RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GRM8O00222 908 aa19.27■□□□□ 0.68
SHMT2-232ENST00000557487 CDC37L1Q7L3B6 337 aa19.27■□□□□ 0.68
SHMT2-232ENST00000557487 MPNDQ8N594 471 aa19.27■□□□□ 0.68
SHMT2-232ENST00000557487 NECAB1Q8N987 351 aa19.27■□□□□ 0.68
SHMT2-232ENST00000557487 BCL2L12Q9HB09 334 aa19.27■□□□□ 0.68
SHMT2-232ENST00000557487 CDC25BP30305 580 aa19.27■□□□□ 0.67
SHMT2-232ENST00000557487 C17orf53Q8N3J3 647 aaPredicted RBP19.27■□□□□ 0.67
SHMT2-232ENST00000557487 ANKRD7Q92527 254 aa19.27■□□□□ 0.67
SHMT2-232ENST00000557487 LIG1P18858 919 aa19.26■□□□□ 0.67
SHMT2-232ENST00000557487 ZNF530Q6P9A1 599 aaPredicted RBP19.26■□□□□ 0.67
SHMT2-232ENST00000557487 ZSCAN16Q9H4T2 348 aaPredicted RBP19.26■□□□□ 0.67
SHMT2-232ENST00000557487 NBPF6Q5VWK0 638 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 USPL1Q5W0Q7 1092 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 PLA2G4DQ86XP0 818 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 USHBP1Q8N6Y0 703 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 COL22A1Q8NFW1 1626 aaPredicted RBP19.25■□□□□ 0.67
SHMT2-232ENST00000557487 LEO1Q8WVC0 666 aaPredicted RBP19.25■□□□□ 0.67
SHMT2-232ENST00000557487 NBPF4Q96M43 638 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 DACT1Q9NYF0 836 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 TNS3Q68CZ2 1445 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 RNMTO43148 476 aaKnown RBP19.25■□□□□ 0.67
SHMT2-232ENST00000557487 PDCL2Q8N4E4 241 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 SPC24Q8NBT2 197 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 FAM227BQ96M60 508 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 FSD1Q9BTV5 496 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 GTPBP4Q9BZE4 634 aaKnown RBP19.25■□□□□ 0.67
SHMT2-232ENST00000557487 CBX8Q9HC52 389 aa19.25■□□□□ 0.67
SHMT2-232ENST00000557487 RIOK3O14730 519 aaKnown RBP19.24■□□□□ 0.67
SHMT2-232ENST00000557487 SASH1O94885 1247 aa19.24■□□□□ 0.67
SHMT2-232ENST00000557487 ZNF75DP51815 510 aa19.24■□□□□ 0.67
SHMT2-232ENST00000557487 DMTNQ08495 405 aa19.24■□□□□ 0.67
SHMT2-232ENST00000557487 C1orf141Q5JVX7 400 aa19.24■□□□□ 0.67
SHMT2-232ENST00000557487 NUTM2GQ5VZR2 741 aa19.24■□□□□ 0.67
SHMT2-232ENST00000557487 EAF2Q96CJ1 260 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-232ENST00000557487 CFAP45Q9UL16 551 aa19.24■□□□□ 0.67
SHMT2-232ENST00000557487 CTAGE5O15320 804 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 KCNQ3O43525 872 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 NEMFO60524 1076 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 TOB2Q14106 344 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-232ENST00000557487 TPRNQ4KMQ1 711 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 ANO6Q4KMQ2 910 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 TICAM2Q86XR7 235 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 PA2G4Q9UQ80 394 aaKnown RBP19.23■□□□□ 0.67
SHMT2-232ENST00000557487 PAXBP1Q9Y5B6 917 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 LRP6O75581 1613 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 SMTNL1A8MU46 457 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 PTGS1P23219 599 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 FEZ1Q99689 392 aa19.23■□□□□ 0.67
SHMT2-232ENST00000557487 TRPM3Q9HCF6 1732 aaPredicted RBP19.22■□□□□ 0.67
SHMT2-232ENST00000557487 LUZP1Q86V48 1076 aa19.22■□□□□ 0.67
SHMT2-232ENST00000557487 DDX21Q9NR30 783 aaKnown RBP eCLIP19.22■□□□□ 0.67
SHMT2-232ENST00000557487 A0A0D9SFI3 127 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 PPP4R3BQ5MIZ7 849 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 ATL3Q6DD88 541 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 LARP1Q6PKG0 1096 aaKnown RBP19.21■□□□□ 0.67
SHMT2-232ENST00000557487 SARM1Q6SZW1 724 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 FERMT3Q86UX7 667 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 GTF3C6Q969F1 213 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 CHMP4CQ96CF2 233 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 SUCLG2Q96I99 432 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 LLPHQ9BRT6 129 aaKnown RBP19.21■□□□□ 0.67
SHMT2-232ENST00000557487 TRIM5Q9C035 493 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 CCDC186Q7Z3E2 898 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 DRC7Q8IY82 874 aa19.21■□□□□ 0.67
SHMT2-232ENST00000557487 BICC1Q9H694 974 aaKnown RBP19.21■□□□□ 0.67
SHMT2-232ENST00000557487 U3KPZ7 1027 aaPredicted RBP19.21■□□□□ 0.67
SHMT2-232ENST00000557487 ANXA1P04083 346 aa19.2■□□□□ 0.66
SHMT2-232ENST00000557487 ZNF165P49910 485 aa19.2■□□□□ 0.66
SHMT2-232ENST00000557487 CAMK4Q16566 473 aa19.2■□□□□ 0.66
SHMT2-232ENST00000557487 TAF5LO75529 589 aa19.19■□□□□ 0.66
SHMT2-232ENST00000557487 RESTQ13127 1097 aa19.19■□□□□ 0.66
SHMT2-232ENST00000557487 ZSCAN25Q6NSZ9 544 aa19.19■□□□□ 0.66
SHMT2-232ENST00000557487 BICD2Q8TD16 824 aa19.19■□□□□ 0.66
SHMT2-232ENST00000557487 KAZALD1Q96I82 304 aa19.19■□□□□ 0.66
SHMT2-232ENST00000557487 HMGB1P09429 215 aaKnown RBP19.19■□□□□ 0.66
SHMT2-232ENST00000557487 ZSCAN20P17040 1043 aaPredicted RBP19.19■□□□□ 0.66
SHMT2-232ENST00000557487 ATP5JP18859 108 aa19.19■□□□□ 0.66
SHMT2-232ENST00000557487 CWF19L2Q2TBE0 894 aaKnown RBP19.19■□□□□ 0.66
SHMT2-232ENST00000557487 CCDC8Q9H0W5 538 aaPredicted RBP19.19■□□□□ 0.66
SHMT2-232ENST00000557487 NUTM2BA6NNL0 878 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-232ENST00000557487 NUTM2EB1AL46 878 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-232ENST00000557487 NEXNQ0ZGT2 675 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 MPRIPQ6WCQ1 1025 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 NUTM2AQ8IVF1 878 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-232ENST00000557487 CKAP2LQ8IYA6 745 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 TSC1Q92574 1164 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 NEK1Q96PY6 1258 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 BOLA2Q9H3K6 86 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 COL15A1P39059 1388 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 ALS2Q96Q42 1657 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 ADAMTS7Q9UKP4 1686 aa19.18■□□□□ 0.66
SHMT2-232ENST00000557487 ZBTB7CA1YPR0 619 aa19.17■□□□□ 0.66
SHMT2-232ENST00000557487 NAA16Q6N069 864 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-232ENST00000557487 MRFAP1L1Q96HT8 127 aa19.17■□□□□ 0.66
SHMT2-232ENST00000557487 SIPA1L3O60292 1781 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-232ENST00000557487 CAMTA1Q9Y6Y1 1673 aa19.17■□□□□ 0.66
SHMT2-232ENST00000557487 H3BQV1 296 aa19.17■□□□□ 0.66
SHMT2-232ENST00000557487 PROSER3Q2NL68 480 aa19.17■□□□□ 0.66
SHMT2-232ENST00000557487 IFFO2Q5TF58 517 aa19.17■□□□□ 0.66
SHMT2-232ENST00000557487 PGBD1Q96JS3 809 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms