RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	NEUROD1	Q13562	356 aa		7.45	□□□□□ -1.22
SS18-223	ENST00000583595	GPAT2	Q6NUI2	795 aa		7.45	□□□□□ -1.22
SS18-223	ENST00000583595	RAB44	Q7Z6P3	723 aa	Predicted RBP	7.45	□□□□□ -1.22
SS18-223	ENST00000583595	GLYCTK	Q8IVS8	523 aa		7.45	□□□□□ -1.22
SS18-223	ENST00000583595	GTF3C2	Q8WUA4	911 aa	Predicted RBP	7.45	□□□□□ -1.22
SS18-223	ENST00000583595	VTI1A	Q96AJ9	217 aa		7.45	□□□□□ -1.22
SS18-223	ENST00000583595	ELOA3C	A0A087WX78	387 aa	Predicted RBP	7.44	□□□□□ -1.22
SS18-223	ENST00000583595	ELOA3D	A6NLF2	546 aa	Predicted RBP	7.44	□□□□□ -1.22
SS18-223	ENST00000583595	ALAS2	P22557	587 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	MTMR3	Q13615	1198 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	ELOA3B	Q3SY89	546 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	IER5	Q5VY09	327 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	ELOA3	Q8NG57	546 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	SREK1	Q8WXA9	508 aa	Known RBP	7.44	□□□□□ -1.22
SS18-223	ENST00000583595	C8orf37	Q96NL8	207 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	SUV39H2	Q9H5I1	410 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	KLK14	Q9P0G3	267 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	BCS1L	Q9Y276	419 aa		7.44	□□□□□ -1.22
SS18-223	ENST00000583595	TGFBR3L	H3BV60	316 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	PIK3R2	O00459	728 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	GNB5	O14775	395 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	RECK	O95980	971 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	COL8A1	P27658	744 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	TSNAXIP1	Q2TAA8	658 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	NAALADL2	Q58DX5	795 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	ASB16	Q96NS5	453 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	MKNK1	Q9BUB5	465 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	QTRT2	Q9H974	415 aa	Known RBP	7.43	□□□□□ -1.22
SS18-223	ENST00000583595	DCTN4	Q9UJW0	460 aa		7.43	□□□□□ -1.22
SS18-223	ENST00000583595	ADARB2-AS1	A8MUL3	147 aa		7.42	□□□□□ -1.22
SS18-223	ENST00000583595	ARHGAP4	P98171	946 aa		7.42	□□□□□ -1.22
SS18-223	ENST00000583595	FKBP4	Q02790	459 aa	Known RBP eCLIP	7.42	□□□□□ -1.22
SS18-223	ENST00000583595	DGKZ	Q13574	1117 aa		7.42	□□□□□ -1.22
SS18-223	ENST00000583595	PLA2G4E	Q3MJ16	856 aa		7.42	□□□□□ -1.22
SS18-223	ENST00000583595	C9orf131	Q5VYM1	1079 aa		7.42	□□□□□ -1.22
SS18-223	ENST00000583595	BHMT	Q93088	406 aa		7.42	□□□□□ -1.22
SS18-223	ENST00000583595	MDFI	Q99750	246 aa		7.42	□□□□□ -1.22
SS18-223	ENST00000583595	BACH2	Q9BYV9	841 aa		7.42	□□□□□ -1.22
SS18-223	ENST00000583595	DMGDH	Q9UI17	866 aa	Known RBP	7.42	□□□□□ -1.22
SS18-223	ENST00000583595	IGHA1	P01876	353 aa		7.41	□□□□□ -1.22
SS18-223	ENST00000583595	ZC3H6	P61129	1189 aa	Known RBP	7.41	□□□□□ -1.22
SS18-223	ENST00000583595	TNFRSF25	Q93038	417 aa		7.41	□□□□□ -1.22
SS18-223	ENST00000583595	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	7.41	□□□□□ -1.22
SS18-223	ENST00000583595	KRBA1	A5PL33	1030 aa		7.4	□□□□□ -1.22
SS18-223	ENST00000583595	SMARCA5	O60264	1052 aa	Predicted RBP	7.4	□□□□□ -1.22
SS18-223	ENST00000583595	FKBP5	Q13451	457 aa	Predicted RBP	7.4	□□□□□ -1.22
SS18-223	ENST00000583595	NAA30	Q147X3	362 aa	Predicted RBP	7.4	□□□□□ -1.22
SS18-223	ENST00000583595	C11orf91	Q3C1V1	193 aa		7.4	□□□□□ -1.22
SS18-223	ENST00000583595	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	7.4	□□□□□ -1.22
SS18-223	ENST00000583595	MYO19	Q96H55	970 aa		7.4	□□□□□ -1.22
SS18-223	ENST00000583595	ITGB2	P05107	769 aa		7.39	□□□□□ -1.23
SS18-223	ENST00000583595	ADH7	P40394	386 aa		7.39	□□□□□ -1.23
SS18-223	ENST00000583595	IDH3A	P50213	366 aa		7.39	□□□□□ -1.23
SS18-223	ENST00000583595	EAPP	Q56P03	285 aa	Predicted RBP	7.39	□□□□□ -1.23
SS18-223	ENST00000583595	ALYREF	Q86V81	257 aa	Known RBP	7.39	□□□□□ -1.23
SS18-223	ENST00000583595	GSX2	Q9BZM3	304 aa		7.39	□□□□□ -1.23
SS18-223	ENST00000583595	NOP53	Q9NZM5	478 aa	Known RBP	7.39	□□□□□ -1.23
SS18-223	ENST00000583595	LRFN2	Q9ULH4	789 aa		7.39	□□□□□ -1.23
SS18-223	ENST00000583595	STARD13	Q9Y3M8	1113 aa		7.39	□□□□□ -1.23
SS18-223	ENST00000583595	MICAL2	O94851	1124 aa		7.38	□□□□□ -1.23
SS18-223	ENST00000583595	EPB42	P16452	691 aa		7.38	□□□□□ -1.23
SS18-223	ENST00000583595	INPP5B	P32019	993 aa		7.38	□□□□□ -1.23
SS18-223	ENST00000583595	TBC1D8B	Q0IIM8	1120 aa		7.38	□□□□□ -1.23
SS18-223	ENST00000583595	CCIN	Q13939	588 aa		7.38	□□□□□ -1.23
SS18-223	ENST00000583595	TRIM11	Q96F44	468 aa		7.38	□□□□□ -1.23
SS18-223	ENST00000583595	IFT43	Q96FT9	208 aa		7.38	□□□□□ -1.23
SS18-223	ENST00000583595	IGFLR1	Q9H665	355 aa		7.38	□□□□□ -1.23
SS18-223	ENST00000583595		M0R082	166 aa		7.37	□□□□□ -1.23
SS18-223	ENST00000583595	MSTN	O14793	375 aa		7.37	□□□□□ -1.23
SS18-223	ENST00000583595	ERCC5	P28715	1186 aa	Predicted RBP	7.37	□□□□□ -1.23
SS18-223	ENST00000583595	GRN	P28799	593 aa	Known RBP	7.37	□□□□□ -1.23
SS18-223	ENST00000583595	SUZ12	Q15022	739 aa	Known RBP	7.37	□□□□□ -1.23
SS18-223	ENST00000583595	COX20	Q5RI15	118 aa		7.37	□□□□□ -1.23
SS18-223	ENST00000583595	ZNF417	Q8TAU3	575 aa		7.37	□□□□□ -1.23
SS18-223	ENST00000583595	PNMA5	Q96PV4	448 aa		7.37	□□□□□ -1.23
SS18-223	ENST00000583595	ZNF587	Q96SQ5	575 aa	Predicted RBP	7.37	□□□□□ -1.23
SS18-223	ENST00000583595	PLVAP	Q9BX97	442 aa		7.37	□□□□□ -1.23
SS18-223	ENST00000583595	UBE2O	Q9C0C9	1292 aa	Known RBP	7.37	□□□□□ -1.23
SS18-223	ENST00000583595	EFCC1	Q9HA90	598 aa		7.37	□□□□□ -1.23
SS18-223	ENST00000583595	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	7.37	□□□□□ -1.23
SS18-223	ENST00000583595	ALB	P02768	609 aa		7.36	□□□□□ -1.23
SS18-223	ENST00000583595	NFKB1	P19838	968 aa		7.36	□□□□□ -1.23
SS18-223	ENST00000583595	ARSD	P51689	593 aa		7.36	□□□□□ -1.23
SS18-223	ENST00000583595	HDLBP	Q00341	1268 aa	Known RBP	7.36	□□□□□ -1.23
SS18-223	ENST00000583595	SF3B2	Q13435	895 aa	Known RBP	7.36	□□□□□ -1.23
SS18-223	ENST00000583595	LDLRAD1	Q5T700	205 aa		7.36	□□□□□ -1.23
SS18-223	ENST00000583595	C8orf86	Q6ZUL3	223 aa		7.36	□□□□□ -1.23
SS18-223	ENST00000583595	MICALL1	Q8N3F8	863 aa		7.36	□□□□□ -1.23
SS18-223	ENST00000583595	SPOCK3	Q9BQ16	436 aa		7.36	□□□□□ -1.23
SS18-223	ENST00000583595	OPLAH	O14841	1288 aa		7.35	□□□□□ -1.23
SS18-223	ENST00000583595	P4HB	P07237	508 aa	Known RBP	7.35	□□□□□ -1.23
SS18-223	ENST00000583595	COL19A1	Q14993	1142 aa		7.35	□□□□□ -1.23
SS18-223	ENST00000583595	UBXN4	Q92575	508 aa		7.35	□□□□□ -1.23
SS18-223	ENST00000583595	CADPS	Q9ULU8	1353 aa		7.34	□□□□□ -1.23
SS18-223	ENST00000583595	MRPL58	Q14197	206 aa	Known RBP	7.34	□□□□□ -1.23
SS18-223	ENST00000583595	KRT25	Q7Z3Z0	450 aa		7.34	□□□□□ -1.23
SS18-223	ENST00000583595	TREML1	Q86YW5	311 aa		7.34	□□□□□ -1.23
SS18-223	ENST00000583595	RGL4	Q8IZJ4	473 aa		7.34	□□□□□ -1.23
SS18-223	ENST00000583595	SAP130	Q9H0E3	1048 aa		7.34	□□□□□ -1.23
SS18-223	ENST00000583595	RNF19A	Q9NV58	838 aa		7.34	□□□□□ -1.23

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