RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 ZNF710Q8N1W2 664 aa12.7□□□□□ -0.38
CCDC40-207ENST00000572253 ZNF75DP51815 510 aa12.69□□□□□ -0.38
CCDC40-207ENST00000572253 TSGA10IPQ3SY00 556 aa12.69□□□□□ -0.38
CCDC40-207ENST00000572253 NEK1Q96PY6 1258 aa12.69□□□□□ -0.38
CCDC40-207ENST00000572253 TDRD7Q8NHU6 1098 aaKnown RBP12.69□□□□□ -0.38
CCDC40-207ENST00000572253 UTYO14607 1347 aa12.69□□□□□ -0.38
CCDC40-207ENST00000572253 MED23Q9ULK4 1368 aa12.69□□□□□ -0.38
CCDC40-207ENST00000572253 KDM3BQ7LBC6 1761 aa12.69□□□□□ -0.38
CCDC40-207ENST00000572253 TOB2Q14106 344 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-207ENST00000572253 JARID2Q92833 1246 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-207ENST00000572253 CTAGE5O15320 804 aa12.68□□□□□ -0.38
CCDC40-207ENST00000572253 BRF1Q92994 677 aa12.68□□□□□ -0.38
CCDC40-207ENST00000572253 GTF3C6Q969F1 213 aa12.68□□□□□ -0.38
CCDC40-207ENST00000572253 TLR7Q9NYK1 1049 aaKnown RBP12.68□□□□□ -0.38
CCDC40-207ENST00000572253 CHD2O14647 1828 aaKnown RBP12.68□□□□□ -0.38
CCDC40-207ENST00000572253 USP54Q70EL1 1684 aa12.68□□□□□ -0.38
CCDC40-207ENST00000572253 OVOS2A0A0G2JMS6 1433 aa12.68□□□□□ -0.38
CCDC40-207ENST00000572253 TAF5LO75529 589 aa12.68□□□□□ -0.38
CCDC40-207ENST00000572253 RBM43Q6ZSC3 357 aaKnown RBP12.68□□□□□ -0.38
CCDC40-207ENST00000572253 CLIP2Q9UDT6 1046 aa12.68□□□□□ -0.38
CCDC40-207ENST00000572253 FAM177BA6PVY3 158 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 CCDC73Q6ZRK6 1079 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 CHMP4CQ96CF2 233 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 DNAJC25Q9H1X3 360 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 PRDM10Q9NQV6 1147 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 SMTNL1A8MU46 457 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 BECN2A8MW95 431 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 CBX1P83916 185 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 ESCO1Q5FWF5 840 aa12.67□□□□□ -0.38
CCDC40-207ENST00000572253 NEMFO60524 1076 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 HMGB1P09429 215 aaKnown RBP12.66□□□□□ -0.38
CCDC40-207ENST00000572253 ATP5JP18859 108 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 TPD52L1Q16890 204 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-207ENST00000572253 ZNF589Q86UQ0 364 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-207ENST00000572253 PAXBP1Q9Y5B6 917 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 NPHP4O75161 1426 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-207ENST00000572253 NR1I2O75469 434 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 TNNT1P13805 278 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 ZSCAN25Q6NSZ9 544 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 Q6ZUG5 572 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 C16orf45Q96MC5 204 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-207ENST00000572253 RESTQ13127 1097 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 PLA2G4DQ86XP0 818 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 CCDC112Q8NEF3 446 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 DDX11Q96FC9 970 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 KAZALD1Q96I82 304 aa12.66□□□□□ -0.38
CCDC40-207ENST00000572253 ZNF396Q96N95 335 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-207ENST00000572253 JAK2O60674 1132 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 CDC25BP30305 580 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 STX1AQ16623 288 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 UTP14CQ5TAP6 766 aaKnown RBP12.65□□□□□ -0.38
CCDC40-207ENST00000572253 USPL1Q5W0Q7 1092 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 LMOD2Q6P5Q4 547 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 ANKRD24Q8TF21 1146 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 DNAJC2Q99543 621 aaKnown RBP12.65□□□□□ -0.38
CCDC40-207ENST00000572253 LLPHQ9BRT6 129 aaKnown RBP12.65□□□□□ -0.38
CCDC40-207ENST00000572253 MYD88Q99836 296 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 SETD1BQ9UPS6 1966 aaKnown RBP12.65□□□□□ -0.38
CCDC40-207ENST00000572253 LTN1O94822 1766 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 CTIFO43310 598 aaKnown RBP12.65□□□□□ -0.38
CCDC40-207ENST00000572253 KINO60870 393 aaKnown RBP12.65□□□□□ -0.38
CCDC40-207ENST00000572253 RFX7Q2KHR2 1363 aa12.65□□□□□ -0.38
CCDC40-207ENST00000572253 PRAMEF22A3QJZ6 481 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 NEURL1BA8MQ27 555 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 LRMPQ12912 555 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 GCKRQ14397 625 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 MCMDC2Q4G0Z9 681 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 PGBD1Q96JS3 809 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 GTPBP4Q9BZE4 634 aaKnown RBP12.64□□□□□ -0.39
CCDC40-207ENST00000572253 HEG1Q9ULI3 1381 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 LMO7Q8WWI1 1683 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 MARF1Q9Y4F3 1742 aaKnown RBP12.64□□□□□ -0.39
CCDC40-207ENST00000572253 MYL6BP14649 208 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 SYCP1Q15431 976 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 ZRSR1Q15695 479 aaKnown RBP12.64□□□□□ -0.39
CCDC40-207ENST00000572253 KLHDC4Q8TBB5 520 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 COPRSQ9NQ92 184 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 TNNI3KQ59H18 835 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 ANKRD7Q92527 254 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 FPGT-TNNI3KV9GXZ4 949 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 JCADQ9P266 1359 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 NFAT5O94916 1531 aa12.64□□□□□ -0.39
CCDC40-207ENST00000572253 IGKV5-2P06315 115 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 CEBPZQ03701 1054 aaKnown RBP12.63□□□□□ -0.39
CCDC40-207ENST00000572253 DMTNQ08495 405 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 ATL3Q6DD88 541 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 NAA16Q6N069 864 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-207ENST00000572253 XAGE3Q8WTP9 111 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 METTL22Q9BUU2 404 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-207ENST00000572253 PRDM4Q9UKN5 801 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 TAF6LQ9Y6J9 622 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 CCAR1Q8IX12 1150 aaKnown RBP12.63□□□□□ -0.39
CCDC40-207ENST00000572253 FEZ1Q99689 392 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 ANO10Q9NW15 660 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 NRBP1Q9UHY1 535 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 NAP1L2Q9ULW6 460 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-207ENST00000572253 GCP02774 474 aa12.63□□□□□ -0.39
CCDC40-207ENST00000572253 EDC3Q96F86 508 aaKnown RBP12.63□□□□□ -0.39
CCDC40-207ENST00000572253 NAT10Q9H0A0 1025 aaKnown RBP12.63□□□□□ -0.39
CCDC40-207ENST00000572253 ARHGEF25Q86VW2 580 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms