RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 LRSAM1Q6UWE0 723 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 USP48Q86UV5 1035 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 HAUS7Q99871 368 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 RFX7Q2KHR2 1363 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 JCADQ9P266 1359 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 SYCE3A1L190 88 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 GJB2P29033 226 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 ME3Q16798 604 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 BLOC1S2Q6QNY1 142 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 SYAP1Q96A49 352 aaPredicted RBP21.28■■□□□ 1
PTPN6-222ENST00000543744 PPP1R9BQ96SB3 815 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 RBSNQ9H1K0 784 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 GDPD2Q9HCC8 539 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 ATP6V1DQ9Y5K8 247 aa21.28■■□□□ 1
PTPN6-222ENST00000543744 PAPPAQ13219 1627 aa21.27■■□□□ 1
PTPN6-222ENST00000543744 TNS2Q63HR2 1409 aa21.27■■□□□ 1
PTPN6-222ENST00000543744 NUP188Q5SRE5 1749 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 ANKRD1Q15327 319 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 ATG9AQ7Z3C6 839 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 TMOD3Q9NYL9 352 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 NDUFB9Q9Y6M9 179 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 STRCQ7RTU9 1775 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 F13A1P00488 732 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 IL15P40933 162 aaPredicted RBP21.26■□□□□ 0.99
PTPN6-222ENST00000543744 TSGA10IPQ3SY00 556 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 TMEM87AQ8NBN3 555 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 TPCN1Q9ULQ1 816 aa21.26■□□□□ 0.99
PTPN6-222ENST00000543744 ABCA3Q99758 1704 aa21.25■□□□□ 0.99
PTPN6-222ENST00000543744 GADD45BO75293 160 aaPredicted RBP21.25■□□□□ 0.99
PTPN6-222ENST00000543744 RPS6KB1P23443 525 aa21.25■□□□□ 0.99
PTPN6-222ENST00000543744 USPL1Q5W0Q7 1092 aa21.25■□□□□ 0.99
PTPN6-222ENST00000543744 NEUROD6Q96NK8 337 aa21.25■□□□□ 0.99
PTPN6-222ENST00000543744 GPR108Q9NPR9 543 aa21.25■□□□□ 0.99
PTPN6-222ENST00000543744 NECAB1Q8N987 351 aa21.24■□□□□ 0.99
PTPN6-222ENST00000543744 ALDH8A1Q9H2A2 487 aaPredicted RBP21.24■□□□□ 0.99
PTPN6-222ENST00000543744 ST3GAL1Q11201 340 aa21.24■□□□□ 0.99
PTPN6-222ENST00000543744 KRT32Q14532 448 aa21.24■□□□□ 0.99
PTPN6-222ENST00000543744 DDX46Q7L014 1031 aaKnown RBP21.24■□□□□ 0.99
PTPN6-222ENST00000543744 CNPY2Q9Y2B0 182 aa21.24■□□□□ 0.99
PTPN6-222ENST00000543744 CCDC9Q9Y3X0 531 aaKnown RBP21.24■□□□□ 0.99
PTPN6-222ENST00000543744 SHANK3Q9BYB0 1731 aa21.24■□□□□ 0.99
PTPN6-222ENST00000543744 ESPNB1AK53 854 aa21.23■□□□□ 0.99
PTPN6-222ENST00000543744 MCMDC2Q4G0Z9 681 aa21.23■□□□□ 0.99
PTPN6-222ENST00000543744 TAF6LQ9Y6J9 622 aa21.23■□□□□ 0.99
PTPN6-222ENST00000543744 EYA2O00167 538 aa21.22■□□□□ 0.99
PTPN6-222ENST00000543744 KBTBD3Q8NAB2 608 aa21.22■□□□□ 0.99
PTPN6-222ENST00000543744 ATG3Q9NT62 314 aa21.22■□□□□ 0.99
PTPN6-222ENST00000543744 MTMR6Q9Y217 621 aa21.22■□□□□ 0.99
PTPN6-222ENST00000543744 ZNF609O15014 1411 aa21.22■□□□□ 0.99
PTPN6-222ENST00000543744 TJP1Q07157 1748 aa21.22■□□□□ 0.99
PTPN6-222ENST00000543744 CLCN1P35523 988 aa21.22■□□□□ 0.99
PTPN6-222ENST00000543744 COL9A3Q14050 684 aaPredicted RBP21.22■□□□□ 0.99
PTPN6-222ENST00000543744 U3KPZ7 1027 aaPredicted RBP21.22■□□□□ 0.99
PTPN6-222ENST00000543744 PHF14O94880 888 aa21.21■□□□□ 0.99
PTPN6-222ENST00000543744 TIMM10P62072 90 aa21.21■□□□□ 0.99
PTPN6-222ENST00000543744 TCEANC2Q96MN5 208 aa21.21■□□□□ 0.99
PTPN6-222ENST00000543744 ISCA1Q9BUE6 129 aa21.21■□□□□ 0.99
PTPN6-222ENST00000543744 TEX13AQ9BXU3 409 aaPredicted RBP21.21■□□□□ 0.99
PTPN6-222ENST00000543744 CIAO1O76071 339 aa21.21■□□□□ 0.99
PTPN6-222ENST00000543744 PDIA4P13667 645 aaKnown RBP21.21■□□□□ 0.99
PTPN6-222ENST00000543744 TCIRG1Q13488 830 aa21.21■□□□□ 0.99
PTPN6-222ENST00000543744 LRRC24Q50LG9 513 aa21.21■□□□□ 0.99
PTPN6-222ENST00000543744 ZNF594Q96JF6 807 aaPredicted RBP21.21■□□□□ 0.99
PTPN6-222ENST00000543744 SEC62Q99442 399 aaKnown RBP21.21■□□□□ 0.99
PTPN6-222ENST00000543744 ZNF330Q9Y3S2 320 aaPredicted RBP21.21■□□□□ 0.99
PTPN6-222ENST00000543744 CHGBP05060 677 aa21.2■□□□□ 0.98
PTPN6-222ENST00000543744 CCDC129Q6ZRS4 1044 aa21.2■□□□□ 0.98
PTPN6-222ENST00000543744 PAG1Q9NWQ8 432 aa21.2■□□□□ 0.98
PTPN6-222ENST00000543744 GOLIM4O00461 696 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 TOB2Q14106 344 aaPredicted RBP21.19■□□□□ 0.98
PTPN6-222ENST00000543744 VSIG10Q8N0Z9 540 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 PALLDQ8WX93 1383 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 SH3TC1Q8TE82 1336 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 VPS37CA5D8V6 355 aaPredicted RBP21.19■□□□□ 0.98
PTPN6-222ENST00000543744 DTNBO60941 627 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 UBE2HP62256 183 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 CSPP1Q1MSJ5 1256 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 TICAM2Q86XR7 235 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 PIGBQ92521 554 aa21.19■□□□□ 0.98
PTPN6-222ENST00000543744 LARP1BQ659C4 914 aaKnown RBP21.18■□□□□ 0.98
PTPN6-222ENST00000543744 KIF6Q6ZMV9 814 aa21.18■□□□□ 0.98
PTPN6-222ENST00000543744 NEK1Q96PY6 1258 aa21.18■□□□□ 0.98
PTPN6-222ENST00000543744 ASAP1Q9ULH1 1129 aa21.18■□□□□ 0.98
PTPN6-222ENST00000543744 TOGARAM1Q9Y4F4 1720 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 PDCP20941 246 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 TRIM28Q13263 835 aaKnown RBP21.17■□□□□ 0.98
PTPN6-222ENST00000543744 CCDC57Q2TAC2 916 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 DNAJC10Q8IXB1 793 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 TSPY26PQ9H489 355 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 HELLSQ9NRZ9 838 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 BTG4Q9NY30 223 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 A0A1B0GUL7 405 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 FIBPO43427 364 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 STARD3NLO95772 234 aa21.17■□□□□ 0.98
PTPN6-222ENST00000543744 DNM1Q05193 864 aaKnown RBP21.16■□□□□ 0.98
PTPN6-222ENST00000543744 PUS3Q9BZE2 481 aaKnown RBP21.16■□□□□ 0.98
PTPN6-222ENST00000543744 CEP126Q9P2H0 1117 aa21.16■□□□□ 0.98
PTPN6-222ENST00000543744 NHSL1Q5SYE7 1610 aa21.16■□□□□ 0.98
PTPN6-222ENST00000543744 CYP21A2P08686 494 aa21.16■□□□□ 0.98
PTPN6-222ENST00000543744 IFIT1P09914 478 aaKnown RBP21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms