RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 MSL1Q68DK7 614 aa10.33□□□□□ -0.76
SMAD4-204ENST00000586253 CLEC4GQ6UXB4 293 aa10.33□□□□□ -0.76
SMAD4-204ENST00000586253 DZIP3Q86Y13 1208 aaKnown RBP10.33□□□□□ -0.76
SMAD4-204ENST00000586253 DDX27Q96GQ7 796 aaKnown RBP10.33□□□□□ -0.76
SMAD4-204ENST00000586253 DBF4Q9UBU7 674 aaPredicted RBP10.33□□□□□ -0.76
SMAD4-204ENST00000586253 SRP68Q9UHB9 627 aaKnown RBP10.33□□□□□ -0.76
SMAD4-204ENST00000586253 CACNA1FO60840 1977 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 ERVV-1B6SEH8 477 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 ELL2O00472 640 aaPredicted RBP10.32□□□□□ -0.76
SMAD4-204ENST00000586253 CAMTA2O94983 1202 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 MYL6BP14649 208 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 KIF6Q6ZMV9 814 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 TRMT2AQ8IZ69 625 aaKnown RBP10.32□□□□□ -0.76
SMAD4-204ENST00000586253 TSPYL6Q8N831 410 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 ZDHHC16Q969W1 377 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 ARXQ96QS3 562 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 HYPKQ9NX55 129 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 CHPF2Q9P2E5 772 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 TBC1D2BQ9UPU7 963 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 ZNF652Q9Y2D9 606 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 ZBED9Q6R2W3 1325 aa10.32□□□□□ -0.76
SMAD4-204ENST00000586253 VAMP4O75379 141 aa10.31□□□□□ -0.76
SMAD4-204ENST00000586253 MMP10P09238 476 aa10.31□□□□□ -0.76
SMAD4-204ENST00000586253 EXOSC9Q06265 439 aaKnown RBP10.31□□□□□ -0.76
SMAD4-204ENST00000586253 PROSER3Q2NL68 480 aa10.31□□□□□ -0.76
SMAD4-204ENST00000586253 THSD4Q6ZMP0 1018 aa10.31□□□□□ -0.76
SMAD4-204ENST00000586253 NECTIN2Q92692 538 aa10.31□□□□□ -0.76
SMAD4-204ENST00000586253 MAP3K15Q6ZN16 1313 aa10.31□□□□□ -0.76
SMAD4-204ENST00000586253 CT47B1P0C2W7 299 aaPredicted RBP10.3□□□□□ -0.76
SMAD4-204ENST00000586253 TM4SF1P30408 202 aa10.3□□□□□ -0.76
SMAD4-204ENST00000586253 NFIXQ14938 502 aa10.3□□□□□ -0.76
SMAD4-204ENST00000586253 ZNF428Q96B54 188 aa10.3□□□□□ -0.76
SMAD4-204ENST00000586253 CDCA7LQ96GN5 454 aa10.3□□□□□ -0.76
SMAD4-204ENST00000586253 STK31Q9BXU1 1019 aa10.3□□□□□ -0.76
SMAD4-204ENST00000586253 PPP1R1BQ9UD71 204 aaPredicted RBP10.3□□□□□ -0.76
SMAD4-204ENST00000586253 PCDHGA10Q9Y5H3 936 aa10.3□□□□□ -0.76
SMAD4-204ENST00000586253 PARP3Q9Y6F1 533 aa10.3□□□□□ -0.76
SMAD4-204ENST00000586253 NRXN2Q9P2S2 1712 aa10.3□□□□□ -0.76
SMAD4-204ENST00000586253 NUP98P52948 1817 aa10.29□□□□□ -0.76
SMAD4-204ENST00000586253 ANXA1P04083 346 aa10.29□□□□□ -0.76
SMAD4-204ENST00000586253 IFFO2Q5TF58 517 aa10.29□□□□□ -0.76
SMAD4-204ENST00000586253 TTLL7Q6ZT98 887 aa10.29□□□□□ -0.76
SMAD4-204ENST00000586253 COPS6Q7L5N1 327 aa10.29□□□□□ -0.76
SMAD4-204ENST00000586253 XAGE3Q8WTP9 111 aa10.29□□□□□ -0.76
SMAD4-204ENST00000586253 ATP10DQ9P241 1426 aa10.29□□□□□ -0.76
SMAD4-204ENST00000586253 KIF13BQ9NQT8 1826 aa10.28□□□□□ -0.76
SMAD4-204ENST00000586253 CARMIL3Q8ND23 1372 aa10.28□□□□□ -0.76
SMAD4-204ENST00000586253 POLRMTO00411 1230 aaKnown RBP10.28□□□□□ -0.76
SMAD4-204ENST00000586253 DDR1Q08345 913 aa10.28□□□□□ -0.76
SMAD4-204ENST00000586253 TBC1D9BQ66K14 1250 aa10.28□□□□□ -0.76
SMAD4-204ENST00000586253 GIGYF2Q6Y7W6 1299 aaKnown RBP10.28□□□□□ -0.76
SMAD4-204ENST00000586253 SETDB2Q96T68 719 aa10.28□□□□□ -0.76
SMAD4-204ENST00000586253 CD2APQ9Y5K6 639 aa10.28□□□□□ -0.76
SMAD4-204ENST00000586253 ANKRD36CQ5JPF3 1778 aa10.27□□□□□ -0.77
SMAD4-204ENST00000586253 C10orf71Q711Q0 1435 aa10.27□□□□□ -0.77
SMAD4-204ENST00000586253 DDX58O95786 925 aaKnown RBP10.27□□□□□ -0.77
SMAD4-204ENST00000586253 PTPN5P54829 565 aa10.27□□□□□ -0.77
SMAD4-204ENST00000586253 HLFQ16534 295 aa10.27□□□□□ -0.77
SMAD4-204ENST00000586253 HSP90AB3PQ58FF7 597 aa10.27□□□□□ -0.77
SMAD4-204ENST00000586253 PLBD2Q8NHP8 589 aa10.27□□□□□ -0.77
SMAD4-204ENST00000586253 ZBTB3Q9H5J0 574 aa10.27□□□□□ -0.77
SMAD4-204ENST00000586253 AFDNP55196 1824 aaKnown RBP10.27□□□□□ -0.77
SMAD4-204ENST00000586253 IBTKQ9P2D0 1353 aaPredicted RBP10.26□□□□□ -0.77
SMAD4-204ENST00000586253 SERPINB2P05120 415 aa10.26□□□□□ -0.77
SMAD4-204ENST00000586253 AIMP1Q12904 312 aaKnown RBP10.26□□□□□ -0.77
SMAD4-204ENST00000586253 SYT17Q9BSW7 474 aa10.26□□□□□ -0.77
SMAD4-204ENST00000586253 FHDC1Q9C0D6 1143 aaPredicted RBP10.26□□□□□ -0.77
SMAD4-204ENST00000586253 NIP7Q9Y221 180 aaKnown RBP eCLIP10.26□□□□□ -0.77
SMAD4-204ENST00000586253 ARFGEF2Q9Y6D5 1785 aa10.26□□□□□ -0.77
SMAD4-204ENST00000586253 COL9A1P20849 921 aa10.25□□□□□ -0.77
SMAD4-204ENST00000586253 MAP3K9P80192 1104 aa10.25□□□□□ -0.77
SMAD4-204ENST00000586253 CAMK2BQ13554 666 aa10.25□□□□□ -0.77
SMAD4-204ENST00000586253 ALDH1L2Q3SY69 923 aa10.25□□□□□ -0.77
SMAD4-204ENST00000586253 PARP10Q53GL7 1025 aa10.25□□□□□ -0.77
SMAD4-204ENST00000586253 BICDL1Q6ZP65 573 aa10.25□□□□□ -0.77
SMAD4-204ENST00000586253 ZNF34Q8IZ26 560 aa10.25□□□□□ -0.77
SMAD4-204ENST00000586253 PHAXQ9H814 394 aaKnown RBP10.25□□□□□ -0.77
SMAD4-204ENST00000586253 TGFB2P61812 414 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 FLIIQ13045 1269 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 TRIM28Q13263 835 aaKnown RBP10.24□□□□□ -0.77
SMAD4-204ENST00000586253 TCIRG1Q13488 830 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 KSR2Q6VAB6 950 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 TPTE2Q6XPS3 522 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 RIC3Q7Z5B4 369 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 NBPF5PQ86XG9 351 aaPredicted RBP10.24□□□□□ -0.77
SMAD4-204ENST00000586253 CNBD1Q8NA66 436 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 NYXQ9GZU5 481 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 RNF123Q5XPI4 1314 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 UBN2Q6ZU65 1347 aa10.24□□□□□ -0.77
SMAD4-204ENST00000586253 PPP1R3GB7ZBB8 358 aa10.23□□□□□ -0.77
SMAD4-204ENST00000586253 TCERG1O14776 1098 aaKnown RBP10.23□□□□□ -0.77
SMAD4-204ENST00000586253 BRPF1P55201 1214 aaPredicted RBP10.23□□□□□ -0.77
SMAD4-204ENST00000586253 ST5P78524 1137 aa10.23□□□□□ -0.77
SMAD4-204ENST00000586253 PRR5LQ6MZQ0 368 aa10.23□□□□□ -0.77
SMAD4-204ENST00000586253 G2E3Q7L622 706 aa10.23□□□□□ -0.77
SMAD4-204ENST00000586253 PPP1R42Q7Z4L9 355 aa10.23□□□□□ -0.77
SMAD4-204ENST00000586253 MRPL50Q8N5N7 158 aaKnown RBP10.23□□□□□ -0.77
SMAD4-204ENST00000586253 WNT2BQ93097 391 aa10.23□□□□□ -0.77
SMAD4-204ENST00000586253 ISCA1Q9BUE6 129 aa10.23□□□□□ -0.77
SMAD4-204ENST00000586253 METTL22Q9BUU2 404 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms