RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 HMMRO75330 724 aa22.84■■□□□ 1.25
RFFL-211ENST00000584541 CSF1RP07333 972 aa22.84■■□□□ 1.25
RFFL-211ENST00000584541 ATP8B2P98198 1209 aa22.84■■□□□ 1.25
RFFL-211ENST00000584541 MTX1Q13505 466 aa22.84■■□□□ 1.25
RFFL-211ENST00000584541 SF3B3Q15393 1217 aaKnown RBP22.84■■□□□ 1.25
RFFL-211ENST00000584541 PDZRN3Q9UPQ7 1066 aa22.84■■□□□ 1.25
RFFL-211ENST00000584541 SRGAP3O43295 1099 aa22.83■■□□□ 1.25
RFFL-211ENST00000584541 RPGRQ92834 1020 aaKnown RBP22.83■■□□□ 1.25
RFFL-211ENST00000584541 CCDC57Q2TAC2 916 aa22.82■■□□□ 1.24
RFFL-211ENST00000584541 CCDC85AQ96PX6 553 aaPredicted RBP22.82■■□□□ 1.24
RFFL-211ENST00000584541 PCDHB15Q9Y5E8 787 aa22.82■■□□□ 1.24
RFFL-211ENST00000584541 RTL9Q8NET4 1388 aa22.81■■□□□ 1.24
RFFL-211ENST00000584541 IFIT5Q13325 482 aaKnown RBP22.81■■□□□ 1.24
RFFL-211ENST00000584541 FAM161AQ3B820 660 aa22.81■■□□□ 1.24
RFFL-211ENST00000584541 C3orf67Q6ZVT6 689 aa22.81■■□□□ 1.24
RFFL-211ENST00000584541 COL11A2P13942 1736 aaPredicted RBP22.8■■□□□ 1.24
RFFL-211ENST00000584541 ANKRD18BA2A2Z9 1011 aa22.8■■□□□ 1.24
RFFL-211ENST00000584541 KLRG2A4D1S0 409 aaPredicted RBP22.8■■□□□ 1.24
RFFL-211ENST00000584541 CRY2Q49AN0 593 aa22.8■■□□□ 1.24
RFFL-211ENST00000584541 DDX46Q7L014 1031 aaKnown RBP22.8■■□□□ 1.24
RFFL-211ENST00000584541 GREM2Q9H772 168 aa22.8■■□□□ 1.24
RFFL-211ENST00000584541 PNMA6EA0A0J9YXQ4 647 aa22.79■■□□□ 1.24
RFFL-211ENST00000584541 H0YIN7 160 aa22.79■■□□□ 1.24
RFFL-211ENST00000584541 ITGA6P23229 1130 aa22.79■■□□□ 1.24
RFFL-211ENST00000584541 TAF7LQ5H9L4 462 aa22.79■■□□□ 1.24
RFFL-211ENST00000584541 C2CD5Q86YS7 1000 aa22.79■■□□□ 1.24
RFFL-211ENST00000584541 RBM17Q96I25 401 aaKnown RBP22.79■■□□□ 1.24
RFFL-211ENST00000584541 SPEF2Q9C093 1822 aa22.79■■□□□ 1.24
RFFL-211ENST00000584541 DLEC1Q9Y238 1755 aa22.78■■□□□ 1.24
RFFL-211ENST00000584541 KLHL34Q8N239 644 aa22.78■■□□□ 1.24
RFFL-211ENST00000584541 SSH3Q8TE77 659 aa22.78■■□□□ 1.24
RFFL-211ENST00000584541 CDC5LQ99459 802 aaKnown RBP22.78■■□□□ 1.24
RFFL-211ENST00000584541 RWDD1Q9H446 243 aaPredicted RBP22.78■■□□□ 1.24
RFFL-211ENST00000584541 PPP1R1BQ9UD71 204 aaPredicted RBP22.78■■□□□ 1.24
RFFL-211ENST00000584541 TAF1P21675 1872 aa22.77■■□□□ 1.24
RFFL-211ENST00000584541 CACNA1SQ13698 1873 aa22.77■■□□□ 1.24
RFFL-211ENST00000584541 NPR1P16066 1061 aa22.77■■□□□ 1.24
RFFL-211ENST00000584541 POLA2Q14181 598 aa22.77■■□□□ 1.24
RFFL-211ENST00000584541 PPP4R2Q9NY27 417 aa22.77■■□□□ 1.24
RFFL-211ENST00000584541 CD2APQ9Y5K6 639 aa22.77■■□□□ 1.24
RFFL-211ENST00000584541 SRGNP10124 158 aa22.76■■□□□ 1.23
RFFL-211ENST00000584541 TGFB2P61812 414 aa22.76■■□□□ 1.23
RFFL-211ENST00000584541 HDAC1Q13547 482 aaPredicted RBP22.76■■□□□ 1.23
RFFL-211ENST00000584541 SIRT2Q8IXJ6 389 aa22.76■■□□□ 1.23
RFFL-211ENST00000584541 MASTLQ96GX5 879 aa22.76■■□□□ 1.23
RFFL-211ENST00000584541 HOXA10P31260 410 aaPredicted RBP22.75■■□□□ 1.23
RFFL-211ENST00000584541 IGHMBP2P38935 993 aaKnown RBP22.75■■□□□ 1.23
RFFL-211ENST00000584541 CCDC136Q96JN2 1154 aa22.75■■□□□ 1.23
RFFL-211ENST00000584541 SEC31BQ9NQW1 1179 aa22.75■■□□□ 1.23
RFFL-211ENST00000584541 ALDH1B1P30837 517 aa22.74■■□□□ 1.23
RFFL-211ENST00000584541 RFX5P48382 616 aaPredicted RBP22.74■■□□□ 1.23
RFFL-211ENST00000584541 STYK1Q6J9G0 422 aa22.74■■□□□ 1.23
RFFL-211ENST00000584541 ANKRD18AQ8IVF6 992 aa22.74■■□□□ 1.23
RFFL-211ENST00000584541 ZNF622Q969S3 477 aaKnown RBP eCLIP22.74■■□□□ 1.23
RFFL-211ENST00000584541 CRAMP1Q96RY5 1269 aa22.74■■□□□ 1.23
RFFL-211ENST00000584541 GRAPQ13588 217 aa22.73■■□□□ 1.23
RFFL-211ENST00000584541 GRAPLQ8TC17 118 aaPredicted RBP22.73■■□□□ 1.23
RFFL-211ENST00000584541 MPHOSPH8Q99549 860 aa22.73■■□□□ 1.23
RFFL-211ENST00000584541 COPRSQ9NQ92 184 aa22.73■■□□□ 1.23
RFFL-211ENST00000584541 KIAA1551Q9HCM1 1747 aa22.73■■□□□ 1.23
RFFL-211ENST00000584541 LRP5O75197 1615 aa22.72■■□□□ 1.23
RFFL-211ENST00000584541 SURF6O75683 361 aaKnown RBP22.72■■□□□ 1.23
RFFL-211ENST00000584541 CHRNA5P30532 468 aa22.72■■□□□ 1.23
RFFL-211ENST00000584541 RPS8P62241 208 aaKnown RBP22.72■■□□□ 1.23
RFFL-211ENST00000584541 PTPN12Q05209 780 aaKnown RBP22.72■■□□□ 1.23
RFFL-211ENST00000584541 CNKSR1Q969H4 720 aa22.72■■□□□ 1.23
RFFL-211ENST00000584541 ZNF594Q96JF6 807 aaPredicted RBP22.72■■□□□ 1.23
RFFL-211ENST00000584541 FBXO3Q9UK99 471 aa22.72■■□□□ 1.23
RFFL-211ENST00000584541 GTF3C3Q9Y5Q9 886 aa22.72■■□□□ 1.23
RFFL-211ENST00000584541 G3BP1Q13283 466 aaKnown RBP eCLIP22.71■■□□□ 1.23
RFFL-211ENST00000584541 HSP90AB4PQ58FF6 505 aa22.71■■□□□ 1.23
RFFL-211ENST00000584541 LDHAL6AQ6ZMR3 332 aa22.71■■□□□ 1.23
RFFL-211ENST00000584541 KLHDC4Q8TBB5 520 aa22.71■■□□□ 1.23
RFFL-211ENST00000584541 PA2G4Q9UQ80 394 aaKnown RBP22.71■■□□□ 1.23
RFFL-211ENST00000584541 A0A0G2JLW4 131 aa22.7■■□□□ 1.22
RFFL-211ENST00000584541 BBOX1O75936 387 aa22.7■■□□□ 1.22
RFFL-211ENST00000584541 DPEP1P16444 411 aa22.7■■□□□ 1.22
RFFL-211ENST00000584541 OS9Q13438 667 aaPredicted RBP22.7■■□□□ 1.22
RFFL-211ENST00000584541 CELF1Q92879 486 aaKnown RBP22.7■■□□□ 1.22
RFFL-211ENST00000584541 SIL1Q9H173 461 aa22.7■■□□□ 1.22
RFFL-211ENST00000584541 CNNM1Q9NRU3 951 aa22.7■■□□□ 1.22
RFFL-211ENST00000584541 TMC4Q7Z404 712 aa22.69■■□□□ 1.22
RFFL-211ENST00000584541 GCC1Q96CN9 775 aa22.69■■□□□ 1.22
RFFL-211ENST00000584541 NOP58Q9Y2X3 529 aaKnown RBP22.69■■□□□ 1.22
RFFL-211ENST00000584541 BRCA1P38398 1863 aaKnown RBP22.68■■□□□ 1.22
RFFL-211ENST00000584541 EYA2O00167 538 aa22.68■■□□□ 1.22
RFFL-211ENST00000584541 CIAO1O76071 339 aa22.68■■□□□ 1.22
RFFL-211ENST00000584541 IGHDP01880 384 aa22.68■■□□□ 1.22
RFFL-211ENST00000584541 ERC1Q8IUD2 1116 aa22.68■■□□□ 1.22
RFFL-211ENST00000584541 DCTPP1Q9H773 170 aa22.68■■□□□ 1.22
RFFL-211ENST00000584541 BSDC1Q9NW68 430 aaPredicted RBP22.68■■□□□ 1.22
RFFL-211ENST00000584541 EXOC6BQ9Y2D4 811 aa22.68■■□□□ 1.22
RFFL-211ENST00000584541 B4GALNT3Q6L9W6 998 aa22.67■■□□□ 1.22
RFFL-211ENST00000584541 FHDC1Q9C0D6 1143 aaPredicted RBP22.67■■□□□ 1.22
RFFL-211ENST00000584541 TMX4Q9H1E5 349 aaPredicted RBP22.67■■□□□ 1.22
RFFL-211ENST00000584541 PIM2Q9P1W9 311 aa22.67■■□□□ 1.22
RFFL-211ENST00000584541 COL4A1P02462 1669 aa22.67■■□□□ 1.22
RFFL-211ENST00000584541 SLX4Q8IY92 1834 aa22.66■■□□□ 1.22
RFFL-211ENST00000584541 PPEF1O14829 653 aaPredicted RBP22.66■■□□□ 1.22
RFFL-211ENST00000584541 RAB11FIP3O75154 756 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms