RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 BCL2L13Q9BXK5 485 aa12.61□□□□□ -0.39
HERC1-209ENST00000560519 TRAF5O00463 557 aa12.6□□□□□ -0.39
HERC1-209ENST00000560519 EIF2S2P20042 333 aaKnown RBP12.6□□□□□ -0.39
HERC1-209ENST00000560519 GMPSP49915 693 aaPredicted RBP12.6□□□□□ -0.39
HERC1-209ENST00000560519 BRPF1P55201 1214 aaPredicted RBP12.6□□□□□ -0.39
HERC1-209ENST00000560519 CXCL9Q07325 125 aa12.6□□□□□ -0.39
HERC1-209ENST00000560519 GRAPQ13588 217 aa12.6□□□□□ -0.39
HERC1-209ENST00000560519 CST9Q5W186 159 aa12.6□□□□□ -0.39
HERC1-209ENST00000560519 C3orf67Q6ZVT6 689 aa12.6□□□□□ -0.39
HERC1-209ENST00000560519 LRP10Q7Z4F1 713 aa12.6□□□□□ -0.39
HERC1-209ENST00000560519 SAPCD2Q86UD0 394 aa12.6□□□□□ -0.39
HERC1-209ENST00000560519 GRAPLQ8TC17 118 aaPredicted RBP12.6□□□□□ -0.39
HERC1-209ENST00000560519 CELF2O95319 508 aaKnown RBP12.59□□□□□ -0.39
HERC1-209ENST00000560519 CDC37L1Q7L3B6 337 aa12.59□□□□□ -0.39
HERC1-209ENST00000560519 NLRP10Q86W26 655 aa12.59□□□□□ -0.39
HERC1-209ENST00000560519 AKAP11Q9UKA4 1901 aa12.58□□□□□ -0.39
HERC1-209ENST00000560519 RIPK4P57078 832 aa12.58□□□□□ -0.4
HERC1-209ENST00000560519 PDIA6Q15084 440 aa12.58□□□□□ -0.4
HERC1-209ENST00000560519 FAM161AQ3B820 660 aa12.58□□□□□ -0.4
HERC1-209ENST00000560519 PGAP2Q9UHJ9 254 aa12.58□□□□□ -0.4
HERC1-209ENST00000560519 TRMT112Q9UI30 125 aaKnown RBP12.58□□□□□ -0.4
HERC1-209ENST00000560519 H7C1D1 291 aa12.57□□□□□ -0.4
HERC1-209ENST00000560519 FMR1Q06787 632 aaKnown RBP eCLIP12.57□□□□□ -0.4
HERC1-209ENST00000560519 NOGQ13253 232 aa12.57□□□□□ -0.4
HERC1-209ENST00000560519 TCIRG1Q13488 830 aa12.57□□□□□ -0.4
HERC1-209ENST00000560519 COPS6Q7L5N1 327 aa12.57□□□□□ -0.4
HERC1-209ENST00000560519 GLIS2Q9BZE0 524 aaPredicted RBP12.57□□□□□ -0.4
HERC1-209ENST00000560519 ZNF408Q9H9D4 720 aa12.57□□□□□ -0.4
HERC1-209ENST00000560519 MYH3P11055 1940 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 CCDC85CA6NKD9 419 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 RAD17O75943 681 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 HOXB7P09629 217 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 MLLT1Q03111 559 aaPredicted RBP12.56□□□□□ -0.4
HERC1-209ENST00000560519 AIMP1Q12904 312 aaKnown RBP12.56□□□□□ -0.4
HERC1-209ENST00000560519 PROSER3Q2NL68 480 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 SLC51AQ86UW1 340 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 XAGE3Q8WTP9 111 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 DPF2Q92785 391 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 EYA3Q99504 573 aa12.56□□□□□ -0.4
HERC1-209ENST00000560519 SPEF2Q9C093 1822 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 ZNF609O15014 1411 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 AOC2O75106 756 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 ANXA1P04083 346 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 HCLS1P14317 486 aaPredicted RBP12.55□□□□□ -0.4
HERC1-209ENST00000560519 HSP90B1P14625 803 aaKnown RBP12.55□□□□□ -0.4
HERC1-209ENST00000560519 RPS12P25398 132 aaKnown RBP12.55□□□□□ -0.4
HERC1-209ENST00000560519 TMPOP42166 694 aaKnown RBP12.55□□□□□ -0.4
HERC1-209ENST00000560519 RALBP1Q15311 655 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 WASHC4Q2M389 1173 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 MICALL2Q8IY33 904 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 PLBD2Q8NHP8 589 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 CNOT7Q9UIV1 285 aaKnown RBP12.55□□□□□ -0.4
HERC1-209ENST00000560519 PAPPA2Q9BXP8 1791 aa12.55□□□□□ -0.4
HERC1-209ENST00000560519 HDGFL1Q5TGJ6 251 aa12.54□□□□□ -0.4
HERC1-209ENST00000560519 TRPM4Q8TD43 1214 aa12.54□□□□□ -0.4
HERC1-209ENST00000560519 DBF4Q9UBU7 674 aaPredicted RBP12.54□□□□□ -0.4
HERC1-209ENST00000560519 CASP8AP2Q9UKL3 1982 aa12.53□□□□□ -0.4
HERC1-209ENST00000560519 YDJCA8MPS7 323 aa12.53□□□□□ -0.4
HERC1-209ENST00000560519 HUNKP57058 714 aa12.53□□□□□ -0.4
HERC1-209ENST00000560519 NECTIN2Q92692 538 aa12.53□□□□□ -0.4
HERC1-209ENST00000560519 SAGE1Q9NXZ1 904 aa12.53□□□□□ -0.4
HERC1-209ENST00000560519 CHPF2Q9P2E5 772 aa12.53□□□□□ -0.4
HERC1-209ENST00000560519 TSKSQ9UJT2 592 aa12.53□□□□□ -0.4
HERC1-209ENST00000560519 NSFL1CQ9UNZ2 370 aaKnown RBP12.53□□□□□ -0.4
HERC1-209ENST00000560519 SCN9AQ15858 1988 aa12.52□□□□□ -0.4
HERC1-209ENST00000560519 COL4A1P02462 1669 aa12.52□□□□□ -0.4
HERC1-209ENST00000560519 SLC34A2O95436 690 aa12.52□□□□□ -0.41
HERC1-209ENST00000560519 RGS19P49795 217 aa12.52□□□□□ -0.41
HERC1-209ENST00000560519 SF3B3Q15393 1217 aaKnown RBP12.52□□□□□ -0.41
HERC1-209ENST00000560519 DCPSQ96C86 337 aaKnown RBP12.52□□□□□ -0.41
HERC1-209ENST00000560519 MYBBP1AQ9BQG0 1328 aaKnown RBP12.52□□□□□ -0.41
HERC1-209ENST00000560519 C6orf229H3BNL8 230 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 PSMD14O00487 310 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 ECE2O60344 883 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 ZEB1P37275 1124 aaPredicted RBP12.51□□□□□ -0.41
HERC1-209ENST00000560519 HIRAP54198 1017 aaPredicted RBP12.51□□□□□ -0.41
HERC1-209ENST00000560519 WDR43Q15061 677 aaKnown RBP eCLIP12.51□□□□□ -0.412e-6■■■□□ 15.7
HERC1-209ENST00000560519 ANKRD13DQ6ZTN6 518 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 KRT26Q7Z3Y9 468 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 C2orf69Q8N8R5 385 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 CCDC102AQ96A19 550 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 CFAP44Q96MT7 982 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 ISCA1Q9BUE6 129 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 MCOLN1Q9GZU1 580 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 DBNDD1Q9H9R9 158 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 HYPKQ9NX55 129 aa12.51□□□□□ -0.41
HERC1-209ENST00000560519 ZNF646O15015 1829 aaPredicted RBP12.51□□□□□ -0.41
HERC1-209ENST00000560519 POLR2AP24928 1970 aaKnown RBP12.5□□□□□ -0.41
HERC1-209ENST00000560519 G3V3G9 751 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 CHL1O00533 1208 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 GOLGA2Q08379 1002 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 DGKZQ13574 1117 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 KIF4BQ2VIQ3 1234 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 DCAF8Q5TAQ9 597 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 RGMBQ6NW40 437 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 SULF1Q8IWU6 871 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 RUNDC1Q96C34 613 aa12.5□□□□□ -0.41
HERC1-209ENST00000560519 GBA2Q9HCG7 927 aaPredicted RBP12.5□□□□□ -0.41
HERC1-209ENST00000560519 ZBTB12Q9Y330 459 aaPredicted RBP12.5□□□□□ -0.41
HERC1-209ENST00000560519 LAS1LQ9Y4W2 734 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms