RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ERFEQ4G0M1 354 aa11.96□□□□□ -0.49
LIMA1-211ENST00000552338 SMC5Q8IY18 1101 aa11.96□□□□□ -0.49
LIMA1-211ENST00000552338 SYNE4Q8N205 404 aa11.96□□□□□ -0.49
LIMA1-211ENST00000552338 BRIP1Q9BX63 1249 aa11.96□□□□□ -0.49
LIMA1-211ENST00000552338 RWDD1Q9H446 243 aaPredicted RBP11.96□□□□□ -0.49
LIMA1-211ENST00000552338 COPRSQ9NQ92 184 aa11.96□□□□□ -0.49
LIMA1-211ENST00000552338 DLEC1Q9Y238 1755 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 ABCC12Q96J65 1359 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 TNRC6CQ9HCJ0 1690 aaKnown RBP11.95□□□□□ -0.5
LIMA1-211ENST00000552338 SOCS7O14512 581 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 MMP10P09238 476 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 LMBR1LQ6UX01 489 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 BICDL1Q6ZP65 573 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 NUTM1Q86Y26 1132 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 CNBD1Q8NA66 436 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 GCC1Q96CN9 775 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 NLRP3Q96P20 1036 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 C1orf115Q9H7X2 142 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 PARP3Q9Y6F1 533 aa11.95□□□□□ -0.5
LIMA1-211ENST00000552338 LRP5O75197 1615 aa11.94□□□□□ -0.5
LIMA1-211ENST00000552338 IGHDP01880 384 aa11.94□□□□□ -0.5
LIMA1-211ENST00000552338 HOXA10P31260 410 aaPredicted RBP11.94□□□□□ -0.5
LIMA1-211ENST00000552338 ST5P78524 1137 aa11.94□□□□□ -0.5
LIMA1-211ENST00000552338 PTPN12Q05209 780 aaKnown RBP11.94□□□□□ -0.5
LIMA1-211ENST00000552338 R3HDM1Q15032 1099 aaKnown RBP11.94□□□□□ -0.5
LIMA1-211ENST00000552338 SRGAP3O43295 1099 aa11.93□□□□□ -0.5
LIMA1-211ENST00000552338 HCLS1P14317 486 aaPredicted RBP11.93□□□□□ -0.5
LIMA1-211ENST00000552338 CCDC152Q4G0S7 254 aa11.93□□□□□ -0.5
LIMA1-211ENST00000552338 CENPQQ7L2Z9 268 aaPredicted RBP11.93□□□□□ -0.5
LIMA1-211ENST00000552338 JARID2Q92833 1246 aaPredicted RBP11.93□□□□□ -0.5
LIMA1-211ENST00000552338 C10orf71Q711Q0 1435 aa11.93□□□□□ -0.5
LIMA1-211ENST00000552338 KIAA1551Q9HCM1 1747 aa11.92□□□□□ -0.5
LIMA1-211ENST00000552338 RAB11FIP3O75154 756 aa11.92□□□□□ -0.5
LIMA1-211ENST00000552338 CIAO1O76071 339 aa11.92□□□□□ -0.5
LIMA1-211ENST00000552338 GTF2E1P29083 439 aaPredicted RBP11.92□□□□□ -0.5
LIMA1-211ENST00000552338 HSP90AB4PQ58FF6 505 aa11.92□□□□□ -0.5
LIMA1-211ENST00000552338 CCDC136Q96JN2 1154 aa11.92□□□□□ -0.5
LIMA1-211ENST00000552338 TAF1P21675 1872 aa11.91□□□□□ -0.5
LIMA1-211ENST00000552338 BRCA1P38398 1863 aaKnown RBP11.91□□□□□ -0.5
LIMA1-211ENST00000552338 ITGA6P23229 1130 aa11.91□□□□□ -0.5
LIMA1-211ENST00000552338 PDE6BP35913 854 aa11.91□□□□□ -0.5
LIMA1-211ENST00000552338 PTGER2P43116 358 aa11.91□□□□□ -0.5
LIMA1-211ENST00000552338 CCDC57Q2TAC2 916 aa11.91□□□□□ -0.5
LIMA1-211ENST00000552338 RTL5Q5HYW3 569 aaPredicted RBP11.91□□□□□ -0.5
LIMA1-211ENST00000552338 CRAMP1Q96RY5 1269 aa11.91□□□□□ -0.5
LIMA1-211ENST00000552338 GREM2Q9H772 168 aa11.91□□□□□ -0.5
LIMA1-211ENST00000552338 A0A1B0GUL6 1792 aa11.91□□□□□ -0.5
LIMA1-211ENST00000552338 ANKRD18BA2A2Z9 1011 aa11.9□□□□□ -0.5
LIMA1-211ENST00000552338 FAM177BA6PVY3 158 aa11.9□□□□□ -0.5
LIMA1-211ENST00000552338 SRGNP10124 158 aa11.9□□□□□ -0.5
LIMA1-211ENST00000552338 COL11A2P13942 1736 aaPredicted RBP11.9□□□□□ -0.5
LIMA1-211ENST00000552338 IFIT5Q13325 482 aaKnown RBP11.9□□□□□ -0.5
LIMA1-211ENST00000552338 MSL1Q68DK7 614 aa11.9□□□□□ -0.5
LIMA1-211ENST00000552338 C3orf67Q6ZVT6 689 aa11.9□□□□□ -0.5
LIMA1-211ENST00000552338 LRRC37AA6NMS7 1700 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 EYA2O00167 538 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 ZBTB22O15209 634 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 POLD1P28340 1107 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 TGFB2P61812 414 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 FAM161AQ3B820 660 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 ERC1Q8IUD2 1116 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 CDC5LQ99459 802 aaKnown RBP11.89□□□□□ -0.51
LIMA1-211ENST00000552338 GPR108Q9NPR9 543 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 BSDC1Q9NW68 430 aaPredicted RBP11.89□□□□□ -0.51
LIMA1-211ENST00000552338 RIPOR2Q9Y4F9 1068 aa11.89□□□□□ -0.51
LIMA1-211ENST00000552338 COL4A1P02462 1669 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 BBOX1O75936 387 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 NPR1P16066 1061 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 IL15P40933 162 aaPredicted RBP11.88□□□□□ -0.51
LIMA1-211ENST00000552338 GRAPQ13588 217 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 STYK1Q6J9G0 422 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 B4GALNT3Q6L9W6 998 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 ATG9AQ7Z3C6 839 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 TMC4Q7Z404 712 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 GRAPLQ8TC17 118 aaPredicted RBP11.88□□□□□ -0.51
LIMA1-211ENST00000552338 MASTLQ96GX5 879 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 CD2APQ9Y5K6 639 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 SPEF2Q9C093 1822 aa11.88□□□□□ -0.51
LIMA1-211ENST00000552338 PSDA5PKW4 1024 aaPredicted RBP11.87□□□□□ -0.51
LIMA1-211ENST00000552338 SURF6O75683 361 aaKnown RBP11.87□□□□□ -0.51
LIMA1-211ENST00000552338 SASH1O94885 1247 aa11.87□□□□□ -0.51
LIMA1-211ENST00000552338 ZBTB7AO95365 584 aa11.87□□□□□ -0.51
LIMA1-211ENST00000552338 ALDH1B1P30837 517 aa11.87□□□□□ -0.51
LIMA1-211ENST00000552338 RPS8P62241 208 aaKnown RBP11.87□□□□□ -0.51
LIMA1-211ENST00000552338 NUCB1Q02818 461 aa11.87□□□□□ -0.51
LIMA1-211ENST00000552338 DDX46Q7L014 1031 aaKnown RBP11.87□□□□□ -0.51
LIMA1-211ENST00000552338 KIF1BPQ96EK5 621 aa11.87□□□□□ -0.51
LIMA1-211ENST00000552338 RBM17Q96I25 401 aaKnown RBP11.87□□□□□ -0.51
LIMA1-211ENST00000552338 SPON1Q9HCB6 807 aa11.87□□□□□ -0.51
LIMA1-211ENST00000552338 SEC31BQ9NQW1 1179 aa11.87□□□□□ -0.51
LIMA1-211ENST00000552338 LTBP1Q14766 1721 aa11.86□□□□□ -0.51
LIMA1-211ENST00000552338 NPHP1O15259 732 aa11.86□□□□□ -0.51
LIMA1-211ENST00000552338 G3BP1Q13283 466 aaKnown RBP eCLIP11.86□□□□□ -0.51
LIMA1-211ENST00000552338 LDHAL6AQ6ZMR3 332 aa11.86□□□□□ -0.51
LIMA1-211ENST00000552338 ANKRD18AQ8IVF6 992 aa11.86□□□□□ -0.51
LIMA1-211ENST00000552338 VGLL2Q8N8G2 317 aa11.86□□□□□ -0.51
LIMA1-211ENST00000552338 RHPN1Q8TCX5 695 aa11.86□□□□□ -0.51
LIMA1-211ENST00000552338 PA2G4Q9UQ80 394 aaKnown RBP11.86□□□□□ -0.51
LIMA1-211ENST00000552338 ATF5Q9Y2D1 282 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-211ENST00000552338 MROH5Q6ZUA9 1318 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms