RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SRGNP10124 158 aa26.59■■□□□ 1.85
VPS29-206ENST00000549578 DPEP1P16444 411 aa26.59■■□□□ 1.85
VPS29-206ENST00000549578 TGFB2P61812 414 aa26.59■■□□□ 1.85
VPS29-206ENST00000549578 SF3B3Q15393 1217 aaKnown RBP26.59■■□□□ 1.85
VPS29-206ENST00000549578 TTLL11Q8NHH1 800 aa26.59■■□□□ 1.85
VPS29-206ENST00000549578 GNAI2P04899 355 aa26.58■■□□□ 1.85
VPS29-206ENST00000549578 LMBR1LQ6UX01 489 aa26.58■■□□□ 1.85
VPS29-206ENST00000549578 ANKRD44Q8N8A2 993 aa26.58■■□□□ 1.85
VPS29-206ENST00000549578 RPGRQ92834 1020 aaKnown RBP26.57■■□□□ 1.84
VPS29-206ENST00000549578 SYT17Q9BSW7 474 aa26.57■■□□□ 1.84
VPS29-206ENST00000549578 ZBTB40Q9NUA8 1239 aa26.57■■□□□ 1.84
VPS29-206ENST00000549578 HDAC5Q9UQL6 1122 aa26.57■■□□□ 1.84
VPS29-206ENST00000549578 CSF1RP07333 972 aa26.56■■□□□ 1.84
VPS29-206ENST00000549578 CCDC152Q4G0S7 254 aa26.56■■□□□ 1.84
VPS29-206ENST00000549578 GREM2Q9H772 168 aa26.56■■□□□ 1.84
VPS29-206ENST00000549578 PDZRN3Q9UPQ7 1066 aa26.56■■□□□ 1.84
VPS29-206ENST00000549578 CHMP3Q9Y3E7 222 aa26.56■■□□□ 1.84
VPS29-206ENST00000549578 KCNA3P22001 575 aa26.55■■□□□ 1.84
VPS29-206ENST00000549578 FAM161AQ3B820 660 aa26.55■■□□□ 1.84
VPS29-206ENST00000549578 RABL6Q3YEC7 729 aaPredicted RBP26.55■■□□□ 1.84
VPS29-206ENST00000549578 ZNF622Q969S3 477 aaKnown RBP eCLIP26.55■■□□□ 1.84
VPS29-206ENST00000549578 CHMP4BQ9H444 224 aaKnown RBP26.55■■□□□ 1.84
VPS29-206ENST00000549578 DLEC1Q9Y238 1755 aa26.55■■□□□ 1.84
VPS29-206ENST00000549578 NPR1P16066 1061 aa26.55■■□□□ 1.84
VPS29-206ENST00000549578 MASTLQ96GX5 879 aa26.55■■□□□ 1.84
VPS29-206ENST00000549578 EXOC6Q8TAG9 804 aa26.54■■□□□ 1.84
VPS29-206ENST00000549578 SEC31BQ9NQW1 1179 aa26.54■■□□□ 1.84
VPS29-206ENST00000549578 TAF1P21675 1872 aa26.53■■□□□ 1.84
VPS29-206ENST00000549578 HOXA10P31260 410 aaPredicted RBP26.53■■□□□ 1.84
VPS29-206ENST00000549578 WWC3Q9ULE0 1092 aa26.53■■□□□ 1.84
VPS29-206ENST00000549578 COL4A1P02462 1669 aa26.53■■□□□ 1.84
VPS29-206ENST00000549578 STYK1Q6J9G0 422 aa26.52■■□□□ 1.84
VPS29-206ENST00000549578 DDX46Q7L014 1031 aaKnown RBP26.52■■□□□ 1.84
VPS29-206ENST00000549578 RBM17Q96I25 401 aaKnown RBP26.52■■□□□ 1.84
VPS29-206ENST00000549578 RTL9Q8NET4 1388 aa26.51■■□□□ 1.83
VPS29-206ENST00000549578 ITGA6P23229 1130 aa26.5■■□□□ 1.83
VPS29-206ENST00000549578 CACNA1SQ13698 1873 aa26.5■■□□□ 1.83
VPS29-206ENST00000549578 GOLGB1Q14789 3259 aaKnown RBP26.5■■□□□ 1.83
VPS29-206ENST00000549578 CRAMP1Q96RY5 1269 aa26.49■■□□□ 1.83
VPS29-206ENST00000549578 BRCA1P38398 1863 aaKnown RBP26.49■■□□□ 1.83
VPS29-206ENST00000549578 IFIT5Q13325 482 aaKnown RBP26.49■■□□□ 1.83
VPS29-206ENST00000549578 CELF1Q92879 486 aaKnown RBP26.49■■□□□ 1.83
VPS29-206ENST00000549578 PIM2Q9P1W9 311 aa26.49■■□□□ 1.83
VPS29-206ENST00000549578 GRAPQ13588 217 aa26.48■■□□□ 1.83
VPS29-206ENST00000549578 CCDC57Q2TAC2 916 aa26.48■■□□□ 1.83
VPS29-206ENST00000549578 GRAPLQ8TC17 118 aaPredicted RBP26.48■■□□□ 1.83
VPS29-206ENST00000549578 CNKSR1Q969H4 720 aa26.48■■□□□ 1.83
VPS29-206ENST00000549578 ANKRD18BA2A2Z9 1011 aa26.47■■□□□ 1.83
VPS29-206ENST00000549578 ALDH1B1P30837 517 aa26.47■■□□□ 1.83
VPS29-206ENST00000549578 MTX1Q13505 466 aa26.47■■□□□ 1.83
VPS29-206ENST00000549578 CEP85Q6P2H3 762 aa26.47■■□□□ 1.83
VPS29-206ENST00000549578 PNMA6EA0A0J9YXQ4 647 aa26.46■■□□□ 1.83
VPS29-206ENST00000549578 SRGAP3O43295 1099 aa26.46■■□□□ 1.83
VPS29-206ENST00000549578 PRPF40BQ6NWY9 871 aaKnown RBP26.46■■□□□ 1.83
VPS29-206ENST00000549578 TTLL6Q8N841 843 aa26.46■■□□□ 1.83
VPS29-206ENST00000549578 SLX4Q8IY92 1834 aa26.45■■□□□ 1.83
VPS29-206ENST00000549578 ZNF594Q96JF6 807 aaPredicted RBP26.45■■□□□ 1.83
VPS29-206ENST00000549578 CDC5LQ99459 802 aaKnown RBP26.45■■□□□ 1.83
VPS29-206ENST00000549578 ATP8B2P98198 1209 aa26.44■■□□□ 1.82
VPS29-206ENST00000549578 SLC51AQ86UW1 340 aa26.44■■□□□ 1.82
VPS29-206ENST00000549578 KLHDC4Q8TBB5 520 aa26.44■■□□□ 1.82
VPS29-206ENST00000549578 SPEF2Q9C093 1822 aa26.44■■□□□ 1.82
VPS29-206ENST00000549578 RFX5P48382 616 aaPredicted RBP26.44■■□□□ 1.82
VPS29-206ENST00000549578 RPS8P62241 208 aaKnown RBP26.44■■□□□ 1.82
VPS29-206ENST00000549578 DALRD3Q5D0E6 543 aaKnown RBP26.44■■□□□ 1.82
VPS29-206ENST00000549578 TAF7LQ5H9L4 462 aa26.44■■□□□ 1.82
VPS29-206ENST00000549578 ANKRD18AQ8IVF6 992 aa26.44■■□□□ 1.82
VPS29-206ENST00000549578 PPEF1O14829 653 aaPredicted RBP26.43■■□□□ 1.82
VPS29-206ENST00000549578 ZNF219Q9P2Y4 722 aaPredicted RBP26.43■■□□□ 1.82
VPS29-206ENST00000549578 BBOX1O75936 387 aa26.42■■□□□ 1.82
VPS29-206ENST00000549578 NEFLP07196 543 aa26.42■■□□□ 1.82
VPS29-206ENST00000549578 SIRT2Q8IXJ6 389 aa26.42■■□□□ 1.82
VPS29-206ENST00000549578 BCS1LQ9Y276 419 aa26.42■■□□□ 1.82
VPS29-206ENST00000549578 PCDHB15Q9Y5E8 787 aa26.42■■□□□ 1.82
VPS29-206ENST00000549578 IGHMBP2P38935 993 aaKnown RBP26.41■■□□□ 1.82
VPS29-206ENST00000549578 RPAP2Q8IXW5 612 aaPredicted RBP26.41■■□□□ 1.82
VPS29-206ENST00000549578 PTPN12Q05209 780 aaKnown RBP26.4■■□□□ 1.82
VPS29-206ENST00000549578 POLA2Q14181 598 aa26.4■■□□□ 1.82
VPS29-206ENST00000549578 PA2G4Q9UQ80 394 aaKnown RBP26.4■■□□□ 1.82
VPS29-206ENST00000549578 AAMPQ13685 434 aa26.39■■□□□ 1.82
VPS29-206ENST00000549578 OLFM4Q6UX06 510 aa26.39■■□□□ 1.82
VPS29-206ENST00000549578 SSH3Q8TE77 659 aa26.39■■□□□ 1.82
VPS29-206ENST00000549578 MPHOSPH8Q99549 860 aa26.39■■□□□ 1.82
VPS29-206ENST00000549578 C21orf2O43822 256 aa26.39■■□□□ 1.81
VPS29-206ENST00000549578 LDHAL6AQ6ZMR3 332 aa26.38■■□□□ 1.81
VPS29-206ENST00000549578 PELP1Q8IZL8 1130 aaKnown RBP26.38■■□□□ 1.81
VPS29-206ENST00000549578 C7orf43Q8WVR3 580 aa26.38■■□□□ 1.81
VPS29-206ENST00000549578 PUS3Q9BZE2 481 aaKnown RBP26.38■■□□□ 1.81
VPS29-206ENST00000549578 SIL1Q9H173 461 aa26.38■■□□□ 1.81
VPS29-206ENST00000549578 BSDC1Q9NW68 430 aaPredicted RBP26.38■■□□□ 1.81
VPS29-206ENST00000549578 ATP6V0A2Q9Y487 856 aa26.37■■□□□ 1.81
VPS29-206ENST00000549578 LRRC24Q50LG9 513 aa26.36■■□□□ 1.81
VPS29-206ENST00000549578 COPRSQ9NQ92 184 aa26.36■■□□□ 1.81
VPS29-206ENST00000549578 CNNM1Q9NRU3 951 aa26.36■■□□□ 1.81
VPS29-206ENST00000549578 TMC4Q7Z404 712 aa26.35■■□□□ 1.81
VPS29-206ENST00000549578 SP8Q8IXZ3 490 aa26.35■■□□□ 1.81
VPS29-206ENST00000549578 LRRC37AA6NMS7 1700 aa26.35■■□□□ 1.81
VPS29-206ENST00000549578 ARFGEF1Q9Y6D6 1849 aa26.35■■□□□ 1.81
VPS29-206ENST00000549578 HMMRO75330 724 aa26.34■■□□□ 1.81
VPS29-206ENST00000549578 YBX3P16989 372 aaKnown RBP eCLIP26.34■■□□□ 1.811e-6■■□□□ 11.7
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms