RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 ABCC4O15439 1325 aa11.86□□□□□ -0.51
SMG6-218ENST00000575454 VIRMAQ69YN4 1812 aaKnown RBP11.86□□□□□ -0.51
SMG6-218ENST00000575454 RAD17O75943 681 aa11.86□□□□□ -0.51
SMG6-218ENST00000575454 HUNKP57058 714 aa11.86□□□□□ -0.51
SMG6-218ENST00000575454 DPF2Q92785 391 aa11.86□□□□□ -0.51
SMG6-218ENST00000575454 CCDC102AQ96A19 550 aa11.86□□□□□ -0.51
SMG6-218ENST00000575454 SAGE1Q9NXZ1 904 aa11.86□□□□□ -0.51
SMG6-218ENST00000575454 HIRAP54198 1017 aaPredicted RBP11.85□□□□□ -0.51
SMG6-218ENST00000575454 GRAPQ13588 217 aa11.85□□□□□ -0.51
SMG6-218ENST00000575454 NFE2L2Q16236 605 aa11.85□□□□□ -0.51
SMG6-218ENST00000575454 GRAPLQ8TC17 118 aaPredicted RBP11.85□□□□□ -0.51
SMG6-218ENST00000575454 COL4A5P29400 1685 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 RGMBQ6NW40 437 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 USP48Q86UV5 1035 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 MICALL2Q8IY33 904 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 C2orf69Q8N8R5 385 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 TRPM4Q8TD43 1214 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 BABAM1Q9NWV8 329 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 TSPYL4Q9UJ04 414 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 BCORQ6W2J9 1755 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 SH3TC1Q8TE82 1336 aa11.84□□□□□ -0.51
SMG6-218ENST00000575454 ARFGEF2Q9Y6D5 1785 aa11.83□□□□□ -0.52
SMG6-218ENST00000575454 RPS12P25398 132 aaKnown RBP11.83□□□□□ -0.52
SMG6-218ENST00000575454 WASHC4Q2M389 1173 aa11.83□□□□□ -0.52
SMG6-218ENST00000575454 KRT26Q7Z3Y9 468 aa11.83□□□□□ -0.52
SMG6-218ENST00000575454 REM2Q8IYK8 340 aaPredicted RBP11.83□□□□□ -0.52
SMG6-218ENST00000575454 TRMT112Q9UI30 125 aaKnown RBP11.83□□□□□ -0.52
SMG6-218ENST00000575454 MAPK8IP3Q9UPT6 1336 aa11.83□□□□□ -0.52
SMG6-218ENST00000575454 HCLS1P14317 486 aaPredicted RBP11.82□□□□□ -0.52
SMG6-218ENST00000575454 EIF2S2P20042 333 aaKnown RBP11.82□□□□□ -0.52
SMG6-218ENST00000575454 PDIA6Q15084 440 aa11.82□□□□□ -0.52
SMG6-218ENST00000575454 LRP10Q7Z4F1 713 aa11.82□□□□□ -0.52
SMG6-218ENST00000575454 SLC51AQ86UW1 340 aa11.82□□□□□ -0.52
SMG6-218ENST00000575454 NLRP10Q86W26 655 aa11.82□□□□□ -0.52
SMG6-218ENST00000575454 DCPSQ96C86 337 aaKnown RBP11.82□□□□□ -0.52
SMG6-218ENST00000575454 PLEKHF1Q96S99 279 aa11.82□□□□□ -0.52
SMG6-218ENST00000575454 GBA2Q9HCG7 927 aaPredicted RBP11.82□□□□□ -0.52
SMG6-218ENST00000575454 SIPA1L3O60292 1781 aaPredicted RBP11.82□□□□□ -0.52
SMG6-218ENST00000575454 ZNF157P51786 506 aaPredicted RBP11.81□□□□□ -0.52
SMG6-218ENST00000575454 TCIRG1Q13488 830 aa11.81□□□□□ -0.52
SMG6-218ENST00000575454 COPS6Q7L5N1 327 aa11.81□□□□□ -0.52
SMG6-218ENST00000575454 EYA3Q99504 573 aa11.81□□□□□ -0.52
SMG6-218ENST00000575454 THUMPD2Q9BTF0 503 aaKnown RBP11.81□□□□□ -0.52
SMG6-218ENST00000575454 THSD7BQ9C0I4 1608 aa11.81□□□□□ -0.52
SMG6-218ENST00000575454 YDJCA8MPS7 323 aa11.8□□□□□ -0.52
SMG6-218ENST00000575454 KIF23Q02241 960 aaPredicted RBP11.8□□□□□ -0.52
SMG6-218ENST00000575454 SULF1Q8IWU6 871 aa11.8□□□□□ -0.52
SMG6-218ENST00000575454 NSFL1CQ9UNZ2 370 aaKnown RBP11.8□□□□□ -0.52
SMG6-218ENST00000575454 ZBTB12Q9Y330 459 aaPredicted RBP11.8□□□□□ -0.52
SMG6-218ENST00000575454 FAM155AB1AL88 458 aaPredicted RBP11.79□□□□□ -0.52
SMG6-218ENST00000575454 PSMD14O00487 310 aa11.79□□□□□ -0.52
SMG6-218ENST00000575454 LMOD3Q0VAK6 560 aa11.79□□□□□ -0.52
SMG6-218ENST00000575454 TBC1D10BQ4KMP7 808 aaPredicted RBP11.79□□□□□ -0.52
SMG6-218ENST00000575454 SAMD7Q7Z3H4 446 aa11.79□□□□□ -0.52
SMG6-218ENST00000575454 XAGE3Q8WTP9 111 aa11.79□□□□□ -0.52
SMG6-218ENST00000575454 ZIC5Q96T25 663 aa11.79□□□□□ -0.52
SMG6-218ENST00000575454 RNF186Q9NXI6 227 aa11.79□□□□□ -0.52
SMG6-218ENST00000575454 LTBP1Q14766 1721 aa11.79□□□□□ -0.52
SMG6-218ENST00000575454 C6orf229H3BNL8 230 aa11.78□□□□□ -0.52
SMG6-218ENST00000575454 TRPA1O75762 1119 aa11.78□□□□□ -0.52
SMG6-218ENST00000575454 HSP90B1P14625 803 aaKnown RBP11.78□□□□□ -0.52
SMG6-218ENST00000575454 AIMP1Q12904 312 aaKnown RBP11.78□□□□□ -0.52
SMG6-218ENST00000575454 SF3B3Q15393 1217 aaKnown RBP11.78□□□□□ -0.52
SMG6-218ENST00000575454 PROSER3Q2NL68 480 aa11.78□□□□□ -0.52
SMG6-218ENST00000575454 SHTN1A0MZ66 631 aa11.77□□□□□ -0.53
SMG6-218ENST00000575454 SLC10A3P09131 477 aa11.77□□□□□ -0.53
SMG6-218ENST00000575454 RIPK4P57078 832 aa11.77□□□□□ -0.53
SMG6-218ENST00000575454 FKBP1BP68106 108 aa11.77□□□□□ -0.53
SMG6-218ENST00000575454 PKN2Q16513 984 aaKnown RBP11.77□□□□□ -0.53
SMG6-218ENST00000575454 RBM26Q5T8P6 1007 aaKnown RBP11.77□□□□□ -0.53
SMG6-218ENST00000575454 CTU1Q7Z7A3 348 aaKnown RBP11.77□□□□□ -0.53
SMG6-218ENST00000575454 NECTIN2Q92692 538 aa11.77□□□□□ -0.53
SMG6-218ENST00000575454 CSRNP1Q96S65 589 aa11.77□□□□□ -0.53
SMG6-218ENST00000575454 ZC3H12CQ9C0D7 883 aaKnown RBP11.77□□□□□ -0.53
SMG6-218ENST00000575454 DBNDD1Q9H9R9 158 aa11.77□□□□□ -0.53
SMG6-218ENST00000575454 ADM5C9JUS6 153 aa11.76□□□□□ -0.53
SMG6-218ENST00000575454 G3V3G9 751 aa11.76□□□□□ -0.53
SMG6-218ENST00000575454 RIMBP2O15034 1052 aa11.76□□□□□ -0.53
SMG6-218ENST00000575454 ECE2O60344 883 aa11.76□□□□□ -0.53
SMG6-218ENST00000575454 ANXA1P04083 346 aa11.76□□□□□ -0.53
SMG6-218ENST00000575454 VIL1P09327 827 aaKnown RBP11.76□□□□□ -0.53
SMG6-218ENST00000575454 KIF4BQ2VIQ3 1234 aa11.76□□□□□ -0.53
SMG6-218ENST00000575454 DCAF8Q5TAQ9 597 aa11.76□□□□□ -0.53
SMG6-218ENST00000575454 PRPF38BQ5VTL8 546 aaKnown RBP11.76□□□□□ -0.53
SMG6-218ENST00000575454 SOX10P56693 466 aa11.75□□□□□ -0.53
SMG6-218ENST00000575454 RPS8P62241 208 aaKnown RBP11.75□□□□□ -0.53
SMG6-218ENST00000575454 GPSM2P81274 684 aa11.75□□□□□ -0.53
SMG6-218ENST00000575454 DLK2Q6UY11 383 aa11.75□□□□□ -0.53
SMG6-218ENST00000575454 ANKRD13DQ6ZTN6 518 aa11.75□□□□□ -0.53
SMG6-218ENST00000575454 AGBL3Q8NEM8 1001 aa11.75□□□□□ -0.53
SMG6-218ENST00000575454 PLBD2Q8NHP8 589 aa11.75□□□□□ -0.53
SMG6-218ENST00000575454 TBC1D16Q8TBP0 767 aa11.75□□□□□ -0.53
SMG6-218ENST00000575454 POLLQ9UGP5 575 aa11.75□□□□□ -0.53
SMG6-218ENST00000575454 EGFRP00533 1210 aa11.74□□□□□ -0.53
SMG6-218ENST00000575454 HOXB7P09629 217 aa11.74□□□□□ -0.53
SMG6-218ENST00000575454 ZNF280AP59817 542 aaPredicted RBP11.74□□□□□ -0.53
SMG6-218ENST00000575454 TRIM28Q13263 835 aaKnown RBP11.74□□□□□ -0.53
SMG6-218ENST00000575454 DOK7Q18PE1 504 aa11.74□□□□□ -0.53
SMG6-218ENST00000575454 CELF1Q92879 486 aaKnown RBP11.74□□□□□ -0.53
SMG6-218ENST00000575454 CDCA5Q96FF9 252 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms