RNA–Protein interactions for RNA: ENST00000569128.1

CDH11-216, Transcript of cadherin 11, human

TSL 3

Gene CDH11, Length 781 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDH11-216	ENST00000569128	GPC1	P35052	558 aa		11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	RNF144A	P50876	292 aa	Predicted RBP	11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	GRIP2	Q9C0E4	1043 aa		11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	PARP3	Q9Y6F1	533 aa		11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	ZMYM3	Q14202	1370 aa		11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	PTCD1	O75127	700 aa	Known RBP	11.34	□□□□□ -0.59
CDH11-216	ENST00000569128	SCARF1	Q14162	830 aa		11.34	□□□□□ -0.59
CDH11-216	ENST00000569128	CTC1	Q2NKJ3	1217 aa		11.34	□□□□□ -0.59
CDH11-216	ENST00000569128	ZNF295-AS1	Q8N0V1	137 aa		11.34	□□□□□ -0.59
CDH11-216	ENST00000569128	ZDHHC1	Q8WTX9	485 aa		11.34	□□□□□ -0.59
CDH11-216	ENST00000569128	ZNF232	Q9UNY5	417 aa		11.34	□□□□□ -0.59
CDH11-216	ENST00000569128	CHMP3	Q9Y3E7	222 aa		11.34	□□□□□ -0.59
CDH11-216	ENST00000569128	SERTM1	A2A2V5	107 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	AXIN1	O15169	862 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	ZNF211	Q13398	564 aa	Predicted RBP	11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	TEAD4	Q15561	434 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	SH3PXD2A	Q5TCZ1	1133 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	TRIM46	Q7Z4K8	759 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	STAG2	Q8N3U4	1231 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	RHBDD1	Q8TEB9	315 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	ANO2	Q9NQ90	1003 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	ARHGAP31	Q2M1Z3	1444 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	ZC3H13	Q5T200	1668 aa	Known RBP	11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	CLSPN	Q9HAW4	1339 aa		11.33	□□□□□ -0.6
CDH11-216	ENST00000569128	MADD	Q8WXG6	1647 aa		11.32	□□□□□ -0.6
CDH11-216	ENST00000569128	NOS2	P35228	1153 aa		11.32	□□□□□ -0.6
CDH11-216	ENST00000569128	SMCP	P49901	116 aa	Predicted RBP	11.32	□□□□□ -0.6
CDH11-216	ENST00000569128	GNAS	Q5JWF2	1037 aa		11.32	□□□□□ -0.6
CDH11-216	ENST00000569128	COL26A1	Q96A83	441 aa		11.32	□□□□□ -0.6
CDH11-216	ENST00000569128	NIFK	Q9BYG3	293 aa	Known RBP	11.32	□□□□□ -0.6
CDH11-216	ENST00000569128	ADAMTSL3	P82987	1691 aa		11.32	□□□□□ -0.6
CDH11-216	ENST00000569128	PTPRT	O14522	1441 aa		11.32	□□□□□ -0.6
CDH11-216	ENST00000569128	FER1L4	A9Z1Z3	1794 aa		11.31	□□□□□ -0.6
CDH11-216	ENST00000569128	EML1	O00423	815 aa		11.31	□□□□□ -0.6
CDH11-216	ENST00000569128	RNF217	Q8TC41	542 aa		11.31	□□□□□ -0.6
CDH11-216	ENST00000569128	L3MBTL2	Q969R5	705 aa		11.31	□□□□□ -0.6
CDH11-216	ENST00000569128	UGGT1	Q9NYU2	1555 aa		11.31	□□□□□ -0.6
CDH11-216	ENST00000569128	RIMS1	Q86UR5	1692 aa	Known RBP	11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	NOS1	P29475	1434 aa		11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	SOWAHD	A6NJG2	315 aa		11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	MTMR3	Q13615	1198 aa		11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	C4orf17	Q53FE4	359 aa		11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	PRICKLE2	Q7Z3G6	844 aa		11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	NGLY1	Q96IV0	654 aa		11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	HCN4	Q9Y3Q4	1203 aa		11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	11.3	□□□□□ -0.6
CDH11-216	ENST00000569128	SPHKAP	Q2M3C7	1700 aa		11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	CNTLN	Q9NXG0	1405 aa		11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	ST8SIA5	O15466	376 aa		11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	PHKA2	P46019	1235 aa		11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	PLA2G4A	P47712	749 aa		11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	SAP130	Q9H0E3	1048 aa		11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	ERVK-7	P63135	1459 aa		11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	RPRD2	Q5VT52	1461 aa	Known RBP	11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	PREX1	Q8TCU6	1659 aa		11.29	□□□□□ -0.6
CDH11-216	ENST00000569128	SYNM	O15061	1565 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	CLTCL1	P53675	1640 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	C3	P01024	1663 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	FIGNL2	A6NMB9	653 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	TTLL8	A6PVC2	850 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	POU4F2	Q12837	409 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	IDI1	Q13907	227 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	LAPTM4A	Q15012	233 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	POTEA	Q6S8J7	498 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	CRIPAK	Q8N1N5	446 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	ZFP42	Q96MM3	310 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	TRPM2	O94759	1503 aa		11.28	□□□□□ -0.6
CDH11-216	ENST00000569128	CCDC144A	A2RUR9	1427 aa		11.27	□□□□□ -0.6
CDH11-216	ENST00000569128	MROH2A	A6NES4	1674 aa		11.27	□□□□□ -0.6
CDH11-216	ENST00000569128	SPATA31C2	B4DYI2	1134 aa		11.27	□□□□□ -0.61
CDH11-216	ENST00000569128		H3BRB1	525 aa		11.27	□□□□□ -0.61
CDH11-216	ENST00000569128	HIRA	P54198	1017 aa	Predicted RBP	11.27	□□□□□ -0.61
CDH11-216	ENST00000569128	RGL3	Q3MIN7	710 aa		11.27	□□□□□ -0.61
CDH11-216	ENST00000569128	TUT1	Q9H6E5	874 aa	Known RBP	11.27	□□□□□ -0.61
CDH11-216	ENST00000569128	QTRT2	Q9H974	415 aa	Known RBP	11.27	□□□□□ -0.61
CDH11-216	ENST00000569128	EGFL7	Q9UHF1	273 aa		11.27	□□□□□ -0.61
CDH11-216	ENST00000569128	ICMT	O60725	284 aa		11.26	□□□□□ -0.61
CDH11-216	ENST00000569128	COX20	Q5RI15	118 aa		11.26	□□□□□ -0.61
CDH11-216	ENST00000569128	C16orf46	Q6P387	395 aa		11.26	□□□□□ -0.61
CDH11-216	ENST00000569128	LYSMD3	Q7Z3D4	306 aa		11.26	□□□□□ -0.61
CDH11-216	ENST00000569128	ALDH16A1	Q8IZ83	802 aa		11.26	□□□□□ -0.61
CDH11-216	ENST00000569128	AIDA	Q96BJ3	306 aa		11.26	□□□□□ -0.61
CDH11-216	ENST00000569128	AAAS	Q9NRG9	546 aa		11.26	□□□□□ -0.61
CDH11-216	ENST00000569128	SOS2	Q07890	1332 aa	Predicted RBP	11.26	□□□□□ -0.61
CDH11-216	ENST00000569128	SPATA31D1	Q6ZQQ2	1576 aa		11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	RHOQ	P17081	205 aa		11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	TXLNA	P40222	546 aa		11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	NBPF10	Q6P3W6	841 aa	Known RBP	11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	HELQ	Q8TDG4	1101 aa		11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	PHACTR1	Q9C0D0	580 aa		11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	BIN2	Q9UBW5	565 aa	Predicted RBP	11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	DACH1	Q9UI36	760 aa		11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	TNR	Q92752	1358 aa		11.25	□□□□□ -0.61
CDH11-216	ENST00000569128	RBM47	A0AV96	593 aa	Known RBP	11.24	□□□□□ -0.61
CDH11-216	ENST00000569128	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
CDH11-216	ENST00000569128	GLYCTK	Q8IVS8	523 aa		11.24	□□□□□ -0.61
CDH11-216	ENST00000569128	IRX2	Q9BZI1	471 aa	Predicted RBP	11.24	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms