RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 KLRG2A4D1S0 409 aaPredicted RBP25.78■■□□□ 1.72
CLN3-212ENST00000564574 CCDC152Q4G0S7 254 aa25.78■■□□□ 1.72
CLN3-212ENST00000564574 TTLL11Q8NHH1 800 aa25.78■■□□□ 1.72
CLN3-212ENST00000564574 ATP8B2P98198 1209 aa25.77■■□□□ 1.72
CLN3-212ENST00000564574 LMBR1LQ6UX01 489 aa25.77■■□□□ 1.72
CLN3-212ENST00000564574 RTL9Q8NET4 1388 aa25.77■■□□□ 1.72
CLN3-212ENST00000564574 CRY2Q49AN0 593 aa25.76■■□□□ 1.71
CLN3-212ENST00000564574 CEP85Q6P2H3 762 aa25.76■■□□□ 1.71
CLN3-212ENST00000564574 DLEC1Q9Y238 1755 aa25.75■■□□□ 1.71
CLN3-212ENST00000564574 COL11A2P13942 1736 aaPredicted RBP25.75■■□□□ 1.71
CLN3-212ENST00000564574 C3orf67Q6ZVT6 689 aa25.74■■□□□ 1.71
CLN3-212ENST00000564574 PPP1R1BQ9UD71 204 aaPredicted RBP25.74■■□□□ 1.71
CLN3-212ENST00000564574 CHMP3Q9Y3E7 222 aa25.73■■□□□ 1.71
CLN3-212ENST00000564574 CD2APQ9Y5K6 639 aa25.73■■□□□ 1.71
CLN3-212ENST00000564574 KIAA1551Q9HCM1 1747 aa25.72■■□□□ 1.71
CLN3-212ENST00000564574 SRGAP3O43295 1099 aa25.72■■□□□ 1.71
CLN3-212ENST00000564574 HMMRO75330 724 aa25.72■■□□□ 1.71
CLN3-212ENST00000564574 CCDC57Q2TAC2 916 aa25.72■■□□□ 1.71
CLN3-212ENST00000564574 RPGRQ92834 1020 aaKnown RBP25.72■■□□□ 1.71
CLN3-212ENST00000564574 PCDHB15Q9Y5E8 787 aa25.72■■□□□ 1.71
CLN3-212ENST00000564574 HOXA10P31260 410 aaPredicted RBP25.71■■□□□ 1.71
CLN3-212ENST00000564574 TGFB2P61812 414 aa25.71■■□□□ 1.71
CLN3-212ENST00000564574 IFIT5Q13325 482 aaKnown RBP25.71■■□□□ 1.71
CLN3-212ENST00000564574 FAM161AQ3B820 660 aa25.71■■□□□ 1.71
CLN3-212ENST00000564574 SSH3Q8TE77 659 aa25.71■■□□□ 1.71
CLN3-212ENST00000564574 GREM2Q9H772 168 aa25.71■■□□□ 1.71
CLN3-212ENST00000564574 ANKRD18BA2A2Z9 1011 aa25.7■■□□□ 1.7
CLN3-212ENST00000564574 H0YIN7 160 aa25.7■■□□□ 1.7
CLN3-212ENST00000564574 SRGNP10124 158 aa25.7■■□□□ 1.7
CLN3-212ENST00000564574 NPR1P16066 1061 aa25.7■■□□□ 1.7
CLN3-212ENST00000564574 ITGA6P23229 1130 aa25.7■■□□□ 1.7
CLN3-212ENST00000564574 POLA2Q14181 598 aa25.7■■□□□ 1.7
CLN3-212ENST00000564574 DDX46Q7L014 1031 aaKnown RBP25.7■■□□□ 1.7
CLN3-212ENST00000564574 C2CD5Q86YS7 1000 aa25.7■■□□□ 1.7
CLN3-212ENST00000564574 RBM17Q96I25 401 aaKnown RBP25.7■■□□□ 1.7
CLN3-212ENST00000564574 PNMA6EA0A0J9YXQ4 647 aa25.69■■□□□ 1.7
CLN3-212ENST00000564574 MASTLQ96GX5 879 aa25.69■■□□□ 1.7
CLN3-212ENST00000564574 CCDC85AQ96PX6 553 aaPredicted RBP25.69■■□□□ 1.7
CLN3-212ENST00000564574 CDC5LQ99459 802 aaKnown RBP25.69■■□□□ 1.7
CLN3-212ENST00000564574 STYK1Q6J9G0 422 aa25.68■■□□□ 1.7
CLN3-212ENST00000564574 CRAMP1Q96RY5 1269 aa25.68■■□□□ 1.7
CLN3-212ENST00000564574 TAF1P21675 1872 aa25.68■■□□□ 1.7
CLN3-212ENST00000564574 SPEF2Q9C093 1822 aa25.67■■□□□ 1.7
CLN3-212ENST00000564574 RFX5P48382 616 aaPredicted RBP25.67■■□□□ 1.7
CLN3-212ENST00000564574 SIRT2Q8IXJ6 389 aa25.67■■□□□ 1.7
CLN3-212ENST00000564574 ALDH1B1P30837 517 aa25.66■■□□□ 1.7
CLN3-212ENST00000564574 HDAC1Q13547 482 aaPredicted RBP25.66■■□□□ 1.7
CLN3-212ENST00000564574 COPRSQ9NQ92 184 aa25.66■■□□□ 1.7
CLN3-212ENST00000564574 SEC31BQ9NQW1 1179 aa25.66■■□□□ 1.7
CLN3-212ENST00000564574 CACNA1SQ13698 1873 aa25.66■■□□□ 1.7
CLN3-212ENST00000564574 GRAPQ13588 217 aa25.65■■□□□ 1.7
CLN3-212ENST00000564574 TAF7LQ5H9L4 462 aa25.65■■□□□ 1.7
CLN3-212ENST00000564574 GRAPLQ8TC17 118 aaPredicted RBP25.65■■□□□ 1.7
CLN3-212ENST00000564574 RWDD1Q9H446 243 aaPredicted RBP25.65■■□□□ 1.7
CLN3-212ENST00000564574 BRCA1P38398 1863 aaKnown RBP25.65■■□□□ 1.7
CLN3-212ENST00000564574 IGHMBP2P38935 993 aaKnown RBP25.64■■□□□ 1.7
CLN3-212ENST00000564574 PTPN12Q05209 780 aaKnown RBP25.64■■□□□ 1.7
CLN3-212ENST00000564574 CNKSR1Q969H4 720 aa25.64■■□□□ 1.7
CLN3-212ENST00000564574 FBXO3Q9UK99 471 aa25.64■■□□□ 1.7
CLN3-212ENST00000564574 CHRNA5P30532 468 aa25.63■■□□□ 1.69
CLN3-212ENST00000564574 ANKRD18AQ8IVF6 992 aa25.63■■□□□ 1.69
CLN3-212ENST00000564574 KLHL34Q8N239 644 aa25.63■■□□□ 1.69
CLN3-212ENST00000564574 DPEP1P16444 411 aa25.62■■□□□ 1.69
CLN3-212ENST00000564574 RPS8P62241 208 aaKnown RBP25.62■■□□□ 1.69
CLN3-212ENST00000564574 TMC4Q7Z404 712 aa25.62■■□□□ 1.69
CLN3-212ENST00000564574 ZNF622Q969S3 477 aaKnown RBP eCLIP25.62■■□□□ 1.69
CLN3-212ENST00000564574 PPP4R2Q9NY27 417 aa25.62■■□□□ 1.69
CLN3-212ENST00000564574 BBOX1O75936 387 aa25.61■■□□□ 1.69
CLN3-212ENST00000564574 CELF1Q92879 486 aaKnown RBP25.61■■□□□ 1.69
CLN3-212ENST00000564574 NOP58Q9Y2X3 529 aaKnown RBP25.61■■□□□ 1.69
CLN3-212ENST00000564574 COL4A1P02462 1669 aa25.61■■□□□ 1.69
CLN3-212ENST00000564574 HSP90AB4PQ58FF6 505 aa25.6■■□□□ 1.69
CLN3-212ENST00000564574 ZNF594Q96JF6 807 aaPredicted RBP25.6■■□□□ 1.69
CLN3-212ENST00000564574 MPHOSPH8Q99549 860 aa25.6■■□□□ 1.69
CLN3-212ENST00000564574 A0A0G2JLW4 131 aa25.59■■□□□ 1.69
CLN3-212ENST00000564574 CIAO1O76071 339 aa25.59■■□□□ 1.69
CLN3-212ENST00000564574 KCNA3P22001 575 aa25.59■■□□□ 1.69
CLN3-212ENST00000564574 LDHAL6AQ6ZMR3 332 aa25.59■■□□□ 1.69
CLN3-212ENST00000564574 KLHDC4Q8TBB5 520 aa25.59■■□□□ 1.69
CLN3-212ENST00000564574 FHDC1Q9C0D6 1143 aaPredicted RBP25.59■■□□□ 1.69
CLN3-212ENST00000564574 DCTPP1Q9H773 170 aa25.59■■□□□ 1.69
CLN3-212ENST00000564574 BSDC1Q9NW68 430 aaPredicted RBP25.59■■□□□ 1.69
CLN3-212ENST00000564574 PA2G4Q9UQ80 394 aaKnown RBP25.59■■□□□ 1.69
CLN3-212ENST00000564574 LRRC37AA6NMS7 1700 aa25.59■■□□□ 1.69
CLN3-212ENST00000564574 SLX4Q8IY92 1834 aa25.58■■□□□ 1.69
CLN3-212ENST00000564574 EYA2O00167 538 aa25.58■■□□□ 1.69
CLN3-212ENST00000564574 SURF6O75683 361 aaKnown RBP25.58■■□□□ 1.69
CLN3-212ENST00000564574 G3BP1Q13283 466 aaKnown RBP eCLIP25.58■■□□□ 1.69
CLN3-212ENST00000564574 PIM2Q9P1W9 311 aa25.58■■□□□ 1.69
CLN3-212ENST00000564574 A0A1B0GUL6 1792 aa25.57■■□□□ 1.68
CLN3-212ENST00000564574 TTLL6Q8N841 843 aa25.57■■□□□ 1.68
CLN3-212ENST00000564574 GCC1Q96CN9 775 aa25.57■■□□□ 1.68
CLN3-212ENST00000564574 CCDC136Q96JN2 1154 aa25.57■■□□□ 1.68
CLN3-212ENST00000564574 CNNM1Q9NRU3 951 aa25.57■■□□□ 1.68
CLN3-212ENST00000564574 PPEF1O14829 653 aaPredicted RBP25.56■■□□□ 1.68
CLN3-212ENST00000564574 IGHDP01880 384 aa25.56■■□□□ 1.68
CLN3-212ENST00000564574 IL15P40933 162 aaPredicted RBP25.56■■□□□ 1.68
CLN3-212ENST00000564574 RAB11FIP3O75154 756 aa25.55■■□□□ 1.68
CLN3-212ENST00000564574 ERC1Q8IUD2 1116 aa25.55■■□□□ 1.68
CLN3-212ENST00000564574 SIL1Q9H173 461 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms