RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 CHMP4CQ96CF2 233 aa8.18□□□□□ -1.1
SMG6-217ENST00000575338 ZSCAN31Q96LW9 406 aaPredicted RBP8.18□□□□□ -1.1
SMG6-217ENST00000575338 HAUS7Q99871 368 aa8.18□□□□□ -1.1
SMG6-217ENST00000575338 CCDC8Q9H0W5 538 aaPredicted RBP8.18□□□□□ -1.1
SMG6-217ENST00000575338 ZNF330Q9Y3S2 320 aaPredicted RBP8.18□□□□□ -1.1
SMG6-217ENST00000575338 CCDC9Q9Y3X0 531 aaKnown RBP8.18□□□□□ -1.1
SMG6-217ENST00000575338 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.18□□□□□ -1.1
SMG6-217ENST00000575338 SPATA31A6Q5VVP1 1343 aa8.18□□□□□ -1.1
SMG6-217ENST00000575338 CCDC171Q6TFL3 1326 aa8.18□□□□□ -1.1
SMG6-217ENST00000575338 PALLDQ8WX93 1383 aa8.18□□□□□ -1.1
SMG6-217ENST00000575338 ZNF609O15014 1411 aa8.18□□□□□ -1.1
SMG6-217ENST00000575338 ANKRD18BA2A2Z9 1011 aa8.17□□□□□ -1.1
SMG6-217ENST00000575338 ZFYP08048 801 aaPredicted RBP8.17□□□□□ -1.1
SMG6-217ENST00000575338 TFCP2Q12800 502 aa8.17□□□□□ -1.1
SMG6-217ENST00000575338 ARXQ96QS3 562 aa8.17□□□□□ -1.1
SMG6-217ENST00000575338 LSG1Q9H089 658 aaKnown RBP8.17□□□□□ -1.1
SMG6-217ENST00000575338 BOLA2Q9H3K6 86 aa8.17□□□□□ -1.1
SMG6-217ENST00000575338 SH2B1Q9NRF2 756 aaPredicted RBP8.17□□□□□ -1.1
SMG6-217ENST00000575338 CCDC87Q9NVE4 849 aa8.17□□□□□ -1.1
SMG6-217ENST00000575338 PDE8AO60658 829 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 MAP4K4O95819 1239 aaPredicted RBP8.16□□□□□ -1.1
SMG6-217ENST00000575338 CSF1RP07333 972 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 PRIM1P49642 420 aaKnown RBP8.16□□□□□ -1.1
SMG6-217ENST00000575338 CUL4AQ13619 759 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 VPS72Q15906 364 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 GORABQ5T7V8 394 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 VPS53Q5VIR6 699 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 ZSCAN25Q6NSZ9 544 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 NHSQ6T4R5 1651 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 DZIP3Q86Y13 1208 aaKnown RBP8.16□□□□□ -1.1
SMG6-217ENST00000575338 KBTBD3Q8NAB2 608 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 SH3TC1Q8TE82 1336 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 MAP4K1Q92918 833 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 KCNB2Q92953 911 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 TNPO1Q92973 898 aaKnown RBP8.16□□□□□ -1.1
SMG6-217ENST00000575338 HELLSQ9NRZ9 838 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 CYP46A1Q9Y6A2 500 aa8.16□□□□□ -1.1
SMG6-217ENST00000575338 U3KPZ7 1027 aaPredicted RBP8.16□□□□□ -1.1
SMG6-217ENST00000575338 MED23Q9ULK4 1368 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 NUTM2BA6NNL0 878 aaPredicted RBP8.15□□□□□ -1.1
SMG6-217ENST00000575338 NUTM2EB1AL46 878 aaPredicted RBP8.15□□□□□ -1.1
SMG6-217ENST00000575338 UBAP1LF5GYI3 381 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 CD2BP2O95400 341 aaKnown RBP8.15□□□□□ -1.1
SMG6-217ENST00000575338 HMGB1P09429 215 aaKnown RBP8.15□□□□□ -1.1
SMG6-217ENST00000575338 ATP6V1AP38606 617 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 PIP4K2BP78356 416 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 NMIQ13287 307 aaPredicted RBP8.15□□□□□ -1.1
SMG6-217ENST00000575338 MCMDC2Q4G0Z9 681 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 NLRP10Q86W26 655 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 NUTM2AQ8IVF1 878 aaPredicted RBP8.15□□□□□ -1.1
SMG6-217ENST00000575338 KLHDC4Q8TBB5 520 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 TMX3Q96JJ7 454 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 NEUROD6Q96NK8 337 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 TRMT112Q9UI30 125 aaKnown RBP8.15□□□□□ -1.1
SMG6-217ENST00000575338 DBNLQ9UJU6 430 aaKnown RBP8.15□□□□□ -1.1
SMG6-217ENST00000575338 LIMCH1Q9UPQ0 1083 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 ZBTB1Q9Y2K1 713 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 ATP6V1DQ9Y5K8 247 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 SNX14Q9Y5W7 946 aa8.15□□□□□ -1.1
SMG6-217ENST00000575338 DDX60Q8IY21 1712 aaKnown RBP8.15□□□□□ -1.11
SMG6-217ENST00000575338 SCN7AQ01118 1682 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 MROH5Q6ZUA9 1318 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 WDR33Q9C0J8 1336 aaKnown RBP8.14□□□□□ -1.11
SMG6-217ENST00000575338 LOC102724428A0A0B4J2F2 783 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 A0A1B0GUL7 405 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 IRS4O14654 1257 aaPredicted RBP8.14□□□□□ -1.11
SMG6-217ENST00000575338 TRAK2O60296 914 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 IFIT1P09914 478 aaKnown RBP8.14□□□□□ -1.11
SMG6-217ENST00000575338 SSFA2P28290 1259 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 EIF5P55010 431 aaKnown RBP8.14□□□□□ -1.11
SMG6-217ENST00000575338 CTSWP56202 376 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 SIK1P57059 783 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 NECTIN1Q15223 517 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 TTF1Q15361 905 aaPredicted RBP8.14□□□□□ -1.11
SMG6-217ENST00000575338 CSPP1Q1MSJ5 1256 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 TSGA10IPQ3SY00 556 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 TTC39AQ5SRH9 613 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 CLEC4GQ6UXB4 293 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 RUFY3Q7L099 469 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 ATG9AQ7Z3C6 839 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 NGLY1Q96IV0 654 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 ZNF512BQ96KM6 892 aaPredicted RBP8.14□□□□□ -1.11
SMG6-217ENST00000575338 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.14□□□□□ -1.11
SMG6-217ENST00000575338 ALDH8A1Q9H2A2 487 aaPredicted RBP8.14□□□□□ -1.11
SMG6-217ENST00000575338 ZSWIM6Q9HCJ5 1215 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 CNNM1Q9NRU3 951 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 PAG1Q9NWQ8 432 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 RBM8AQ9Y5S9 174 aaKnown RBP8.14□□□□□ -1.11
SMG6-217ENST00000575338 BTAF1O14981 1849 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 CASZ1Q86V15 1759 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 THSD7AQ9UPZ6 1657 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 LRP5O75197 1615 aa8.14□□□□□ -1.11
SMG6-217ENST00000575338 MYH14Q7Z406 1995 aaKnown RBP8.13□□□□□ -1.11
SMG6-217ENST00000575338 RTL9Q8NET4 1388 aa8.13□□□□□ -1.11
SMG6-217ENST00000575338 LAMA4Q16363 1823 aa8.13□□□□□ -1.11
SMG6-217ENST00000575338 A0A0G2JS52 829 aa8.13□□□□□ -1.11
SMG6-217ENST00000575338 UQCRFS1P1P0C7P4 283 aa8.13□□□□□ -1.11
SMG6-217ENST00000575338 NCLP19338 710 aaKnown RBP8.13□□□□□ -1.11
SMG6-217ENST00000575338 CASTP20810 708 aaKnown RBP8.13□□□□□ -1.11
SMG6-217ENST00000575338 PDCP20941 246 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms