RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 CNBD1Q8NA66 436 aa13.09□□□□□ -0.31
VPS4B-204ENST00000589604 FAM89AQ96GI7 184 aa13.09□□□□□ -0.31
VPS4B-204ENST00000589604 PPP1R1BQ9UD71 204 aaPredicted RBP13.09□□□□□ -0.31
VPS4B-204ENST00000589604 UTRNP46939 3433 aa13.09□□□□□ -0.31
VPS4B-204ENST00000589604 GCKRQ14397 625 aa13.08□□□□□ -0.31
VPS4B-204ENST00000589604 KLHL34Q8N239 644 aa13.08□□□□□ -0.31
VPS4B-204ENST00000589604 CCDC191Q8NCU4 936 aa13.08□□□□□ -0.31
VPS4B-204ENST00000589604 UTP14AQ9BVJ6 771 aaKnown RBP13.08□□□□□ -0.31
VPS4B-204ENST00000589604 LAMB2P55268 1798 aa13.08□□□□□ -0.31
VPS4B-204ENST00000589604 UTYO14607 1347 aa13.08□□□□□ -0.32
VPS4B-204ENST00000589604 NBPF7P0C2Y1 421 aaPredicted RBP13.08□□□□□ -0.32
VPS4B-204ENST00000589604 TPTE2Q6XPS3 522 aa13.08□□□□□ -0.32
VPS4B-204ENST00000589604 RPAP2Q8IXW5 612 aaPredicted RBP13.08□□□□□ -0.32
VPS4B-204ENST00000589604 SYT17Q9BSW7 474 aa13.08□□□□□ -0.32
VPS4B-204ENST00000589604 CWC25Q9NXE8 425 aaPredicted RBP13.08□□□□□ -0.32
VPS4B-204ENST00000589604 TRMT112Q9UI30 125 aaKnown RBP13.08□□□□□ -0.32
VPS4B-204ENST00000589604 COL4A1P02462 1669 aa13.07□□□□□ -0.32
VPS4B-204ENST00000589604 GNAI2P04899 355 aa13.07□□□□□ -0.32
VPS4B-204ENST00000589604 HCLS1P14317 486 aaPredicted RBP13.07□□□□□ -0.32
VPS4B-204ENST00000589604 KCNA3P22001 575 aa13.07□□□□□ -0.32
VPS4B-204ENST00000589604 CHRNA5P30532 468 aa13.07□□□□□ -0.32
VPS4B-204ENST00000589604 CASP7P55210 303 aa13.07□□□□□ -0.32
VPS4B-204ENST00000589604 NEXNQ0ZGT2 675 aa13.07□□□□□ -0.32
VPS4B-204ENST00000589604 PPP1R42Q7Z4L9 355 aa13.07□□□□□ -0.32
VPS4B-204ENST00000589604 A0A0G2JLW4 131 aa13.06□□□□□ -0.32
VPS4B-204ENST00000589604 H7C1W4 665 aa13.06□□□□□ -0.32
VPS4B-204ENST00000589604 NYXQ9GZU5 481 aa13.06□□□□□ -0.32
VPS4B-204ENST00000589604 PDZRN3Q9UPQ7 1066 aa13.06□□□□□ -0.32
VPS4B-204ENST00000589604 CD2APQ9Y5K6 639 aa13.06□□□□□ -0.32
VPS4B-204ENST00000589604 LRRFIP2Q9Y608 721 aaKnown RBP13.06□□□□□ -0.32
VPS4B-204ENST00000589604 PCCAP05165 728 aaPredicted RBP13.05□□□□□ -0.32
VPS4B-204ENST00000589604 UBTFL1P0CB47 393 aaPredicted RBP13.05□□□□□ -0.32
VPS4B-204ENST00000589604 DPEP1P16444 411 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 SLC10A5Q5PT55 438 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 ZBTB38Q8NAP3 1195 aaPredicted RBP13.05□□□□□ -0.32
VPS4B-204ENST00000589604 KAZALD1Q96I82 304 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 BRIP1Q9BX63 1249 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 SH3TC1Q8TE82 1336 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 KLRG2A4D1S0 409 aaPredicted RBP13.05□□□□□ -0.32
VPS4B-204ENST00000589604 ATP8B2P98198 1209 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 UBE3BQ7Z3V4 1068 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 SLC51AQ86UW1 340 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 DCTPP1Q9H773 170 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 DLEC1Q9Y238 1755 aa13.05□□□□□ -0.32
VPS4B-204ENST00000589604 BRCA1P38398 1863 aaKnown RBP13.04□□□□□ -0.32
VPS4B-204ENST00000589604 RIC1Q4ADV7 1423 aa13.04□□□□□ -0.32
VPS4B-204ENST00000589604 PNMA6EA0A0J9YXQ4 647 aa13.04□□□□□ -0.32
VPS4B-204ENST00000589604 GRM8O00222 908 aa13.04□□□□□ -0.32
VPS4B-204ENST00000589604 IRS4O14654 1257 aaPredicted RBP13.04□□□□□ -0.32
VPS4B-204ENST00000589604 GTF2E1P29083 439 aaPredicted RBP13.04□□□□□ -0.32
VPS4B-204ENST00000589604 ST5P78524 1137 aa13.04□□□□□ -0.32
VPS4B-204ENST00000589604 WWC3Q9ULE0 1092 aa13.04□□□□□ -0.32
VPS4B-204ENST00000589604 TAF1P21675 1872 aa13.03□□□□□ -0.32
VPS4B-204ENST00000589604 NPHP1O15259 732 aa13.03□□□□□ -0.32
VPS4B-204ENST00000589604 EPHA10Q5JZY3 1008 aa13.03□□□□□ -0.32
VPS4B-204ENST00000589604 NUCB1Q02818 461 aa13.02□□□□□ -0.32
VPS4B-204ENST00000589604 POLA2Q14181 598 aa13.02□□□□□ -0.32
VPS4B-204ENST00000589604 CRY2Q49AN0 593 aa13.02□□□□□ -0.32
VPS4B-204ENST00000589604 C2CD5Q86YS7 1000 aa13.02□□□□□ -0.32
VPS4B-204ENST00000589604 GCC1Q96CN9 775 aa13.02□□□□□ -0.32
VPS4B-204ENST00000589604 SUCLG2Q96I99 432 aa13.02□□□□□ -0.32
VPS4B-204ENST00000589604 C9orf78Q9NZ63 289 aaPredicted RBP13.02□□□□□ -0.32
VPS4B-204ENST00000589604 CDHR2Q9BYE9 1310 aa13.02□□□□□ -0.32
VPS4B-204ENST00000589604 SRGNP10124 158 aa13.02□□□□□ -0.33
VPS4B-204ENST00000589604 PDE4AP27815 886 aa13.02□□□□□ -0.33
VPS4B-204ENST00000589604 TGFB2P61812 414 aa13.02□□□□□ -0.33
VPS4B-204ENST00000589604 MTX1Q13505 466 aa13.02□□□□□ -0.33
VPS4B-204ENST00000589604 PELP1Q8IZL8 1130 aaKnown RBP13.02□□□□□ -0.33
VPS4B-204ENST00000589604 SSH3Q8TE77 659 aa13.02□□□□□ -0.33
VPS4B-204ENST00000589604 PDE6BP35913 854 aa13.01□□□□□ -0.33
VPS4B-204ENST00000589604 FOXO4P98177 505 aa13.01□□□□□ -0.33
VPS4B-204ENST00000589604 CACNA1SQ13698 1873 aa13.01□□□□□ -0.33
VPS4B-204ENST00000589604 SLX4Q8IY92 1834 aa13□□□□□ -0.33
VPS4B-204ENST00000589604 CCDC85AQ96PX6 553 aaPredicted RBP13□□□□□ -0.33
VPS4B-204ENST00000589604 MYH3P11055 1940 aa13□□□□□ -0.33
VPS4B-204ENST00000589604 H0YIN7 160 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 PDE8AO60658 829 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 NLRP3Q96P20 1036 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 PLA2G12BQ9BX93 195 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 SEC31BQ9NQW1 1179 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 HMMRO75330 724 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 ECM2O94769 699 aaPredicted RBP12.99□□□□□ -0.33
VPS4B-204ENST00000589604 YBX3P16989 372 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS4B-204ENST00000589604 RGS3P49796 1198 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 CTSWP56202 376 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 SF3B3Q15393 1217 aaKnown RBP12.99□□□□□ -0.33
VPS4B-204ENST00000589604 CHD1LQ86WJ1 897 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 TTLL11Q8NHH1 800 aa12.99□□□□□ -0.33
VPS4B-204ENST00000589604 BICC1Q9H694 974 aaKnown RBP12.99□□□□□ -0.33
VPS4B-204ENST00000589604 NPR1P16066 1061 aa12.98□□□□□ -0.33
VPS4B-204ENST00000589604 HOXA10P31260 410 aaPredicted RBP12.98□□□□□ -0.33
VPS4B-204ENST00000589604 ANKRD45Q5TZF3 282 aa12.98□□□□□ -0.33
VPS4B-204ENST00000589604 OLFM4Q6UX06 510 aa12.98□□□□□ -0.33
VPS4B-204ENST00000589604 ZNF622Q969S3 477 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS4B-204ENST00000589604 MASTLQ96GX5 879 aa12.98□□□□□ -0.33
VPS4B-204ENST00000589604 GREM2Q9H772 168 aa12.98□□□□□ -0.33
VPS4B-204ENST00000589604 CSF1RP07333 972 aa12.97□□□□□ -0.33
VPS4B-204ENST00000589604 RABL6Q3YEC7 729 aaPredicted RBP12.97□□□□□ -0.33
VPS4B-204ENST00000589604 STYK1Q6J9G0 422 aa12.97□□□□□ -0.33
VPS4B-204ENST00000589604 LNPKQ9C0E8 428 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms