RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ATXN7O15265 892 aaPredicted RBP7.85□□□□□ -1.15
LINC00560-201ENST00000564593 CELA2BP08218 269 aaPredicted RBP7.85□□□□□ -1.15
LINC00560-201ENST00000564593 SPOCK3Q9BQ16 436 aa7.85□□□□□ -1.15
LINC00560-201ENST00000564593 NUCKS1Q9H1E3 243 aaKnown RBP7.85□□□□□ -1.15
LINC00560-201ENST00000564593 KCNMB2Q9Y691 235 aa7.85□□□□□ -1.15
LINC00560-201ENST00000564593 NEFLP07196 543 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 TRIP4Q15650 581 aaPredicted RBP7.84□□□□□ -1.15
LINC00560-201ENST00000564593 ZNF438Q7Z4V0 828 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 ENAMQ9NRM1 1142 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 PCDHGC4Q9Y5F7 938 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 PHF20L1A8MW92 1017 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 XYLBO75191 536 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 LDHBP07195 334 aaKnown RBP7.84□□□□□ -1.15
LINC00560-201ENST00000564593 THBS1P07996 1170 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 GRNP28799 593 aaKnown RBP7.84□□□□□ -1.15
LINC00560-201ENST00000564593 DBN1Q16643 649 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 TRIM22Q8IYM9 498 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 MRRFQ96E11 262 aaKnown RBP7.84□□□□□ -1.15
LINC00560-201ENST00000564593 DCAF5Q96JK2 942 aa7.84□□□□□ -1.15
LINC00560-201ENST00000564593 PNMA6FA0A0J9YX94 578 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 KHNYNO15037 678 aaKnown RBP7.83□□□□□ -1.16
LINC00560-201ENST00000564593 FAM157BP0CG42 384 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 FGD1P98174 961 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 ATP2B2Q01814 1243 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 ORC1Q13415 861 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 PDE12Q6L8Q7 609 aaKnown RBP7.83□□□□□ -1.16
LINC00560-201ENST00000564593 XKR5Q6UX68 686 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 KRTAP4-8Q9BYQ9 185 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 BCL11AQ9H165 835 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 CUEDC1Q9NWM3 386 aaPredicted RBP7.83□□□□□ -1.16
LINC00560-201ENST00000564593 KCNH4Q9UQ05 1017 aa7.83□□□□□ -1.16
LINC00560-201ENST00000564593 DCDC2BA2VCK2 349 aa7.82□□□□□ -1.16
LINC00560-201ENST00000564593 ITGB2P05107 769 aa7.82□□□□□ -1.16
LINC00560-201ENST00000564593 SFSWAPQ12872 951 aaKnown RBP7.82□□□□□ -1.16
LINC00560-201ENST00000564593 ENOX2Q16206 610 aaKnown RBP7.82□□□□□ -1.16
LINC00560-201ENST00000564593 CSRNP1Q96S65 589 aa7.82□□□□□ -1.16
LINC00560-201ENST00000564593 ELP3Q9H9T3 547 aa7.82□□□□□ -1.16
LINC00560-201ENST00000564593 WWC3Q9ULE0 1092 aa7.82□□□□□ -1.16
LINC00560-201ENST00000564593 EIF1AYO14602 144 aaKnown RBP7.81□□□□□ -1.16
LINC00560-201ENST00000564593 EFSO43281 561 aa7.81□□□□□ -1.16
LINC00560-201ENST00000564593 TNFRSF21O75509 655 aa7.81□□□□□ -1.16
LINC00560-201ENST00000564593 KCNQ4P56696 695 aa7.81□□□□□ -1.16
LINC00560-201ENST00000564593 GAS6Q14393 721 aa7.81□□□□□ -1.16
LINC00560-201ENST00000564593 GMCL1Q96IK5 515 aa7.81□□□□□ -1.16
LINC00560-201ENST00000564593 C11orf16Q9NQ32 467 aa7.81□□□□□ -1.16
LINC00560-201ENST00000564593 KIAA1522Q9P206 1035 aaPredicted RBP7.81□□□□□ -1.16
LINC00560-201ENST00000564593 BNIP3LO60238 219 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 PRPF40AO75400 957 aaKnown RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 EGFRP00533 1210 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 PROCP04070 461 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 MAPTP10636 758 aaKnown RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 TNP2Q05952 138 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 UBAP2LQ14157 1087 aaKnown RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 ALG1LQ6GMV1 187 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 SETDB2Q96T68 719 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 DNAJC25Q9H1X3 360 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 TMEM63CQ9P1W3 806 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 FOXD3Q9UJU5 478 aaPredicted RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 CPNE3O75131 537 aaKnown RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 XPCQ01831 940 aaPredicted RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 SNX29Q8TEQ0 813 aa7.8□□□□□ -1.16
LINC00560-201ENST00000564593 GTPBP3Q969Y2 492 aaKnown RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 ZNF837Q96EG3 531 aaPredicted RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 DUSP9Q99956 384 aaKnown RBP7.8□□□□□ -1.16
LINC00560-201ENST00000564593 CNTNAP5Q8WYK1 1306 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 PHACTR2O75167 634 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 SASH3O75995 380 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 LAMC2Q13753 1193 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 NLRP13Q86W25 1043 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 BEND7Q8N7W2 519 aaPredicted RBP7.79□□□□□ -1.16
LINC00560-201ENST00000564593 ABHD17AQ96GS6 310 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 STRN4Q9NRL3 753 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 NDFIP2Q9NV92 336 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 MARK1Q9P0L2 795 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 PARP2Q9UGN5 583 aa7.79□□□□□ -1.16
LINC00560-201ENST00000564593 CCINQ13939 588 aa7.78□□□□□ -1.16
LINC00560-201ENST00000564593 TTC39BQ5VTQ0 682 aaPredicted RBP7.78□□□□□ -1.16
LINC00560-201ENST00000564593 KRT25Q7Z3Z0 450 aa7.78□□□□□ -1.16
LINC00560-201ENST00000564593 GSX2Q9BZM3 304 aa7.78□□□□□ -1.16
LINC00560-201ENST00000564593 ZFYVE28Q9HCC9 887 aa7.78□□□□□ -1.16
LINC00560-201ENST00000564593 ABI2Q9NYB9 513 aaPredicted RBP7.78□□□□□ -1.16
LINC00560-201ENST00000564593 TARSP26639 723 aaKnown RBP7.77□□□□□ -1.17
LINC00560-201ENST00000564593 USPL1Q5W0Q7 1092 aa7.77□□□□□ -1.17
LINC00560-201ENST00000564593 FOXR1Q6PIV2 292 aa7.77□□□□□ -1.17
LINC00560-201ENST00000564593 PODNQ7Z5L7 613 aa7.77□□□□□ -1.17
LINC00560-201ENST00000564593 GALNT6Q8NCL4 622 aa7.77□□□□□ -1.17
LINC00560-201ENST00000564593 FBF1Q8TES7 1133 aa7.77□□□□□ -1.17
LINC00560-201ENST00000564593 PNMA5Q96PV4 448 aa7.77□□□□□ -1.17
LINC00560-201ENST00000564593 ATXN7L1Q9ULK2 861 aaPredicted RBP7.77□□□□□ -1.17
LINC00560-201ENST00000564593 CD33P20138 364 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 GRIN2CQ14957 1233 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 C1orf127Q8N9H9 656 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 FAM161BQ96MY7 647 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 RNF19AQ9NV58 838 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 CNTN3Q9P232 1028 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 PHF24Q9UPV7 400 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 K7ELQ4 463 aaPredicted RBP7.76□□□□□ -1.17
LINC00560-201ENST00000564593 VAMP1P23763 118 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 SPEM2Q0P670 501 aa7.76□□□□□ -1.17
LINC00560-201ENST00000564593 PSMD2Q13200 908 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms