RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 NUTM1Q86Y26 1132 aa13.67□□□□□ -0.22
VPS4B-207ENST00000591519 RIC1Q4ADV7 1423 aa13.66□□□□□ -0.22
VPS4B-207ENST00000591519 IQCA1LA6NCM1 817 aa13.66□□□□□ -0.22
VPS4B-207ENST00000591519 LMOD3Q0VAK6 560 aa13.66□□□□□ -0.22
VPS4B-207ENST00000591519 GRIPAP1Q4V328 841 aa13.66□□□□□ -0.22
VPS4B-207ENST00000591519 SLC10A5Q5PT55 438 aa13.66□□□□□ -0.22
VPS4B-207ENST00000591519 C3orf67Q6ZVT6 689 aa13.66□□□□□ -0.22
VPS4B-207ENST00000591519 PSMD1Q99460 953 aa13.66□□□□□ -0.22
VPS4B-207ENST00000591519 ZBTB3Q9H5J0 574 aa13.66□□□□□ -0.22
VPS4B-207ENST00000591519 UBN2Q6ZU65 1347 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 SNED1Q8TER0 1413 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 FZD9O00144 591 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 CHL1O00533 1208 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 DDX10Q13206 875 aaKnown RBP13.65□□□□□ -0.22
VPS4B-207ENST00000591519 PARP10Q53GL7 1025 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 OLFM4Q6UX06 510 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 SYNE4Q8N205 404 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 CRAMP1Q96RY5 1269 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 ZNF277Q9NRM2 450 aaPredicted RBP13.65□□□□□ -0.22
VPS4B-207ENST00000591519 ABCC12Q96J65 1359 aa13.65□□□□□ -0.22
VPS4B-207ENST00000591519 MYBBP1AQ9BQG0 1328 aaKnown RBP13.64□□□□□ -0.23
VPS4B-207ENST00000591519 NTSR2O95665 410 aa13.64□□□□□ -0.23
VPS4B-207ENST00000591519 GPTP24298 496 aa13.64□□□□□ -0.23
VPS4B-207ENST00000591519 IARSP41252 1262 aaKnown RBP13.64□□□□□ -0.23
VPS4B-207ENST00000591519 PPP1R42Q7Z4L9 355 aa13.64□□□□□ -0.23
VPS4B-207ENST00000591519 TAF1DQ9H5J8 278 aaPredicted RBP13.64□□□□□ -0.23
VPS4B-207ENST00000591519 SCN4AP35499 1836 aa13.64□□□□□ -0.23
VPS4B-207ENST00000591519 EIF2S2P20042 333 aaKnown RBP13.63□□□□□ -0.23
VPS4B-207ENST00000591519 RUNDC1Q96C34 613 aa13.63□□□□□ -0.23
VPS4B-207ENST00000591519 PROSER3Q2NL68 480 aa13.62□□□□□ -0.23
VPS4B-207ENST00000591519 LDHDQ86WU2 507 aa13.62□□□□□ -0.23
VPS4B-207ENST00000591519 RPGRQ92834 1020 aaKnown RBP13.62□□□□□ -0.23
VPS4B-207ENST00000591519 RBM17Q96I25 401 aaKnown RBP13.62□□□□□ -0.23
VPS4B-207ENST00000591519 NLRP3Q96P20 1036 aa13.62□□□□□ -0.23
VPS4B-207ENST00000591519 RNF123Q5XPI4 1314 aa13.62□□□□□ -0.23
VPS4B-207ENST00000591519 ZNF541Q9H0D2 1346 aa13.62□□□□□ -0.23
VPS4B-207ENST00000591519 COPS6Q7L5N1 327 aa13.61□□□□□ -0.23
VPS4B-207ENST00000591519 GPC2Q8N158 579 aa13.61□□□□□ -0.23
VPS4B-207ENST00000591519 UTP14AQ9BVJ6 771 aaKnown RBP13.61□□□□□ -0.23
VPS4B-207ENST00000591519 DDX21Q9NR30 783 aaKnown RBP eCLIP13.61□□□□□ -0.23
VPS4B-207ENST00000591519 PASKQ96RG2 1323 aa13.61□□□□□ -0.23
VPS4B-207ENST00000591519 ITGBL1O95965 494 aaPredicted RBP13.6□□□□□ -0.23
VPS4B-207ENST00000591519 HSP90AB3PQ58FF7 597 aa13.6□□□□□ -0.23
VPS4B-207ENST00000591519 JDP2Q8WYK2 163 aa13.6□□□□□ -0.23
VPS4B-207ENST00000591519 VPS33BQ9H267 617 aa13.6□□□□□ -0.23
VPS4B-207ENST00000591519 HACL1Q9UJ83 578 aa13.6□□□□□ -0.23
VPS4B-207ENST00000591519 ADAMTS8Q9UP79 889 aa13.6□□□□□ -0.23
VPS4B-207ENST00000591519 ANXA1P04083 346 aa13.59□□□□□ -0.23
VPS4B-207ENST00000591519 HOXB7P09629 217 aa13.59□□□□□ -0.23
VPS4B-207ENST00000591519 TCIRG1Q13488 830 aa13.59□□□□□ -0.23
VPS4B-207ENST00000591519 NEUROD2Q15784 382 aa13.59□□□□□ -0.23
VPS4B-207ENST00000591519 PNMA8AQ86V59 439 aaPredicted RBP13.59□□□□□ -0.23
VPS4B-207ENST00000591519 NLRP10Q86W26 655 aa13.59□□□□□ -0.23
VPS4B-207ENST00000591519 CCDC146Q8IYE0 955 aa13.59□□□□□ -0.23
VPS4B-207ENST00000591519 XAGE3Q8WTP9 111 aa13.59□□□□□ -0.23
VPS4B-207ENST00000591519 MARVELD3Q96A59 401 aa13.59□□□□□ -0.23
VPS4B-207ENST00000591519 BBOX1O75936 387 aa13.58□□□□□ -0.24
VPS4B-207ENST00000591519 EPHX2P34913 555 aa13.58□□□□□ -0.24
VPS4B-207ENST00000591519 WDR43Q15061 677 aaKnown RBP eCLIP13.58□□□□□ -0.24
VPS4B-207ENST00000591519 ATP6V0A2Q9Y487 856 aa13.58□□□□□ -0.24
VPS4B-207ENST00000591519 PCNTO95613 3336 aa13.58□□□□□ -0.24
VPS4B-207ENST00000591519 PPEF1O14829 653 aaPredicted RBP13.57□□□□□ -0.24
VPS4B-207ENST00000591519 SNPHO15079 494 aa13.57□□□□□ -0.24
VPS4B-207ENST00000591519 EIF6P56537 245 aaKnown RBP13.57□□□□□ -0.24
VPS4B-207ENST00000591519 AIMP1Q12904 312 aaKnown RBP13.57□□□□□ -0.24
VPS4B-207ENST00000591519 KRT24Q2M2I5 525 aa13.57□□□□□ -0.24
VPS4B-207ENST00000591519 COL13A1Q5TAT6 717 aaPredicted RBP13.57□□□□□ -0.24
VPS4B-207ENST00000591519 CFAP44Q96MT7 982 aa13.57□□□□□ -0.24
VPS4B-207ENST00000591519 RTFDC1Q9BY42 306 aaPredicted RBP13.57□□□□□ -0.24
VPS4B-207ENST00000591519 ADAMTSL1Q8N6G6 1762 aa13.56□□□□□ -0.24
VPS4B-207ENST00000591519 SP8Q8IXZ3 490 aa13.56□□□□□ -0.24
VPS4B-207ENST00000591519 LARGE2Q8N3Y3 721 aa13.56□□□□□ -0.24
VPS4B-207ENST00000591519 PLBD2Q8NHP8 589 aa13.56□□□□□ -0.24
VPS4B-207ENST00000591519 NECTIN2Q92692 538 aa13.56□□□□□ -0.24
VPS4B-207ENST00000591519 PRKRIP1Q9H875 184 aaPredicted RBP13.56□□□□□ -0.24
VPS4B-207ENST00000591519 DBF4Q9UBU7 674 aaPredicted RBP13.56□□□□□ -0.24
VPS4B-207ENST00000591519 COL4A5P29400 1685 aa13.56□□□□□ -0.24
VPS4B-207ENST00000591519 ZNF316A6NFI3 1004 aaPredicted RBP13.55□□□□□ -0.24
VPS4B-207ENST00000591519 ZNF853P0CG23 659 aa13.55□□□□□ -0.24
VPS4B-207ENST00000591519 HSPA1AP0DMV8 641 aaKnown RBP13.55□□□□□ -0.24
VPS4B-207ENST00000591519 HSPA1BP0DMV9 641 aaKnown RBP13.55□□□□□ -0.24
VPS4B-207ENST00000591519 EAPPQ56P03 285 aaPredicted RBP13.55□□□□□ -0.24
VPS4B-207ENST00000591519 ANKRD13DQ6ZTN6 518 aa13.55□□□□□ -0.24
VPS4B-207ENST00000591519 CNTROBQ8N137 903 aa13.55□□□□□ -0.24
VPS4B-207ENST00000591519 SUPT20HQ8NEM7 779 aa13.55□□□□□ -0.24
VPS4B-207ENST00000591519 TMX4Q9H1E5 349 aaPredicted RBP13.55□□□□□ -0.24
VPS4B-207ENST00000591519 CHPF2Q9P2E5 772 aa13.55□□□□□ -0.24
VPS4B-207ENST00000591519 TRMT112Q9UI30 125 aaKnown RBP13.55□□□□□ -0.24
VPS4B-207ENST00000591519 LAS1LQ9Y4W2 734 aaKnown RBP13.55□□□□□ -0.24
VPS4B-207ENST00000591519 ABCC4O15439 1325 aa13.55□□□□□ -0.24
VPS4B-207ENST00000591519 SH3TC1Q8TE82 1336 aa13.55□□□□□ -0.24
VPS4B-207ENST00000591519 ANKRD36CQ5JPF3 1778 aa13.54□□□□□ -0.24
VPS4B-207ENST00000591519 TMEM88BA6NKF7 163 aa13.54□□□□□ -0.24
VPS4B-207ENST00000591519 TCERG1O14776 1098 aaKnown RBP13.54□□□□□ -0.24
VPS4B-207ENST00000591519 HCLS1P14317 486 aaPredicted RBP13.54□□□□□ -0.24
VPS4B-207ENST00000591519 TRIM28Q13263 835 aaKnown RBP13.54□□□□□ -0.24
VPS4B-207ENST00000591519 HDGFL1Q5TGJ6 251 aa13.54□□□□□ -0.24
VPS4B-207ENST00000591519 SLC51AQ86UW1 340 aa13.54□□□□□ -0.24
VPS4B-207ENST00000591519 ISCA1Q9BUE6 129 aa13.54□□□□□ -0.24
VPS4B-207ENST00000591519 TMEM121BQ9BXQ6 578 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms