RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 PLA2G4DQ86XP0 818 aa16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 TDRD7Q8NHU6 1098 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-202ENST00000561976 JAK2O60674 1132 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 C1orf141Q5JVX7 400 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 PGBD1Q96JS3 809 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 HMG20BQ9P0W2 317 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 TPD52L1Q16890 204 aaPredicted RBP16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 LINS1Q8NG48 757 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 LRRC59Q96AG4 307 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 DDX11Q96FC9 970 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 SETD1BQ9UPS6 1966 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 PRAMEF22A3QJZ6 481 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 GOLGA6L19H0YKK7 550 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 GIGYF1O75420 1035 aaPredicted RBP16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 KLHDC4Q8TBB5 520 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 BRF1Q92994 677 aa16.49■□□□□ 0.23
VPS9D1-202ENST00000561976 NPHP4O75161 1426 aaPredicted RBP16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 SMTNL1A8MU46 457 aa16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 CEBPZQ03701 1054 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 RBM43Q6ZSC3 357 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 EDC3Q96F86 508 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 ALDH8A1Q9H2A2 487 aaPredicted RBP16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 SNRKQ9NRH2 765 aa16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 DDX58O95786 925 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 KAZALD1Q96I82 304 aa16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 GTPBP4Q9BZE4 634 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-202ENST00000561976 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 RNMTO43148 476 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 CHD2O14647 1828 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 FGD1P98174 961 aa16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 NCBP1Q09161 790 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 KRT32Q14532 448 aa16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 CACTINQ8WUQ7 758 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 ZNF592Q92610 1267 aa16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 GTF3C6Q969F1 213 aa16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 NEK1Q96PY6 1258 aa16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 MED23Q9ULK4 1368 aa16.47■□□□□ 0.23
VPS9D1-202ENST00000561976 TAF5LO75529 589 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 CCDC112Q8NEF3 446 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 CFAP45Q9UL16 551 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 MED1Q15648 1581 aaPredicted RBP16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 ANKARQ7Z5J8 1434 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 ADGRL3Q9HAR2 1447 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 KDM3BQ7LBC6 1761 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 KCNA6P17658 529 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 RESTQ13127 1097 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 Q6ZUG5 572 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 RIC3Q7Z5B4 369 aa16.46■□□□□ 0.23
VPS9D1-202ENST00000561976 FOSBP53539 338 aa16.45■□□□□ 0.22
VPS9D1-202ENST00000561976 CCDC144BQ3MJ40 725 aa16.45■□□□□ 0.22
VPS9D1-202ENST00000561976 CCDC144CPQ8IYA2 1237 aa16.45■□□□□ 0.22
VPS9D1-202ENST00000561976 PAXBP1Q9Y5B6 917 aa16.45■□□□□ 0.22
VPS9D1-202ENST00000561976 TSGA10IPQ3SY00 556 aa16.45■□□□□ 0.22
VPS9D1-202ENST00000561976 BCL11BQ9C0K0 894 aaPredicted RBP16.45■□□□□ 0.22
VPS9D1-202ENST00000561976 CAVIN2O95810 425 aa16.44■□□□□ 0.22
VPS9D1-202ENST00000561976 ZSCAN16Q9H4T2 348 aaPredicted RBP16.44■□□□□ 0.22
VPS9D1-202ENST00000561976 PHF8Q9UPP1 1060 aa16.44■□□□□ 0.22
VPS9D1-202ENST00000561976 MARF1Q9Y4F3 1742 aaKnown RBP16.44■□□□□ 0.22
VPS9D1-202ENST00000561976 AMOTQ4VCS5 1084 aa16.44■□□□□ 0.22
VPS9D1-202ENST00000561976 LRRC2Q9BYS8 371 aa16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 BECN2A8MW95 431 aa16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 NEXNQ0ZGT2 675 aa16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 CCDC129Q6ZRS4 1044 aa16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 FEZ1Q99689 392 aa16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 NDUFB9Q9Y6M9 179 aa16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 NAA30Q147X3 362 aaPredicted RBP16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 CEP135Q66GS9 1140 aa16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 DNAJC2Q99543 621 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 DDX21Q9NR30 783 aaKnown RBP eCLIP16.43■□□□□ 0.22
VPS9D1-202ENST00000561976 UTYO14607 1347 aa16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 CDC25BP30305 580 aa16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 C11orf57Q6ZUT1 292 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 CCAR1Q8IX12 1150 aaKnown RBP16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 LTN1O94822 1766 aa16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 MYL6BP14649 208 aa16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 SYCP1Q15431 976 aa16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 USPL1Q5W0Q7 1092 aa16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 LRRC8AQ8IWT6 810 aa16.42■□□□□ 0.22
VPS9D1-202ENST00000561976 IGSF3O75054 1194 aa16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 IGKV5-2P06315 115 aa16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 ARID5BQ14865 1188 aa16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 IQCB1Q15051 598 aa16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 STX1AQ16623 288 aa16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 CCDC73Q6ZRK6 1079 aa16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 OGFRQ9NZT2 677 aa16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 U3KPZ7 1027 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 PSME1Q06323 249 aa16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 SEC62Q99442 399 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 CGNQ9P2M7 1197 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-202ENST00000561976 CTAGE5O15320 804 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 CHGBP05060 677 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 SCRN1Q12765 414 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 FILIP1Q7Z7B0 1213 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 KCNH5Q8NCM2 988 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 FTOQ9C0B1 505 aaKnown RBP eCLIP16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 NAP1L2Q9ULW6 460 aaPredicted RBP16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 SLIT1O75093 1534 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 JCADQ9P266 1359 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 CYP21A2P08686 494 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms