RNA–Protein interactions for RNA: ENST00000569001.1

BBS4-215, Transcript of Bardet-Biedl syndrome 4, human

TSL 3

Gene BBS4, Length 349 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS4-215	ENST00000569001	ATP2B4	P23634	1241 aa		6.24	□□□□□ -1.41
BBS4-215	ENST00000569001	CHRNA4	P43681	627 aa		6.24	□□□□□ -1.41
BBS4-215	ENST00000569001	TRIP4	Q15650	581 aa	Predicted RBP	6.24	□□□□□ -1.41
BBS4-215	ENST00000569001	C20orf204	Q6ZNR8	217 aa		6.24	□□□□□ -1.41
BBS4-215	ENST00000569001	HFE2	Q6ZVN8	426 aa		6.24	□□□□□ -1.41
BBS4-215	ENST00000569001	ARID3A	Q99856	593 aa		6.24	□□□□□ -1.41
BBS4-215	ENST00000569001	JPH1	Q9HDC5	661 aa	Predicted RBP	6.24	□□□□□ -1.41
BBS4-215	ENST00000569001	C1QTNF9B	B2RNN3	333 aa		6.23	□□□□□ -1.41
BBS4-215	ENST00000569001	SUPT5H	O00267	1087 aa	Known RBP	6.23	□□□□□ -1.41
BBS4-215	ENST00000569001	MSTN	O14793	375 aa		6.23	□□□□□ -1.41
BBS4-215	ENST00000569001	XYLB	O75191	536 aa		6.23	□□□□□ -1.41
BBS4-215	ENST00000569001	PSAPL1	Q6NUJ1	521 aa		6.23	□□□□□ -1.41
BBS4-215	ENST00000569001	CD163	Q86VB7	1156 aa		6.23	□□□□□ -1.41
BBS4-215	ENST00000569001	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	6.23	□□□□□ -1.41
BBS4-215	ENST00000569001	KCNMB2	Q9Y691	235 aa		6.23	□□□□□ -1.41
BBS4-215	ENST00000569001	TMEM88B	A6NKF7	163 aa		6.22	□□□□□ -1.41
BBS4-215	ENST00000569001	NID1	P14543	1247 aa		6.22	□□□□□ -1.41
BBS4-215	ENST00000569001	DHX32	Q7L7V1	743 aa	Known RBP	6.22	□□□□□ -1.41
BBS4-215	ENST00000569001	FAM35A	Q86V20	835 aa		6.22	□□□□□ -1.41
BBS4-215	ENST00000569001	ATCAY	Q86WG3	371 aa		6.22	□□□□□ -1.41
BBS4-215	ENST00000569001	MTMR3	Q13615	1198 aa		6.21	□□□□□ -1.42
BBS4-215	ENST00000569001	GPR152	Q8TDT2	470 aa		6.21	□□□□□ -1.42
BBS4-215	ENST00000569001	NSUN5	Q96P11	429 aa	Known RBP	6.21	□□□□□ -1.42
BBS4-215	ENST00000569001	NOP53	Q9NZM5	478 aa	Known RBP	6.21	□□□□□ -1.42
BBS4-215	ENST00000569001		J3QW42	95 aa		6.2	□□□□□ -1.42
BBS4-215	ENST00000569001	MMP20	O60882	483 aa		6.2	□□□□□ -1.42
BBS4-215	ENST00000569001	LILRB5	O75023	590 aa		6.2	□□□□□ -1.42
BBS4-215	ENST00000569001	BRD2	P25440	801 aa	Known RBP	6.2	□□□□□ -1.42
BBS4-215	ENST00000569001	ZAP70	P43403	619 aa		6.2	□□□□□ -1.42
BBS4-215	ENST00000569001	SUZ12	Q15022	739 aa	Known RBP	6.2	□□□□□ -1.42
BBS4-215	ENST00000569001	GRIK4	Q16099	956 aa		6.2	□□□□□ -1.42
BBS4-215	ENST00000569001	PERM1	Q5SV97	790 aa		6.2	□□□□□ -1.42
BBS4-215	ENST00000569001	PIK3R2	O00459	728 aa		6.19	□□□□□ -1.42
BBS4-215	ENST00000569001	PTCD1	O75127	700 aa	Known RBP	6.19	□□□□□ -1.42
BBS4-215	ENST00000569001	IGHA1	P01876	353 aa		6.19	□□□□□ -1.42
BBS4-215	ENST00000569001	AFF1	P51825	1210 aa	Known RBP	6.19	□□□□□ -1.42
BBS4-215	ENST00000569001	TRAPPC3L	Q5T215	181 aa		6.19	□□□□□ -1.42
BBS4-215	ENST00000569001	COL26A1	Q96A83	441 aa		6.19	□□□□□ -1.42
BBS4-215	ENST00000569001	LPIN3	Q9BQK8	851 aa		6.19	□□□□□ -1.42
BBS4-215	ENST00000569001	PRDM6	Q9NQX0	595 aa		6.19	□□□□□ -1.42
BBS4-215	ENST00000569001	UBAP1L	F5GYI3	381 aa		6.18	□□□□□ -1.42
BBS4-215	ENST00000569001	RGS9	O75916	674 aa	Predicted RBP	6.18	□□□□□ -1.42
BBS4-215	ENST00000569001	MAP3K6	O95382	1288 aa		6.18	□□□□□ -1.42
BBS4-215	ENST00000569001	FURIN	P09958	794 aa		6.18	□□□□□ -1.42
BBS4-215	ENST00000569001	EIF2AK2	P19525	551 aa	Known RBP	6.18	□□□□□ -1.42
BBS4-215	ENST00000569001	DMRTC2	Q8IXT2	367 aa	Predicted RBP	6.18	□□□□□ -1.42
BBS4-215	ENST00000569001	TRPM4	Q8TD43	1214 aa		6.18	□□□□□ -1.42
BBS4-215	ENST00000569001	STIM2	Q9P246	746 aa		6.18	□□□□□ -1.42
BBS4-215	ENST00000569001	SPATA31C1	P0DKV0	1188 aa		6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	BAG6	P46379	1132 aa		6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	GPLD1	P80108	840 aa		6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	GRIK5	Q16478	980 aa		6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	COL13A1	Q5TAT6	717 aa	Predicted RBP	6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	ELMSAN1	Q6PJG2	1045 aa		6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	SHISA2	Q6UWI4	295 aa		6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	SMG9	Q9H0W8	520 aa	Known RBP	6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	TLR7	Q9NYK1	1049 aa	Known RBP	6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	TIMELESS	Q9UNS1	1208 aa		6.17	□□□□□ -1.42
BBS4-215	ENST00000569001	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	6.17	□□□□□ -1.42
BBS4-215	ENST00000569001		A0A0A0MRY4	1105 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001		A6NHS1	94 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	EGFR	P00533	1210 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	SSFA2	P28290	1259 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	TRIM28	Q13263	835 aa	Known RBP	6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	DOC2B	Q14184	412 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	PRRT3	Q5FWE3	981 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	PHLDB3	Q6NSJ2	640 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	ALYREF	Q86V81	257 aa	Known RBP	6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	GTF3C2	Q8WUA4	911 aa	Predicted RBP	6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	EFCC1	Q9HA90	598 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	ANO2	Q9NQ90	1003 aa		6.16	□□□□□ -1.42
BBS4-215	ENST00000569001	CYP2E1	P05181	493 aa	Predicted RBP	6.15	□□□□□ -1.42
BBS4-215	ENST00000569001	PSAP	P07602	524 aa		6.15	□□□□□ -1.42
BBS4-215	ENST00000569001	MPST	P25325	297 aa		6.15	□□□□□ -1.42
BBS4-215	ENST00000569001	NLRP13	Q86W25	1043 aa		6.15	□□□□□ -1.42
BBS4-215	ENST00000569001	PIK3R5	Q8WYR1	880 aa		6.15	□□□□□ -1.42
BBS4-215	ENST00000569001	NUDT16	Q96DE0	195 aa	Known RBP	6.15	□□□□□ -1.42
BBS4-215	ENST00000569001	LOC102724428	A0A0B4J2F2	783 aa		6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	SPDYE3	A6NKU9	549 aa		6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	PPP1R15A	O75807	674 aa	Predicted RBP	6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	NRL	P54845	237 aa		6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	SIK1	P57059	783 aa		6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	DNM1	Q05193	864 aa	Known RBP	6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	ZNF211	Q13398	564 aa	Predicted RBP	6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	GDF6	Q6KF10	455 aa	Predicted RBP	6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	HELQ	Q8TDG4	1101 aa		6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	EDEM1	Q92611	657 aa		6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	PLD4	Q96BZ4	506 aa		6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	TMEM63C	Q9P1W3	806 aa		6.14	□□□□□ -1.43
BBS4-215	ENST00000569001	APBA3	O96018	575 aa		6.13	□□□□□ -1.43
BBS4-215	ENST00000569001	SELP	P16109	830 aa		6.13	□□□□□ -1.43
BBS4-215	ENST00000569001	ATP11A	P98196	1134 aa		6.13	□□□□□ -1.43
BBS4-215	ENST00000569001	MSL1	Q68DK7	614 aa		6.13	□□□□□ -1.43
BBS4-215	ENST00000569001	ADAMTSL4	Q6UY14	1074 aa		6.13	□□□□□ -1.43
BBS4-215	ENST00000569001	ABTB2	Q8N961	1025 aa		6.13	□□□□□ -1.43
BBS4-215	ENST00000569001	ADAM23	O75077	832 aa		6.12	□□□□□ -1.43
BBS4-215	ENST00000569001	ABL1	P00519	1130 aa		6.12	□□□□□ -1.43
BBS4-215	ENST00000569001	ACPP	P15309	386 aa		6.12	□□□□□ -1.43
BBS4-215	ENST00000569001	GATA4	P43694	442 aa		6.12	□□□□□ -1.43
BBS4-215	ENST00000569001	EIF1AX	P47813	144 aa	Known RBP	6.12	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms