RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 BRIP1Q9BX63 1249 aa15.85■□□□□ 0.13
VMP1-202ENST00000585847 COL4A1P02462 1669 aa15.85■□□□□ 0.13
VMP1-202ENST00000585847 TAF1P21675 1872 aa15.84■□□□□ 0.13
VMP1-202ENST00000585847 IRS4O14654 1257 aaPredicted RBP15.84■□□□□ 0.13
VMP1-202ENST00000585847 KCNA3P22001 575 aa15.84■□□□□ 0.13
VMP1-202ENST00000585847 EPHA10Q5JZY3 1008 aa15.84■□□□□ 0.13
VMP1-202ENST00000585847 UBE3BQ7Z3V4 1068 aa15.84■□□□□ 0.13
VMP1-202ENST00000585847 MEIS3Q99687 375 aa15.84■□□□□ 0.13
VMP1-202ENST00000585847 PLA2G12BQ9BX93 195 aa15.84■□□□□ 0.13
VMP1-202ENST00000585847 ST5P78524 1137 aa15.83■□□□□ 0.12
VMP1-202ENST00000585847 SUCLG2Q96I99 432 aa15.83■□□□□ 0.12
VMP1-202ENST00000585847 ZBTB40Q9NUA8 1239 aa15.83■□□□□ 0.12
VMP1-202ENST00000585847 ZBTB7BO15156 539 aaPredicted RBP15.82■□□□□ 0.12
VMP1-202ENST00000585847 GNAI3P08754 354 aa15.82■□□□□ 0.12
VMP1-202ENST00000585847 HSPA6P17066 643 aa15.82■□□□□ 0.12
VMP1-202ENST00000585847 CHRNA5P30532 468 aa15.82■□□□□ 0.12
VMP1-202ENST00000585847 FOXO4P98177 505 aa15.82■□□□□ 0.12
VMP1-202ENST00000585847 CRY2Q49AN0 593 aa15.82■□□□□ 0.12
VMP1-202ENST00000585847 RWDD1Q9H446 243 aaPredicted RBP15.82■□□□□ 0.12
VMP1-202ENST00000585847 GTF2E1P29083 439 aaPredicted RBP15.81■□□□□ 0.12
VMP1-202ENST00000585847 HDAC1Q13547 482 aaPredicted RBP15.81■□□□□ 0.12
VMP1-202ENST00000585847 C9orf78Q9NZ63 289 aaPredicted RBP15.81■□□□□ 0.12
VMP1-202ENST00000585847 CACNA1SQ13698 1873 aa15.8■□□□□ 0.12
VMP1-202ENST00000585847 A0A0G2JLW4 131 aa15.8■□□□□ 0.12
VMP1-202ENST00000585847 PDE8AO60658 829 aa15.8■□□□□ 0.12
VMP1-202ENST00000585847 SRGNP10124 158 aa15.8■□□□□ 0.12
VMP1-202ENST00000585847 DPEP1P16444 411 aa15.8■□□□□ 0.12
VMP1-202ENST00000585847 TGFB2P61812 414 aa15.8■□□□□ 0.12
VMP1-202ENST00000585847 SF3B3Q15393 1217 aaKnown RBP15.8■□□□□ 0.12
VMP1-202ENST00000585847 NPHP1O15259 732 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 CSF1RP07333 972 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 PDE6BP35913 854 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 B4GALNT3Q6L9W6 998 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 C2CD5Q86YS7 1000 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 ANKRD44Q8N8A2 993 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 TTLL11Q8NHH1 800 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 NLRP3Q96P20 1036 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 SLX4Q8IY92 1834 aa15.79■□□□□ 0.12
VMP1-202ENST00000585847 KDM2BQ8NHM5 1336 aa15.78■□□□□ 0.12
VMP1-202ENST00000585847 HOXA10P31260 410 aaPredicted RBP15.78■□□□□ 0.12
VMP1-202ENST00000585847 CTSWP56202 376 aa15.78■□□□□ 0.12
VMP1-202ENST00000585847 RABL6Q3YEC7 729 aaPredicted RBP15.78■□□□□ 0.12
VMP1-202ENST00000585847 PIAS4Q8N2W9 510 aaPredicted RBP15.78■□□□□ 0.12
VMP1-202ENST00000585847 BICC1Q9H694 974 aaKnown RBP15.78■□□□□ 0.12
VMP1-202ENST00000585847 SLC51AQ86UW1 340 aa15.77■□□□□ 0.12
VMP1-202ENST00000585847 RPAP2Q8IXW5 612 aaPredicted RBP15.77■□□□□ 0.12
VMP1-202ENST00000585847 HMMRO75330 724 aa15.76■□□□□ 0.11
VMP1-202ENST00000585847 UBTFL1P0CB47 393 aaPredicted RBP15.76■□□□□ 0.11
VMP1-202ENST00000585847 MASTLQ96GX5 879 aa15.76■□□□□ 0.11
VMP1-202ENST00000585847 CCDC85AQ96PX6 553 aaPredicted RBP15.76■□□□□ 0.11
VMP1-202ENST00000585847 GREM2Q9H772 168 aa15.76■□□□□ 0.11
VMP1-202ENST00000585847 SEC31BQ9NQW1 1179 aa15.76■□□□□ 0.11
VMP1-202ENST00000585847 LRRFIP2Q9Y608 721 aaKnown RBP15.76■□□□□ 0.11
VMP1-202ENST00000585847 RTL9Q8NET4 1388 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 H0YIN7 160 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 NPR1P16066 1061 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 STYK1Q6J9G0 422 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 LMBR1LQ6UX01 489 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 C1orf115Q9H7X2 142 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 PDZRN3Q9UPQ7 1066 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 BCS1LQ9Y276 419 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 SPEF2Q9C093 1822 aa15.75■□□□□ 0.11
VMP1-202ENST00000585847 ARFGEF1Q9Y6D6 1849 aa15.74■□□□□ 0.11
VMP1-202ENST00000585847 GNAI2P04899 355 aa15.74■□□□□ 0.11
VMP1-202ENST00000585847 FAM161AQ3B820 660 aa15.74■□□□□ 0.11
VMP1-202ENST00000585847 CELF1Q92879 486 aaKnown RBP15.74■□□□□ 0.11
VMP1-202ENST00000585847 GCC1Q96CN9 775 aa15.74■□□□□ 0.11
VMP1-202ENST00000585847 CRAMP1Q96RY5 1269 aa15.74■□□□□ 0.11
VMP1-202ENST00000585847 KIF3CO14782 793 aa15.73■□□□□ 0.11
VMP1-202ENST00000585847 RFX5P48382 616 aaPredicted RBP15.73■□□□□ 0.11
VMP1-202ENST00000585847 C7orf43Q8WVR3 580 aa15.73■□□□□ 0.11
VMP1-202ENST00000585847 ZNF622Q969S3 477 aaKnown RBP eCLIP15.73■□□□□ 0.11
VMP1-202ENST00000585847 LRRC37AA6NMS7 1700 aa15.72■□□□□ 0.11
VMP1-202ENST00000585847 SNED1Q8TER0 1413 aa15.72■□□□□ 0.11
VMP1-202ENST00000585847 HSP90B1P14625 803 aaKnown RBP15.72■□□□□ 0.11
VMP1-202ENST00000585847 CCDC152Q4G0S7 254 aa15.72■□□□□ 0.11
VMP1-202ENST00000585847 ARHGAP27Q6ZUM4 889 aa15.72■□□□□ 0.11
VMP1-202ENST00000585847 RPGRQ92834 1020 aaKnown RBP15.72■□□□□ 0.11
VMP1-202ENST00000585847 ITGA6P23229 1130 aa15.71■□□□□ 0.11
VMP1-202ENST00000585847 APLP1P51693 650 aa15.71■□□□□ 0.11
VMP1-202ENST00000585847 MTX1Q13505 466 aa15.71■□□□□ 0.11
VMP1-202ENST00000585847 GRAPQ13588 217 aa15.71■□□□□ 0.11
VMP1-202ENST00000585847 GRAPLQ8TC17 118 aaPredicted RBP15.71■□□□□ 0.11
VMP1-202ENST00000585847 RBM17Q96I25 401 aaKnown RBP15.71■□□□□ 0.11
VMP1-202ENST00000585847 PIM2Q9P1W9 311 aa15.71■□□□□ 0.11
VMP1-202ENST00000585847 A0A1B0GUL6 1792 aa15.71■□□□□ 0.11
VMP1-202ENST00000585847 PNMA6EA0A0J9YXQ4 647 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 TOMM70O94826 608 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 PRPF40BQ6NWY9 871 aaKnown RBP15.7■□□□□ 0.1
VMP1-202ENST00000585847 CEP85Q6P2H3 762 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 OLFM4Q6UX06 510 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 DDX46Q7L014 1031 aaKnown RBP15.7■□□□□ 0.1
VMP1-202ENST00000585847 SIRT2Q8IXJ6 389 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 SMC5Q8IY18 1101 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 TTLL6Q8N841 843 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 CNKSR1Q969H4 720 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 PCDHB15Q9Y5E8 787 aa15.7■□□□□ 0.1
VMP1-202ENST00000585847 ALDH1B1P30837 517 aa15.69■□□□□ 0.1
VMP1-202ENST00000585847 ATP8B2P98198 1209 aa15.69■□□□□ 0.1
VMP1-202ENST00000585847 ZNF594Q96JF6 807 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms