RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 UBE3BQ7Z3V4 1068 aa18.79■□□□□ 0.6
LDLR-204ENST00000545707 RAPGEF4Q8WZA2 1011 aa18.79■□□□□ 0.6
LDLR-204ENST00000545707 METTL22Q9BUU2 404 aaPredicted RBP18.79■□□□□ 0.6
LDLR-204ENST00000545707 LRRC2Q9BYS8 371 aa18.79■□□□□ 0.6
LDLR-204ENST00000545707 ERBB3P21860 1342 aa18.79■□□□□ 0.6
LDLR-204ENST00000545707 CHD2O14647 1828 aaKnown RBP18.79■□□□□ 0.6
LDLR-204ENST00000545707 SLFNL1Q499Z3 407 aa18.79■□□□□ 0.6
LDLR-204ENST00000545707 ANKRD13DQ6ZTN6 518 aa18.79■□□□□ 0.6
LDLR-204ENST00000545707 PIBF1Q8WXW3 757 aa18.79■□□□□ 0.6
LDLR-204ENST00000545707 SNRKQ9NRH2 765 aa18.79■□□□□ 0.6
LDLR-204ENST00000545707 PTPN12Q05209 780 aaKnown RBP18.78■□□□□ 0.6
LDLR-204ENST00000545707 DDX11Q96FC9 970 aa18.78■□□□□ 0.6
LDLR-204ENST00000545707 DBNDD2Q9BQY9 259 aa18.78■□□□□ 0.6
LDLR-204ENST00000545707 NPHP3Q7Z494 1330 aa18.78■□□□□ 0.6
LDLR-204ENST00000545707 TNNI3KQ59H18 835 aa18.77■□□□□ 0.6
LDLR-204ENST00000545707 DACT1Q9NYF0 836 aa18.77■□□□□ 0.6
LDLR-204ENST00000545707 FPGT-TNNI3KV9GXZ4 949 aa18.77■□□□□ 0.6
LDLR-204ENST00000545707 CCDC192P0DO97 292 aa18.76■□□□□ 0.59
LDLR-204ENST00000545707 RFX5P48382 616 aaPredicted RBP18.76■□□□□ 0.59
LDLR-204ENST00000545707 DDX46Q7L014 1031 aaKnown RBP18.76■□□□□ 0.59
LDLR-204ENST00000545707 KDM6AO15550 1401 aaPredicted RBP18.76■□□□□ 0.59
LDLR-204ENST00000545707 PHKG2P15735 406 aa18.76■□□□□ 0.59
LDLR-204ENST00000545707 ANKRD1Q15327 319 aa18.76■□□□□ 0.59
LDLR-204ENST00000545707 SPATA32Q96LK8 384 aa18.76■□□□□ 0.59
LDLR-204ENST00000545707 OVOS2A0A0G2JMS6 1433 aa18.76■□□□□ 0.59
LDLR-204ENST00000545707 PPFIA3O75145 1194 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 LUZP1Q86V48 1076 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 NUP62CLQ9H1M0 184 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 KCNF1Q9H3M0 494 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 FAM177BA6PVY3 158 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 PDCP20941 246 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 FOSBP53539 338 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 CABLES1Q8TDN4 633 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 COPRSQ9NQ92 184 aa18.75■□□□□ 0.59
LDLR-204ENST00000545707 GOLGA6L4A6NEF3 574 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 ATP5JP18859 108 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 MAP3K11Q16584 847 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 Q6ZUG5 572 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 LRP10Q7Z4F1 713 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 NEK1Q96PY6 1258 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 PYCARDQ9ULZ3 195 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 MRVI1Q9Y6F6 885 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 A0A087WZG4 1122 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 DYNC1I1O14576 645 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 TRHP20396 242 aaPredicted RBP18.74■□□□□ 0.59
LDLR-204ENST00000545707 TYRO3Q06418 890 aa18.74■□□□□ 0.59
LDLR-204ENST00000545707 LEO1Q8WVC0 666 aaPredicted RBP18.74■□□□□ 0.59
LDLR-204ENST00000545707 CYP21A2P08686 494 aa18.73■□□□□ 0.59
LDLR-204ENST00000545707 CSB-PGBD3P0DP91 1061 aa18.73■□□□□ 0.59
LDLR-204ENST00000545707 HSP90B1P14625 803 aaKnown RBP18.73■□□□□ 0.59
LDLR-204ENST00000545707 TATP17735 454 aaPredicted RBP18.73■□□□□ 0.59
LDLR-204ENST00000545707 CHRNA2Q15822 529 aa18.73■□□□□ 0.59
LDLR-204ENST00000545707 SLIT3O75094 1523 aa18.73■□□□□ 0.59
LDLR-204ENST00000545707 CEBPZQ03701 1054 aaKnown RBP18.73■□□□□ 0.59
LDLR-204ENST00000545707 TTC5Q8N0Z6 440 aa18.73■□□□□ 0.59
LDLR-204ENST00000545707 BRF1Q92994 677 aa18.73■□□□□ 0.59
LDLR-204ENST00000545707 TNMDQ9H2S6 317 aa18.73■□□□□ 0.59
LDLR-204ENST00000545707 ZNF609O15014 1411 aa18.73■□□□□ 0.59
LDLR-204ENST00000545707 PHRF1Q9P1Y6 1649 aaKnown RBP18.72■□□□□ 0.59
LDLR-204ENST00000545707 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.72■□□□□ 0.59
LDLR-204ENST00000545707 NR1I2O75469 434 aa18.72■□□□□ 0.59
LDLR-204ENST00000545707 USPL1Q5W0Q7 1092 aa18.72■□□□□ 0.59
LDLR-204ENST00000545707 PROSER2Q86WR7 435 aaPredicted RBP18.72■□□□□ 0.59
LDLR-204ENST00000545707 PGBD1Q96JS3 809 aa18.72■□□□□ 0.59
LDLR-204ENST00000545707 HMG20BQ9P0W2 317 aa18.72■□□□□ 0.59
LDLR-204ENST00000545707 SNRPA1P09661 255 aaKnown RBP18.72■□□□□ 0.59
LDLR-204ENST00000545707 TSGA10IPQ3SY00 556 aa18.72■□□□□ 0.59
LDLR-204ENST00000545707 ANO6Q4KMQ2 910 aa18.72■□□□□ 0.59
LDLR-204ENST00000545707 A0A0G2JLW4 131 aa18.71■□□□□ 0.59
LDLR-204ENST00000545707 CYP27B1O15528 508 aa18.71■□□□□ 0.59
LDLR-204ENST00000545707 LMBR1LQ6UX01 489 aa18.71■□□□□ 0.59
LDLR-204ENST00000545707 FAM200AQ8TCP9 573 aa18.71■□□□□ 0.59
LDLR-204ENST00000545707 GTF3C6Q969F1 213 aa18.71■□□□□ 0.59
LDLR-204ENST00000545707 ALDH8A1Q9H2A2 487 aaPredicted RBP18.71■□□□□ 0.59
LDLR-204ENST00000545707 ELP1O95163 1332 aa18.71■□□□□ 0.59
LDLR-204ENST00000545707 STOX1Q6ZVD7 989 aa18.71■□□□□ 0.59
LDLR-204ENST00000545707 NEUROD6Q96NK8 337 aa18.71■□□□□ 0.59
LDLR-204ENST00000545707 SCAND2PQ9GZW5 306 aaPredicted RBP18.71■□□□□ 0.59
LDLR-204ENST00000545707 RGPD5Q99666 1765 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 JCADQ9P266 1359 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 IFNL2Q8IZJ0 200 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 MYRIPQ8NFW9 859 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 BICD2Q8TD16 824 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 CBX8Q9HC52 389 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 C5P01031 1676 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 TIMM10P62072 90 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 FGD1P98174 961 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 ZMYND15Q9H091 742 aa18.7■□□□□ 0.58
LDLR-204ENST00000545707 SIPA1L3O60292 1781 aaPredicted RBP18.69■□□□□ 0.58
LDLR-204ENST00000545707 SCRN1Q12765 414 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 MCMDC2Q4G0Z9 681 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 FTOQ9C0B1 505 aaKnown RBP eCLIP18.69■□□□□ 0.58
LDLR-204ENST00000545707 MEGF6O75095 1541 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 H3BQV1 296 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 GOLIM4O00461 696 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 PTGS1P23219 599 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 IFFO2Q5TF58 517 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 KIAA1524Q8TCG1 905 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 HAUS7Q99871 368 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 DNAJC5Q9H3Z4 198 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms