RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 SMC2O95347 1197 aa14.33□□□□□ -0.12
CCDC88C-211ENST00000556726 HSPA2P54652 639 aa14.33□□□□□ -0.12
CCDC88C-211ENST00000556726 CYP2E1P05181 493 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 ZNF165P49910 485 aa14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 CUL4AQ13619 759 aa14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 CCDC186Q7Z3E2 898 aa14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 MTMR6Q9Y217 621 aa14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 PTGS1P23219 599 aa14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 NOLC1Q14978 699 aaKnown RBP eCLIP14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 HSP90AA4PQ58FG1 418 aa14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 VPS53Q5VIR6 699 aa14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 GCKRQ14397 625 aa14.32□□□□□ -0.12
CCDC88C-211ENST00000556726 CCDC158Q5M9N0 1113 aa14.31□□□□□ -0.12
CCDC88C-211ENST00000556726 FTOQ9C0B1 505 aaKnown RBP eCLIP14.31□□□□□ -0.12
CCDC88C-211ENST00000556726 PREX1Q8TCU6 1659 aa14.31□□□□□ -0.12
CCDC88C-211ENST00000556726 CBX1P83916 185 aa14.31□□□□□ -0.12
CCDC88C-211ENST00000556726 TTC6Q86TZ1 520 aa14.31□□□□□ -0.12
CCDC88C-211ENST00000556726 PLEKHG1Q9ULL1 1385 aa14.31□□□□□ -0.12
CCDC88C-211ENST00000556726 FAM177A1Q8N128 213 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 HELBQ8NG08 1087 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 SPDYE4A6NLX3 237 aa14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 TYRO3Q06418 890 aa14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 PIBF1Q8WXW3 757 aa14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 ZBTB9Q96C00 473 aa14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 SCAND2PQ9GZW5 306 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 NEURL1BA8MQ27 555 aa14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 GTF2E1P29083 439 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 TTLL5Q6EMB2 1281 aa14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 TTLL7Q6ZT98 887 aa14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 RGS12O14924 1447 aa14.3□□□□□ -0.12
CCDC88C-211ENST00000556726 TULP1O00294 542 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 FAM89AQ96GI7 184 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 IQSEC3Q9UPP2 1182 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 NCOA3Q9Y6Q9 1424 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 COL9A3Q14050 684 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 TNNI3KQ59H18 835 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 METTL24Q5JXM2 366 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 DBNLQ9UJU6 430 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 FPGT-TNNI3KV9GXZ4 949 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 CEP170BQ9Y4F5 1589 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 IGSF3O75054 1194 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 POLA2Q14181 598 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 KRT32Q14532 448 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 FSIP1Q8NA03 581 aa14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 V9GYY5 206 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-211ENST00000556726 HOMER1Q86YM7 354 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 CCAR2Q8N163 923 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 OVOS2A0A0J9YW53 1432 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 OVOS2Q6IE36 1432 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 PTPRUQ92729 1446 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 RPS6KB1P23443 525 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 MCMDC2Q4G0Z9 681 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 CCAR1Q8IX12 1150 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 CLIP2Q9UDT6 1046 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 ADAMTS13Q76LX8 1427 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 IGKV5-2P06315 115 aa14.28□□□□□ -0.12
CCDC88C-211ENST00000556726 NRDCO43847 1150 aa14.27□□□□□ -0.12
CCDC88C-211ENST00000556726 LRMPQ12912 555 aa14.27□□□□□ -0.12
CCDC88C-211ENST00000556726 CWC25Q9NXE8 425 aaPredicted RBP14.27□□□□□ -0.12
CCDC88C-211ENST00000556726 GOLGA8BA8MQT2 603 aa14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 ARHGEF25Q86VW2 580 aa14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 METTL22Q9BUU2 404 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 ZMYND15Q9H091 742 aa14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 SLC52A2Q9HAB3 445 aa14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 PAG1Q9NWQ8 432 aa14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 CFAP45Q9UL16 551 aa14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 U3KPZ7 1027 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 LRRC24Q50LG9 513 aa14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 MICU3Q86XE3 530 aa14.27□□□□□ -0.13
CCDC88C-211ENST00000556726 IFT172Q9UG01 1749 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 ADCY9O60503 1353 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 NR1I2O75469 434 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 MARCKSP29966 332 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 KIF6Q6ZMV9 814 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 NUP133Q8WUM0 1156 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 ZSWIM6Q9HCJ5 1215 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 PTPDC1A2A3K4 754 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 TRIM29Q14134 588 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 SLC4A8Q2Y0W8 1093 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 LDHAL6AQ6ZMR3 332 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 PDILTQ8N807 584 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 PUS3Q9BZE2 481 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 TMX1Q9H3N1 280 aa14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 GPHNQ9NQX3 736 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-211ENST00000556726 KLF18A0A0U1RQI7 1052 aa14.25□□□□□ -0.13
CCDC88C-211ENST00000556726 A0A1B0GVL5 298 aa14.25□□□□□ -0.13
CCDC88C-211ENST00000556726 FAM200AQ8TCP9 573 aa14.25□□□□□ -0.13
CCDC88C-211ENST00000556726 C8orf76Q96K31 380 aa14.25□□□□□ -0.13
CCDC88C-211ENST00000556726 NRBP1Q9UHY1 535 aa14.25□□□□□ -0.13
CCDC88C-211ENST00000556726 CDC42BPGQ6DT37 1551 aa14.25□□□□□ -0.13
CCDC88C-211ENST00000556726 PES1O00541 588 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 CPLX2Q6PUV4 134 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 PI16Q6UXB8 463 aa14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 LEO1Q8WVC0 666 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 NEURL4Q96JN8 1562 aa14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 AOX1Q06278 1338 aa14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 A0A1B0GUL7 405 aa14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 UBE2Q2Q8WVN8 375 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms