RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 TAOK2Q9UL54 1235 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 CCDC186Q7Z3E2 898 aa11.24□□□□□ -0.61
SYNE2-213ENST00000554805 KLHL34Q8N239 644 aa11.24□□□□□ -0.61
SYNE2-213ENST00000554805 BRF1Q92994 677 aa11.24□□□□□ -0.61
SYNE2-213ENST00000554805 FBXW7Q969H0 707 aa11.24□□□□□ -0.61
SYNE2-213ENST00000554805 UBR1Q8IWV7 1749 aa11.24□□□□□ -0.61
SYNE2-213ENST00000554805 NEK1Q96PY6 1258 aa11.24□□□□□ -0.61
SYNE2-213ENST00000554805 FUCA2Q9BTY2 467 aa11.24□□□□□ -0.61
SYNE2-213ENST00000554805 ATP5J2-PTCD1G3V325 749 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 PTCD1O75127 700 aaKnown RBP11.23□□□□□ -0.61
SYNE2-213ENST00000554805 LEO1Q8WVC0 666 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-213ENST00000554805 XRN1Q8IZH2 1706 aaKnown RBP11.23□□□□□ -0.61
SYNE2-213ENST00000554805 GOLGA6L19H0YKK7 550 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 TFCP2Q12800 502 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 Q6ZUG5 572 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 DDX46Q7L014 1031 aaKnown RBP11.23□□□□□ -0.61
SYNE2-213ENST00000554805 UBE3BQ7Z3V4 1068 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 TTC5Q8N0Z6 440 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 KAZALD1Q96I82 304 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 CBX8Q9HC52 389 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 DDX19AQ9NUU7 478 aaKnown RBP11.23□□□□□ -0.61
SYNE2-213ENST00000554805 MRVI1Q9Y6F6 885 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 ANKARQ7Z5J8 1434 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 NALCNQ8IZF0 1738 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 ATF3P18847 181 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 KRT32Q14532 448 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 EPHA10Q5JZY3 1008 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 USP54Q70EL1 1684 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 TOPAZ1Q8N9V7 1692 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 DNAJC25Q9H1X3 360 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 HMG20BQ9P0W2 317 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 CRYBG1Q9Y4K1 1723 aa11.23□□□□□ -0.61
SYNE2-213ENST00000554805 IGKV5-2P06315 115 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 PDIA4P13667 645 aaKnown RBP11.22□□□□□ -0.61
SYNE2-213ENST00000554805 ZNF165P49910 485 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 KCNB2Q92953 911 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 SEC62Q99442 399 aaKnown RBP11.22□□□□□ -0.61
SYNE2-213ENST00000554805 FAM208AQ9UK61 1670 aaKnown RBP11.22□□□□□ -0.61
SYNE2-213ENST00000554805 NPHP3Q7Z494 1330 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 TOB2Q14106 344 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-213ENST00000554805 KIAA1524Q8TCG1 905 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 PIK3C2AO00443 1686 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 FMN2Q9NZ56 1722 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 NEURL1BA8MQ27 555 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 TAF5LO75529 589 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 CHGBP05060 677 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 GCKRQ14397 625 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 NFATC2IPQ8NCF5 419 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 ZNF592Q92610 1267 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 KCNF1Q9H3M0 494 aa11.22□□□□□ -0.61
SYNE2-213ENST00000554805 BECN2A8MW95 431 aa11.21□□□□□ -0.61
SYNE2-213ENST00000554805 NR1I2O75469 434 aa11.21□□□□□ -0.61
SYNE2-213ENST00000554805 CBX1P83916 185 aa11.21□□□□□ -0.61
SYNE2-213ENST00000554805 GUCY1B3Q02153 619 aa11.21□□□□□ -0.61
SYNE2-213ENST00000554805 ANKRD13DQ6ZTN6 518 aa11.21□□□□□ -0.61
SYNE2-213ENST00000554805 C16orf45Q96MC5 204 aaPredicted RBP11.21□□□□□ -0.61
SYNE2-213ENST00000554805 DBNDD2Q9BQY9 259 aa11.21□□□□□ -0.61
SYNE2-213ENST00000554805 CCT2P78371 535 aaKnown RBP11.21□□□□□ -0.62
SYNE2-213ENST00000554805 LRMPQ12912 555 aa11.21□□□□□ -0.62
SYNE2-213ENST00000554805 ZNF790Q6PG37 636 aa11.21□□□□□ -0.62
SYNE2-213ENST00000554805 NWD1Q149M9 1564 aa11.21□□□□□ -0.62
SYNE2-213ENST00000554805 A0A087WZG4 1122 aa11.21□□□□□ -0.62
SYNE2-213ENST00000554805 RIOK3O14730 519 aaKnown RBP11.21□□□□□ -0.62
SYNE2-213ENST00000554805 ARHGEF25Q86VW2 580 aa11.21□□□□□ -0.62
SYNE2-213ENST00000554805 CLSTN2Q9H4D0 955 aa11.21□□□□□ -0.62
SYNE2-213ENST00000554805 NRBP1Q9UHY1 535 aa11.21□□□□□ -0.62
SYNE2-213ENST00000554805 U3KPZ7 1027 aaPredicted RBP11.21□□□□□ -0.62
SYNE2-213ENST00000554805 RGPD8O14715 1765 aaPredicted RBP11.2□□□□□ -0.62
SYNE2-213ENST00000554805 TNNI3KQ59H18 835 aa11.2□□□□□ -0.62
SYNE2-213ENST00000554805 PPP4R3BQ5MIZ7 849 aa11.2□□□□□ -0.62
SYNE2-213ENST00000554805 SPTLC3Q9NUV7 552 aa11.2□□□□□ -0.62
SYNE2-213ENST00000554805 DBNLQ9UJU6 430 aaKnown RBP11.2□□□□□ -0.62
SYNE2-213ENST00000554805 FPGT-TNNI3KV9GXZ4 949 aa11.2□□□□□ -0.62
SYNE2-213ENST00000554805 TATP17735 454 aaPredicted RBP11.2□□□□□ -0.62
SYNE2-213ENST00000554805 TPD52L1Q16890 204 aaPredicted RBP11.2□□□□□ -0.62
SYNE2-213ENST00000554805 CCDC73Q6ZRK6 1079 aa11.2□□□□□ -0.62
SYNE2-213ENST00000554805 CCDC94Q9BW85 323 aaPredicted RBP11.2□□□□□ -0.62
SYNE2-213ENST00000554805 BCL2L12Q9HB09 334 aa11.2□□□□□ -0.62
SYNE2-213ENST00000554805 CLIP2Q9UDT6 1046 aa11.2□□□□□ -0.62
SYNE2-213ENST00000554805 CFAP45Q9UL16 551 aa11.2□□□□□ -0.62
SYNE2-213ENST00000554805 ZRSR1Q15695 479 aaKnown RBP11.19□□□□□ -0.62
SYNE2-213ENST00000554805 METTL22Q9BUU2 404 aaPredicted RBP11.19□□□□□ -0.62
SYNE2-213ENST00000554805 AXIN2Q9Y2T1 843 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 ELP1O95163 1332 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 GOLIM4O00461 696 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 MCMDC2Q4G0Z9 681 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 PDCL2Q8N4E4 241 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 GTF3C6Q969F1 213 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 USP16Q9Y5T5 823 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 ZNF75DP51815 510 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 CHRNA2Q15822 529 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 ZNF496Q96IT1 587 aaPredicted RBP11.19□□□□□ -0.62
SYNE2-213ENST00000554805 PGBD1Q96JS3 809 aa11.19□□□□□ -0.62
SYNE2-213ENST00000554805 ATP5JP18859 108 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 APOBRQ0VD83 1088 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 KRT28Q7Z3Y7 464 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 CCAR1Q8IX12 1150 aaKnown RBP11.18□□□□□ -0.62
SYNE2-213ENST00000554805 SPDYE4A6NLX3 237 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 KINO60870 393 aaKnown RBP11.18□□□□□ -0.62
SYNE2-213ENST00000554805 ME1P48163 572 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms