 1.25
LIG1-216ENST00000598938 CSF1RP07333 972 aa22.87■■□□□ 1.25
LIG1-216ENST00000598938 EPHA10Q5JZY3 1008 aa22.87■■□□□ 1.25
LIG1-216ENST00000598938 DDX46Q7L014 1031 aaKnown RBP22.87■■□□□ 1.25
LIG1-216ENST00000598938 PANK1Q8TE04 598 aa22.87■■□□□ 1.25
LIG1-216ENST00000598938 KAZALD1Q96I82 304 aa22.87■■□□□ 1.25
LIG1-216ENST00000598938 RTL9Q8NET4 1388 aa22.87■■□□□ 1.25
LIG1-216ENST00000598938 L3MBTL3Q96JM7 780 aaPredicted RBP22.86■■□□□ 1.25
LIG1-216ENST00000598938 MEIS3Q99687 375 aa22.86■■□□□ 1.25
LIG1-216ENST00000598938 GRAPQ13588 217 aa22.85■■□□□ 1.25
LIG1-216ENST00000598938 GRAPLQ8TC17 118 aaPredicted RBP22.85■■□□□ 1.25
LIG1-216ENST00000598938 ZNF219Q9P2Y4 722 aaPredicted RBP22.85■■□□□ 1.25
LIG1-216ENST00000598938 CNTNAP1P78357 1384 aa22.85■■□□□ 1.25
LIG1-216ENST00000598938 COL4A1P02462 1669 aa22.84■■□□□ 1.25
LIG1-216ENST00000598938 DDNO94850 711 aaPredicted RBP22.84■■□□□ 1.25
LIG1-216ENST00000598938 UBTFL1P0CB47 393 aaPredicted RBP22.84■■□□□ 1.25
LIG1-216ENST00000598938 RRP1P56182 461 aaKnown RBP22.84■■□□□ 1.25
LIG1-216ENST00000598938 PDE3AQ14432 1141 aa22.84■■□□□ 1.25
LIG1-216ENST00000598938 LDHDQ86WU2 507 aa22.84■■□□□ 1.25
LIG1-216ENST00000598938 C7orf43Q8WVR3 580 aa22.84■■□□□ 1.25
LIG1-216ENST00000598938 CCDC85AQ96PX6 553 aaPredicted RBP22.84■■□□□ 1.25
LIG1-216ENST00000598938 GREM2Q9H772 168 aa22.84■■□□□ 1.25
LIG1-216ENST00000598938 PASKQ96RG2 1323 aa22.83■■□□□ 1.25
LIG1-216ENST00000598938 GNAI3P08754 354 aa22.83■■□□□ 1.25
LIG1-216ENST00000598938 ITPRIPQ8IWB1 547 aa22.83■■□□□ 1.25
LIG1-216ENST00000598938 SEC31BQ9NQW1 1179 aa22.83■■□□□ 1.25
LIG1-216ENST00000598938 ADAMTSL1Q8N6G6 1762 aa22.83■■□□□ 1.24
LIG1-216ENST00000598938 PPEF1O14829 653 aaPredicted RBP22.82■■□□□ 1.24
LIG1-216ENST00000598938 BBOX1O75936 387 aa22.82■■□□□ 1.24
LIG1-216ENST00000598938 RABL6Q3YEC7 729 aaPredicted RBP22.82■■□□□ 1.24
LIG1-216ENST00000598938 C20orf194Q5TEA3 1177 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms