RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 KIAA2012Q0VF49 1180 aa15.31■□□□□ 0.04
CDH3-208ENST00000569036 SUPT20HQ8NEM7 779 aa15.31■□□□□ 0.04
CDH3-208ENST00000569036 RBM17Q96I25 401 aaKnown RBP15.31■□□□□ 0.04
CDH3-208ENST00000569036 ZBTB12Q9Y330 459 aaPredicted RBP15.31■□□□□ 0.04
CDH3-208ENST00000569036 USP16Q9Y5T5 823 aa15.31■□□□□ 0.04
CDH3-208ENST00000569036 YDJCA8MPS7 323 aa15.3■□□□□ 0.04
CDH3-208ENST00000569036 TEFQ10587 303 aa15.3■□□□□ 0.04
CDH3-208ENST00000569036 HLFQ16534 295 aa15.3■□□□□ 0.04
CDH3-208ENST00000569036 CHRDL2Q6WN34 429 aa15.3■□□□□ 0.04
CDH3-208ENST00000569036 CDCA5Q96FF9 252 aa15.3■□□□□ 0.04
CDH3-208ENST00000569036 NYXQ9GZU5 481 aa15.3■□□□□ 0.04
CDH3-208ENST00000569036 R3HDMLQ9H3Y0 253 aa15.3■□□□□ 0.04
CDH3-208ENST00000569036 ATP6V0A2Q9Y487 856 aa15.3■□□□□ 0.04
CDH3-208ENST00000569036 LAMA3Q16787 3333 aa15.29■□□□□ 0.04
CDH3-208ENST00000569036 PRAMEF22A3QJZ6 481 aa15.29■□□□□ 0.04
CDH3-208ENST00000569036 HMOX1P09601 288 aa15.29■□□□□ 0.04
CDH3-208ENST00000569036 DPF2Q92785 391 aa15.29■□□□□ 0.04
CDH3-208ENST00000569036 TRIM17Q9Y577 477 aa15.29■□□□□ 0.04
CDH3-208ENST00000569036 NUP98P52948 1817 aa15.29■□□□□ 0.04
CDH3-208ENST00000569036 KCNQ3O43525 872 aa15.28■□□□□ 0.04
CDH3-208ENST00000569036 TM4SF4P48230 202 aa15.28■□□□□ 0.04
CDH3-208ENST00000569036 SULF1Q8IWU6 871 aa15.28■□□□□ 0.04
CDH3-208ENST00000569036 CFHR5Q9BXR6 569 aa15.28■□□□□ 0.04
CDH3-208ENST00000569036 GGA3Q9NZ52 723 aa15.28■□□□□ 0.04
CDH3-208ENST00000569036 RBM27Q9P2N5 1060 aaKnown RBP15.28■□□□□ 0.04
CDH3-208ENST00000569036 DPP8Q6V1X1 898 aaPredicted RBP15.27■□□□□ 0.04
CDH3-208ENST00000569036 C3orf67Q6ZVT6 689 aa15.27■□□□□ 0.04
CDH3-208ENST00000569036 OTOP1Q7RTM1 612 aa15.27■□□□□ 0.04
CDH3-208ENST00000569036 IL17REQ8NFR9 667 aa15.27■□□□□ 0.04
CDH3-208ENST00000569036 TMX4Q9H1E5 349 aaPredicted RBP15.27■□□□□ 0.04
CDH3-208ENST00000569036 IBTKQ9P2D0 1353 aaPredicted RBP15.26■□□□□ 0.03
CDH3-208ENST00000569036 ASTN2O75129 1339 aaPredicted RBP15.26■□□□□ 0.03
CDH3-208ENST00000569036 NBPF26B4DH59 902 aa15.26■□□□□ 0.03
CDH3-208ENST00000569036 FKBP1BP68106 108 aa15.26■□□□□ 0.03
CDH3-208ENST00000569036 RBM26Q5T8P6 1007 aaKnown RBP15.26■□□□□ 0.03
CDH3-208ENST00000569036 NBPF10Q6P3W6 841 aaKnown RBP15.26■□□□□ 0.03
CDH3-208ENST00000569036 ARMC5Q96C12 935 aa15.26■□□□□ 0.03
CDH3-208ENST00000569036 DUOX1Q9NRD9 1551 aa15.26■□□□□ 0.03
CDH3-208ENST00000569036 PSMD14O00487 310 aa15.25■□□□□ 0.03
CDH3-208ENST00000569036 MOB2Q70IA6 237 aa15.25■□□□□ 0.03
CDH3-208ENST00000569036 KIF4BQ2VIQ3 1234 aa15.24■□□□□ 0.03
CDH3-208ENST00000569036 ABCC4O15439 1325 aa15.23■□□□□ 0.03
CDH3-208ENST00000569036 MPNDQ8N594 471 aa15.23■□□□□ 0.03
CDH3-208ENST00000569036 PTPN22Q9Y2R2 807 aa15.23■□□□□ 0.03
CDH3-208ENST00000569036 UBN2Q6ZU65 1347 aa15.22■□□□□ 0.03
CDH3-208ENST00000569036 RPS12P25398 132 aaKnown RBP15.22■□□□□ 0.03
CDH3-208ENST00000569036 SREBF2Q12772 1141 aa15.22■□□□□ 0.03
CDH3-208ENST00000569036 MKRN3Q13064 507 aaKnown RBP15.22■□□□□ 0.03
CDH3-208ENST00000569036 ZNF609O15014 1411 aa15.22■□□□□ 0.03
CDH3-208ENST00000569036 DDX60Q8IY21 1712 aaKnown RBP15.21■□□□□ 0.03
CDH3-208ENST00000569036 BTBD11A6QL63 1104 aa15.21■□□□□ 0.03
CDH3-208ENST00000569036 GNAT3A8MTJ3 354 aa15.21■□□□□ 0.03
CDH3-208ENST00000569036 UBE2Q2LH0YL09 131 aa15.21■□□□□ 0.03
CDH3-208ENST00000569036 MORC1Q86VD1 984 aa15.21■□□□□ 0.03
CDH3-208ENST00000569036 TMEM106CQ9BVX2 250 aa15.21■□□□□ 0.03
CDH3-208ENST00000569036 CEMIPQ8WUJ3 1361 aa15.21■□□□□ 0.02
CDH3-208ENST00000569036 LAMB2P55268 1798 aa15.21■□□□□ 0.02
CDH3-208ENST00000569036 SNRPA1P09661 255 aaKnown RBP15.2■□□□□ 0.02
CDH3-208ENST00000569036 SUSD4Q5VX71 490 aa15.2■□□□□ 0.02
CDH3-208ENST00000569036 SP8Q8IXZ3 490 aa15.2■□□□□ 0.02
CDH3-208ENST00000569036 PRO3102Q9H379 93 aa15.2■□□□□ 0.02
CDH3-208ENST00000569036 LRRC37AA6NMS7 1700 aa15.2■□□□□ 0.02
CDH3-208ENST00000569036 LAMB4A4D0S4 1761 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 KDM3BQ7LBC6 1761 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 VCANP13611 3396 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 NTSR2O95665 410 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 GPTP24298 496 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 ANGEL2Q5VTE6 544 aaKnown RBP15.19■□□□□ 0.02
CDH3-208ENST00000569036 ZNF333Q96JL9 665 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 COL25A1Q9BXS0 654 aaPredicted RBP15.19■□□□□ 0.02
CDH3-208ENST00000569036 DBNDD1Q9H9R9 158 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 RTL9Q8NET4 1388 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 ANKRD36CQ5JPF3 1778 aa15.19■□□□□ 0.02
CDH3-208ENST00000569036 SCN9AQ15858 1988 aa15.18■□□□□ 0.02
CDH3-208ENST00000569036 TAF1P21675 1872 aa15.17■□□□□ 0.02
CDH3-208ENST00000569036 ERVV-1B6SEH8 477 aa15.17■□□□□ 0.02
CDH3-208ENST00000569036 SOX1O00570 391 aaPredicted RBP15.17■□□□□ 0.02
CDH3-208ENST00000569036 BBOX1O75936 387 aa15.17■□□□□ 0.02
CDH3-208ENST00000569036 ALDH1A1P00352 501 aa15.17■□□□□ 0.02
CDH3-208ENST00000569036 NLRP3Q96P20 1036 aa15.17■□□□□ 0.02
CDH3-208ENST00000569036 KCNQ5Q9NR82 932 aa15.17■□□□□ 0.02
CDH3-208ENST00000569036 MAP3K15Q6ZN16 1313 aa15.17■□□□□ 0.02
CDH3-208ENST00000569036 SCARF1Q14162 830 aa15.16■□□□□ 0.02
CDH3-208ENST00000569036 CD99L2Q8TCZ2 262 aa15.16■□□□□ 0.02
CDH3-208ENST00000569036 ERO1AQ96HE7 468 aa15.16■□□□□ 0.02
CDH3-208ENST00000569036 GAS2L2Q8NHY3 880 aa15.15■□□□□ 0.02
CDH3-208ENST00000569036 POLR3GLQ9BT43 218 aa15.15■□□□□ 0.02
CDH3-208ENST00000569036 LAMB1P07942 1786 aa15.15■□□□□ 0.02
CDH3-208ENST00000569036 ECE2O60344 883 aa15.14■□□□□ 0.01
CDH3-208ENST00000569036 TTLL12Q14166 644 aaPredicted RBP15.14■□□□□ 0.01
CDH3-208ENST00000569036 SLC4A8Q2Y0W8 1093 aa15.14■□□□□ 0.01
CDH3-208ENST00000569036 ZNF34Q8IZ26 560 aa15.14■□□□□ 0.01
CDH3-208ENST00000569036 NGEFQ8N5V2 710 aa15.14■□□□□ 0.01
CDH3-208ENST00000569036 LRCH3Q96II8 777 aa15.14■□□□□ 0.01
CDH3-208ENST00000569036 EFCC1Q9HA90 598 aa15.14■□□□□ 0.01
CDH3-208ENST00000569036 SCAF8Q9UPN6 1271 aaKnown RBP15.14■□□□□ 0.01
CDH3-208ENST00000569036 SPTBN5Q9NRC6 3674 aaKnown RBP15.14■□□□□ 0.01
CDH3-208ENST00000569036 CAP1Q01518 475 aa15.13■□□□□ 0.01
CDH3-208ENST00000569036 WASHC4Q2M389 1173 aa15.13■□□□□ 0.01
CDH3-208ENST00000569036 PRAMEF18Q5VWM3 479 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms