RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 HLA-CQ95604 372 aa7.8□□□□□ -1.16
SYNE1-239ENST00000545694 SPG7Q9UQ90 795 aa7.8□□□□□ -1.16
SYNE1-239ENST00000545694 ABCA3Q99758 1704 aa7.8□□□□□ -1.16
SYNE1-239ENST00000545694 AHDC1Q5TGY3 1603 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-239ENST00000545694 AXIN1O15169 862 aa7.79□□□□□ -1.16
SYNE1-239ENST00000545694 TATP17735 454 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-239ENST00000545694 CCT4P50991 539 aaKnown RBP7.79□□□□□ -1.16
SYNE1-239ENST00000545694 MDM2Q00987 491 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-239ENST00000545694 TEFQ10587 303 aa7.79□□□□□ -1.16
SYNE1-239ENST00000545694 Q3C1V9 767 aa7.79□□□□□ -1.16
SYNE1-239ENST00000545694 TMEM57Q8N5G2 664 aa7.79□□□□□ -1.16
SYNE1-239ENST00000545694 PXDNLA1KZ92 1463 aa7.79□□□□□ -1.16
SYNE1-239ENST00000545694 IRF6O14896 467 aa7.78□□□□□ -1.16
SYNE1-239ENST00000545694 ZBTB7BO15156 539 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-239ENST00000545694 EIF5BO60841 1220 aaKnown RBP7.78□□□□□ -1.16
SYNE1-239ENST00000545694 KDM4AO75164 1064 aa7.78□□□□□ -1.16
SYNE1-239ENST00000545694 AVPP01185 164 aa7.78□□□□□ -1.16
SYNE1-239ENST00000545694 ZC3H6P61129 1189 aaKnown RBP7.78□□□□□ -1.16
SYNE1-239ENST00000545694 MAP2K5Q13163 448 aa7.78□□□□□ -1.16
SYNE1-239ENST00000545694 LRRC59Q96AG4 307 aaKnown RBP7.78□□□□□ -1.16
SYNE1-239ENST00000545694 GCC1Q96CN9 775 aa7.78□□□□□ -1.16
SYNE1-239ENST00000545694 BACH2Q9BYV9 841 aa7.78□□□□□ -1.16
SYNE1-239ENST00000545694 GMPR2Q9P2T1 348 aaKnown RBP7.78□□□□□ -1.16
SYNE1-239ENST00000545694 PCDHB15Q9Y5E8 787 aa7.78□□□□□ -1.16
SYNE1-239ENST00000545694 COL22A1Q8NFW1 1626 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-239ENST00000545694 WDR17Q8IZU2 1322 aa7.78□□□□□ -1.16
SYNE1-239ENST00000545694 IBTKQ9P2D0 1353 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-239ENST00000545694 ZBTB7CA1YPR0 619 aa7.77□□□□□ -1.17
SYNE1-239ENST00000545694 RNMTO43148 476 aaKnown RBP7.77□□□□□ -1.17
SYNE1-239ENST00000545694 CSB-PGBD3P0DP91 1061 aa7.77□□□□□ -1.17
SYNE1-239ENST00000545694 RPAP2Q8IXW5 612 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-239ENST00000545694 SMC5Q8IY18 1101 aa7.77□□□□□ -1.17
SYNE1-239ENST00000545694 IFNL2Q8IZJ0 200 aa7.77□□□□□ -1.17
SYNE1-239ENST00000545694 CRIPAKQ8N1N5 446 aa7.77□□□□□ -1.17
SYNE1-239ENST00000545694 USB1Q9BQ65 265 aaKnown RBP7.77□□□□□ -1.17
SYNE1-239ENST00000545694 NLRP2Q9NX02 1062 aa7.77□□□□□ -1.17
SYNE1-239ENST00000545694 HDAC5Q9UQL6 1122 aa7.77□□□□□ -1.17
SYNE1-239ENST00000545694 MRC1P22897 1456 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 HEG1Q9ULI3 1381 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 ELL2O00472 640 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-239ENST00000545694 IGHDP01880 384 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 MMP16P51512 607 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 EIF4A1P60842 406 aaKnown RBP7.76□□□□□ -1.17
SYNE1-239ENST00000545694 TRIM32Q13049 653 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 TREML4Q6UXN2 200 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 CCDC24Q8N4L8 307 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 USHBP1Q8N6Y0 703 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 DCAF5Q96JK2 942 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 CARD10Q9BWT7 1032 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 PRDM11Q9NQV5 511 aa7.76□□□□□ -1.17
SYNE1-239ENST00000545694 COL14A1Q05707 1796 aaKnown RBP7.76□□□□□ -1.17
SYNE1-239ENST00000545694 LTBP4Q8N2S1 1624 aa7.75□□□□□ -1.17
SYNE1-239ENST00000545694 BTBD11A6QL63 1104 aa7.75□□□□□ -1.17
SYNE1-239ENST00000545694 WNT7AO00755 349 aa7.75□□□□□ -1.17
SYNE1-239ENST00000545694 HMMRO75330 724 aa7.75□□□□□ -1.17
SYNE1-239ENST00000545694 SMPD1P17405 629 aa7.75□□□□□ -1.17
SYNE1-239ENST00000545694 ANP32AP39687 249 aaKnown RBP7.75□□□□□ -1.17
SYNE1-239ENST00000545694 SNIP1Q8TAD8 396 aaKnown RBP7.75□□□□□ -1.17
SYNE1-239ENST00000545694 MRGPRX2Q96LB1 330 aa7.75□□□□□ -1.17
SYNE1-239ENST00000545694 RGS12O14924 1447 aa7.75□□□□□ -1.17
SYNE1-239ENST00000545694 COL5A2P05997 1499 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-239ENST00000545694 ROBO1Q9Y6N7 1651 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 J3QL48 77 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 GNAI3P08754 354 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 PHKG2P15735 406 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 GUCA2AQ02747 115 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 FLIIQ13045 1269 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 HDGFL1Q5TGJ6 251 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 DBF4Q9UBU7 674 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-239ENST00000545694 TNNQ9UQP3 1299 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 PCDH11XQ9BZA7 1347 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 PCDH11YQ9BZA8 1340 aa7.74□□□□□ -1.17
SYNE1-239ENST00000545694 ERVV-2B6SEH9 535 aa7.73□□□□□ -1.17
SYNE1-239ENST00000545694 DXOO77932 396 aaKnown RBP7.73□□□□□ -1.17
SYNE1-239ENST00000545694 CTC1Q2NKJ3 1217 aa7.73□□□□□ -1.17
SYNE1-239ENST00000545694 MPRIPQ6WCQ1 1025 aa7.73□□□□□ -1.17
SYNE1-239ENST00000545694 SYMPKQ92797 1274 aaKnown RBP7.73□□□□□ -1.17
SYNE1-239ENST00000545694 DDX17Q92841 729 aaKnown RBP7.73□□□□□ -1.17
SYNE1-239ENST00000545694 SLC52A2Q9HAB3 445 aa7.73□□□□□ -1.17
SYNE1-239ENST00000545694 LGR6Q9HBX8 967 aa7.73□□□□□ -1.17
SYNE1-239ENST00000545694 HYPKQ9NX55 129 aa7.73□□□□□ -1.17
SYNE1-239ENST00000545694 MIS18AQ9NYP9 233 aa7.73□□□□□ -1.17
SYNE1-239ENST00000545694 MEGF6O75095 1541 aa7.73□□□□□ -1.17
SYNE1-239ENST00000545694 ATP10DQ9P241 1426 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 TULP1O00294 542 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-239ENST00000545694 HOXA2O43364 376 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 GIGYF1O75420 1035 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-239ENST00000545694 IL2RBP14784 551 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 SMCPP49901 116 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-239ENST00000545694 USP46P62068 366 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 NUCB1Q02818 461 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 FKBP5Q13451 457 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-239ENST00000545694 LCE2AQ5TA79 106 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-239ENST00000545694 TOM1L2Q6ZVM7 507 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 ANKRD44Q8N8A2 993 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 ZCRB1Q8TBF4 217 aaKnown RBP7.72□□□□□ -1.17
SYNE1-239ENST00000545694 CABLES1Q8TDN4 633 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 CCDC102AQ96A19 550 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 DDRGK1Q96HY6 314 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 CDCA7Q9BWT1 371 aaPredicted RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms