RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 RIPK4P57078 832 aa10.95□□□□□ -0.66
VPS29-203ENST00000546588 ERICH6BQ5W0A0 696 aa10.95□□□□□ -0.66
VPS29-203ENST00000546588 NUTM2AQ8IVF1 878 aaPredicted RBP10.95□□□□□ -0.66
VPS29-203ENST00000546588 MTMR14Q8NCE2 650 aa10.95□□□□□ -0.66
VPS29-203ENST00000546588 ITGB4P16144 1822 aa10.95□□□□□ -0.66
VPS29-203ENST00000546588 FAM187AA6NFU0 413 aa10.94□□□□□ -0.66
VPS29-203ENST00000546588 QPCTQ16769 361 aa10.94□□□□□ -0.66
VPS29-203ENST00000546588 PUS10Q3MIT2 529 aaKnown RBP10.94□□□□□ -0.66
VPS29-203ENST00000546588 SPSB2Q99619 263 aa10.94□□□□□ -0.66
VPS29-203ENST00000546588 BABAM1Q9NWV8 329 aa10.94□□□□□ -0.66
VPS29-203ENST00000546588 JCADQ9P266 1359 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 FANCIQ9NVI1 1328 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 THSD7AQ9UPZ6 1657 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 MTHFSDQ2M296 383 aaKnown RBP10.93□□□□□ -0.66
VPS29-203ENST00000546588 AMOTQ4VCS5 1084 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 CABLES1Q8TDN4 633 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 THAP11Q96EK4 314 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 MYH16Q9H6N6 1097 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 PRM3Q9NNZ6 103 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 AAASQ9NRG9 546 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 IFT57Q9NWB7 429 aa10.93□□□□□ -0.66
VPS29-203ENST00000546588 NEFLP07196 543 aa10.92□□□□□ -0.66
VPS29-203ENST00000546588 ZC3H6P61129 1189 aaKnown RBP10.92□□□□□ -0.66
VPS29-203ENST00000546588 ZNF428Q96B54 188 aa10.92□□□□□ -0.66
VPS29-203ENST00000546588 RRP7AQ9Y3A4 280 aaKnown RBP10.92□□□□□ -0.66
VPS29-203ENST00000546588 MORN1Q5T089 497 aa10.91□□□□□ -0.66
VPS29-203ENST00000546588 LCE2AQ5TA79 106 aaPredicted RBP10.91□□□□□ -0.66
VPS29-203ENST00000546588 RCAN3Q9UKA8 241 aa10.91□□□□□ -0.66
VPS29-203ENST00000546588 PCDHB15Q9Y5E8 787 aa10.91□□□□□ -0.66
VPS29-203ENST00000546588 C5P01031 1676 aa10.91□□□□□ -0.66
VPS29-203ENST00000546588 ZNF831Q5JPB2 1677 aa10.91□□□□□ -0.66
VPS29-203ENST00000546588 SOS1Q07889 1333 aaPredicted RBP10.9□□□□□ -0.66
VPS29-203ENST00000546588 SPATA31A6Q5VVP1 1343 aa10.9□□□□□ -0.66
VPS29-203ENST00000546588 RPIAP49247 311 aa10.9□□□□□ -0.66
VPS29-203ENST00000546588 GNAI1P63096 354 aa10.9□□□□□ -0.66
VPS29-203ENST00000546588 TUSC1Q2TAM9 212 aa10.9□□□□□ -0.66
VPS29-203ENST00000546588 RTL5Q5HYW3 569 aaPredicted RBP10.9□□□□□ -0.66
VPS29-203ENST00000546588 CRIPAKQ8N1N5 446 aa10.9□□□□□ -0.66
VPS29-203ENST00000546588 CARD10Q9BWT7 1032 aa10.9□□□□□ -0.66
VPS29-203ENST00000546588 PRDM11Q9NQV5 511 aa10.9□□□□□ -0.66
VPS29-203ENST00000546588 KDM6AO15550 1401 aaPredicted RBP10.9□□□□□ -0.66
VPS29-203ENST00000546588 FAM83GA6ND36 823 aa10.89□□□□□ -0.67
VPS29-203ENST00000546588 GNAT3A8MTJ3 354 aa10.89□□□□□ -0.67
VPS29-203ENST00000546588 CHL1O00533 1208 aa10.89□□□□□ -0.67
VPS29-203ENST00000546588 AKAP4Q5JQC9 854 aa10.89□□□□□ -0.67
VPS29-203ENST00000546588 CALR3Q96L12 384 aaKnown RBP10.89□□□□□ -0.67
VPS29-203ENST00000546588 TBC1D2BQ9UPU7 963 aa10.89□□□□□ -0.67
VPS29-203ENST00000546588 SALL2Q9Y467 1007 aaPredicted RBP10.89□□□□□ -0.67
VPS29-203ENST00000546588 DOT1LQ8TEK3 1739 aa10.89□□□□□ -0.67
VPS29-203ENST00000546588 UBAP1LF5GYI3 381 aa10.88□□□□□ -0.67
VPS29-203ENST00000546588 ST8SIA5O15466 376 aa10.88□□□□□ -0.67
VPS29-203ENST00000546588 LILRB3O75022 631 aa10.88□□□□□ -0.67
VPS29-203ENST00000546588 RRP1P56182 461 aaKnown RBP10.88□□□□□ -0.67
VPS29-203ENST00000546588 TNS2Q63HR2 1409 aa10.88□□□□□ -0.67
VPS29-203ENST00000546588 TOR4AQ9NXH8 423 aa10.88□□□□□ -0.67
VPS29-203ENST00000546588 SUPT16HQ9Y5B9 1047 aaKnown RBP10.88□□□□□ -0.67
VPS29-203ENST00000546588 KDM4AO75164 1064 aa10.87□□□□□ -0.67
VPS29-203ENST00000546588 AVPP01185 164 aa10.87□□□□□ -0.67
VPS29-203ENST00000546588 USP17L8P0C7I0 530 aa10.87□□□□□ -0.67
VPS29-203ENST00000546588 CHRNA2Q15822 529 aa10.87□□□□□ -0.67
VPS29-203ENST00000546588 PLEKHO1Q53GL0 409 aaPredicted RBP10.87□□□□□ -0.67
VPS29-203ENST00000546588 FAM160A2Q8N612 972 aaPredicted RBP10.87□□□□□ -0.67
VPS29-203ENST00000546588 HEG1Q9ULI3 1381 aa10.87□□□□□ -0.67
VPS29-203ENST00000546588 BCL9LQ86UU0 1499 aa10.87□□□□□ -0.67
VPS29-203ENST00000546588 SENP3-EIF4A1A0A087X0R7 540 aa10.86□□□□□ -0.67
VPS29-203ENST00000546588 FUT2Q10981 343 aa10.86□□□□□ -0.67
VPS29-203ENST00000546588 ALDH1L2Q3SY69 923 aa10.86□□□□□ -0.67
VPS29-203ENST00000546588 USHBP1Q8N6Y0 703 aa10.86□□□□□ -0.67
VPS29-203ENST00000546588 LTV1Q96GA3 475 aaPredicted RBP10.86□□□□□ -0.67
VPS29-203ENST00000546588 MBIPQ9NS73 344 aa10.86□□□□□ -0.67
VPS29-203ENST00000546588 SBF2Q86WG5 1849 aa10.86□□□□□ -0.67
VPS29-203ENST00000546588 POM121CA8CG34 1229 aa10.85□□□□□ -0.67
VPS29-203ENST00000546588 RARSP54136 660 aaKnown RBP10.85□□□□□ -0.67
VPS29-203ENST00000546588 IL17REQ8NFR9 667 aa10.85□□□□□ -0.67
VPS29-203ENST00000546588 PCDH11XQ9BZA7 1347 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 PCDH11YQ9BZA8 1340 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 TATP17735 454 aaPredicted RBP10.84□□□□□ -0.67
VPS29-203ENST00000546588 GJA5P36382 358 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 ATP6V1AP38606 617 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 GCGRP47871 477 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 RAPGEF4Q8WZA2 1011 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 TSC1Q92574 1164 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 ZBTB3Q9H5J0 574 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 SPG7Q9UQ90 795 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 THRAP3Q9Y2W1 955 aaKnown RBP10.84□□□□□ -0.67
VPS29-203ENST00000546588 FCF1Q9Y324 198 aaKnown RBP10.84□□□□□ -0.67
VPS29-203ENST00000546588 RREB1Q92766 1687 aa10.84□□□□□ -0.67
VPS29-203ENST00000546588 HOXB7P09629 217 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 FDX1P10109 184 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 IL2RBP14784 551 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 PHKG2P15735 406 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 EXOSC9Q06265 439 aaKnown RBP10.83□□□□□ -0.68
VPS29-203ENST00000546588 FOXC1Q12948 553 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 MCM10Q7L590 875 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 RTF1Q92541 710 aaKnown RBP10.83□□□□□ -0.68
VPS29-203ENST00000546588 GLMNQ92990 594 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 TSR2Q969E8 191 aaKnown RBP10.83□□□□□ -0.68
VPS29-203ENST00000546588 THUMPD2Q9BTF0 503 aaKnown RBP10.83□□□□□ -0.68
VPS29-203ENST00000546588 CDCA7Q9BWT1 371 aaPredicted RBP10.83□□□□□ -0.68
VPS29-203ENST00000546588 NLRP2Q9NX02 1062 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms