RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 C16orf45Q96MC5 204 aaPredicted RBP13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 FEZ1Q99689 392 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 NRBP1Q9UHY1 535 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 ZHX1Q9UKY1 873 aaPredicted RBP13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 NR1I2O75469 434 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 PLEKHO1Q53GL0 409 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 SUCLG2Q96I99 432 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 DNAJC25Q9H1X3 360 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 CLIP2Q9UDT6 1046 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 PAXBP1Q9Y5B6 917 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 JCADQ9P266 1359 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 SPDYE4A6NLX3 237 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 TNNT1P13805 278 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 U2AF2P26368 475 aaKnown RBP eCLIP13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 CDC25BP30305 580 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 PLPPR3Q6T4P5 718 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 PGBD1Q96JS3 809 aa13.95□□□□□ -0.18
VIPAS39-211ENST00000557658 NCBP1Q09161 790 aaKnown RBP13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 PROSER3Q2NL68 480 aa13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 MPRIPQ6WCQ1 1025 aa13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 GTF3C6Q969F1 213 aa13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 BICC1Q9H694 974 aaKnown RBP13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 UTYO14607 1347 aa13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 DDX58O95786 925 aaKnown RBP13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 ZSCAN16Q9H4T2 348 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 TLR7Q9NYK1 1049 aaKnown RBP13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 CFAP45Q9UL16 551 aa13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 TAF6LQ9Y6J9 622 aa13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 ARHGAP23Q9P227 1491 aa13.94□□□□□ -0.18
VIPAS39-211ENST00000557658 H3BQV1 296 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 RESTQ13127 1097 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 TPD52L1Q16890 204 aaPredicted RBP13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 IFFO2Q5TF58 517 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 KAZALD1Q96I82 304 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 NCAPD2Q15021 1401 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 GOLGA6L19H0YKK7 550 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 TAF5LO75529 589 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 ZNF589Q86UQ0 364 aaPredicted RBP13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 CCDC112Q8NEF3 446 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 CACTINQ8WUQ7 758 aaKnown RBP13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 BRF1Q92994 677 aa13.93□□□□□ -0.18
VIPAS39-211ENST00000557658 RNMTO43148 476 aaKnown RBP13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 JAK2O60674 1132 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 KIF20AO95235 890 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 AMOTQ4VCS5 1084 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 C1orf141Q5JVX7 400 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 USPL1Q5W0Q7 1092 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 SIL1Q9H173 461 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 NEMFO60524 1076 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 SARM1Q6SZW1 724 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 NEK1Q96PY6 1258 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 OGFRQ9NZT2 677 aa13.92□□□□□ -0.18
VIPAS39-211ENST00000557658 RGPD2P0DJD1 1756 aa13.91□□□□□ -0.18
VIPAS39-211ENST00000557658 CTAGE5O15320 804 aa13.91□□□□□ -0.18
VIPAS39-211ENST00000557658 HSP90B1P14625 803 aaKnown RBP13.91□□□□□ -0.18
VIPAS39-211ENST00000557658 CGNQ9P2M7 1197 aaKnown RBP13.91□□□□□ -0.18
VIPAS39-211ENST00000557658 HEG1Q9ULI3 1381 aa13.91□□□□□ -0.18
VIPAS39-211ENST00000557658 OVOS2A0A0G2JMS6 1433 aa13.91□□□□□ -0.18
VIPAS39-211ENST00000557658 NFAT5O94916 1531 aa13.91□□□□□ -0.18
VIPAS39-211ENST00000557658 STX1AQ16623 288 aa13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 CCDC144BQ3MJ40 725 aa13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 CCDC144CPQ8IYA2 1237 aa13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 MRFAP1L1Q96HT8 127 aa13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 IQCB1Q15051 598 aa13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 CEP135Q66GS9 1140 aa13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 Q6ZUG5 572 aa13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 DDX21Q9NR30 783 aaKnown RBP eCLIP13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 U3KPZ7 1027 aaPredicted RBP13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 MRC1P22897 1456 aa13.9□□□□□ -0.18
VIPAS39-211ENST00000557658 MYH15Q9Y2K3 1946 aa13.9□□□□□ -0.19
VIPAS39-211ENST00000557658 LRRC8AQ8IWT6 810 aa13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 PHF8Q9UPP1 1060 aa13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 CEBPAP49715 358 aaPredicted RBP13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 AIMP1Q12904 312 aaKnown RBP13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 RFX7Q2KHR2 1363 aa13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 KCNH5Q8NCM2 988 aa13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 LRRC59Q96AG4 307 aaKnown RBP13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 DDX11Q96FC9 970 aa13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 LLPHQ9BRT6 129 aaKnown RBP13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 CTNNA3Q9UI47 895 aa13.89□□□□□ -0.19
VIPAS39-211ENST00000557658 PRAMEF22A3QJZ6 481 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 KCNA6P17658 529 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 ATP5JP18859 108 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 RBM6P78332 1123 aaKnown RBP13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 RIC3Q7Z5B4 369 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 BECN2A8MW95 431 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 FGD1P98174 961 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 NEXNQ0ZGT2 675 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 CCDC73Q6ZRK6 1079 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 C11orf57Q6ZUT1 292 aaPredicted RBP13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 CCAR1Q8IX12 1150 aaKnown RBP13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 SMARCC2Q8TAQ2 1214 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 KLHDC4Q8TBB5 520 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 EDC3Q96F86 508 aaKnown RBP13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 RCOR1Q9UKL0 485 aa13.88□□□□□ -0.19
VIPAS39-211ENST00000557658 NAA16Q6N069 864 aaPredicted RBP13.87□□□□□ -0.19
VIPAS39-211ENST00000557658 ZNF592Q92610 1267 aa13.87□□□□□ -0.19
VIPAS39-211ENST00000557658 PXDNQ92626 1479 aa13.87□□□□□ -0.19
VIPAS39-211ENST00000557658 IGKV5-2P06315 115 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms