RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	IL2RB	P14784	551 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	CREBRF	Q8IUR6	639 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	RHPN1	Q8TCX5	695 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	GOLGA6A	Q9NYA3	693 aa		13.82	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	USP54	Q70EL1	1684 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	COL9A3	Q14050	684 aa	Predicted RBP	13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	BEND3	Q5T5X7	828 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	LRSAM1	Q6UWE0	723 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	PIK3R5	Q8WYR1	880 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	DCAF5	Q96JK2	942 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	OFD1	O75665	1012 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	SCP2	P22307	547 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	RHBDL3	P58872	404 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	BANK1	Q8NDB2	785 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	SSH3	Q8TE77	659 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	ARHGEF1	Q92888	912 aa	Known RBP	13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	DBF4	Q9UBU7	674 aa	Predicted RBP	13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	USP16	Q9Y5T5	823 aa		13.81	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	MAP2K1	Q02750	393 aa	Predicted RBP	13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	CWC27	Q6UX04	472 aa	Known RBP	13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	USP48	Q86UV5	1035 aa		13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	PI4K2B	Q8TCG2	481 aa		13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	DNAAF4	Q8WXU2	420 aa		13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	BABAM1	Q9NWV8	329 aa		13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	CNPY2	Q9Y2B0	182 aa		13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	ADCY9	O60503	1353 aa		13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	MAP3K2	Q9Y2U5	619 aa		13.8	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	UQCRHL	A0A096LP55	91 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	UBAP1L	F5GYI3	381 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	FIBP	O43427	364 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	UQCRH	P07919	91 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	RASEF	Q8IZ41	740 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	KLHDC4	Q8TBB5	520 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	USP25	Q9UHP3	1055 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	CPD	O75976	1380 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	CAMTA1	Q9Y6Y1	1673 aa		13.79	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.78	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	ROBO1	Q9Y6N7	1651 aa		13.78	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	GORAB	Q5T7V8	394 aa		13.78	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	RIC3	Q7Z5B4	369 aa		13.78	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.78	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	STAP2	Q9UGK3	403 aa		13.78	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	NOL7	Q9UMY1	257 aa	Known RBP	13.78	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	KIF4A	O95239	1232 aa		13.77	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	POLA2	Q14181	598 aa		13.77	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	TSPAN18	Q96SJ8	248 aa		13.77	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	PNMA2	Q9UL42	364 aa		13.77	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	TCHH	Q07283	1943 aa		13.77	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	LTBP4	Q8N2S1	1624 aa		13.77	□□□□□ -0.2
CDK5RAP3-231	ENST00000584063	ZNF662	Q6ZS27	426 aa		13.77	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TCEANC2	Q96MN5	208 aa		13.77	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	SIL1	Q9H173	461 aa		13.77	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TTC12	Q9H892	705 aa	Predicted RBP	13.77	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	KDM6A	O15550	1401 aa	Predicted RBP	13.77	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	HCLS1	P14317	486 aa	Predicted RBP	13.77	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.77	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TSPY26P	Q9H489	355 aa		13.77	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.77	□□□□□ -0.21	8e-10	■□□□□ 11
CDK5RAP3-231	ENST00000584063	LARGE1	O95461	756 aa		13.76	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	COPS6	Q7L5N1	327 aa		13.76	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	ZKSCAN5	Q9Y2L8	839 aa		13.76	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TPM2	P07951	284 aa		13.76	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PDLIM2	Q96JY6	352 aa		13.76	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TLR7	Q9NYK1	1049 aa	Known RBP	13.76	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PCDH11X	Q9BZA7	1347 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PCDH11Y	Q9BZA8	1340 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PTH1R	Q03431	593 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	FAM173B	Q6P4H8	233 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	XAGE3	Q8WTP9	111 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	ZBTB9	Q96C00	473 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	FMNL2	Q96PY5	1086 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TOM1	O60784	492 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PPFIA4	O75335	1185 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	SNRPA1	P09661	255 aa	Known RBP	13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	DDX46	Q7L014	1031 aa	Known RBP	13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	MICAL1	Q8TDZ2	1067 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	BORCS6	Q96GS4	357 aa		13.75	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	CHGB	P05060	677 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	AK2	P54819	239 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	GIMAP6	Q6P9H5	292 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	CCDC83	Q8IWF9	413 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	FBXW7	Q969H0	707 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	SNX14	Q9Y5W7	946 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	NDUFB9	Q9Y6M9	179 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TUBGCP6	Q96RT7	1819 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	IRF5	Q13568	498 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	FERMT3	Q86UX7	667 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	NECAB1	Q8N987	351 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	KAZALD1	Q96I82	304 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	SUCLG2	Q96I99	432 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	GEMIN8	Q9NWZ8	242 aa	Known RBP	13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	COL5A2	P05997	1499 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	COL18A1	P39060	1754 aa		13.74	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	UNCX	A6NJT0	531 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	ATP5J2-PTCD1	G3V325	749 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	HOXB7	P09629	217 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms