RNA–Protein interactions for RNA: ENST00000543695.5

LDHA-222, Transcript of lactate dehydrogenase A, human

TSL 5

Gene LDHA, Length 554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-222	ENST00000543695	LRP10	Q7Z4F1	713 aa		13.68	□□□□□ -0.22
LDHA-222	ENST00000543695	CNTROB	Q8N137	903 aa		13.68	□□□□□ -0.22
LDHA-222	ENST00000543695	ARHGEF1	Q92888	912 aa	Known RBP	13.68	□□□□□ -0.22
LDHA-222	ENST00000543695	SUCLG2	Q96I99	432 aa		13.68	□□□□□ -0.22
LDHA-222	ENST00000543695	CNTNAP4	Q9C0A0	1308 aa		13.67	□□□□□ -0.22
LDHA-222	ENST00000543695	NEURL1B	A8MQ27	555 aa		13.67	□□□□□ -0.22
LDHA-222	ENST00000543695	IGKV5-2	P06315	115 aa		13.67	□□□□□ -0.22
LDHA-222	ENST00000543695	YBX3	P16989	372 aa	Known RBP eCLIP	13.67	□□□□□ -0.22	1e-29	■■□□□ 11.8
LDHA-222	ENST00000543695	CLASRP	Q8N2M8	674 aa	Known RBP	13.67	□□□□□ -0.22
LDHA-222	ENST00000543695	XAGE3	Q8WTP9	111 aa		13.67	□□□□□ -0.22
LDHA-222	ENST00000543695	TNPO1	Q92973	898 aa	Known RBP	13.67	□□□□□ -0.22
LDHA-222	ENST00000543695	GPATCH3	Q96I76	525 aa		13.67	□□□□□ -0.22
LDHA-222	ENST00000543695	CWC22	Q9HCG8	908 aa	Known RBP	13.67	□□□□□ -0.22
LDHA-222	ENST00000543695	MMP10	P09238	476 aa		13.66	□□□□□ -0.22
LDHA-222	ENST00000543695	NUCB2	P80303	420 aa		13.66	□□□□□ -0.22
LDHA-222	ENST00000543695	AIMP1	Q12904	312 aa	Known RBP	13.66	□□□□□ -0.22
LDHA-222	ENST00000543695	COL24A1	Q17RW2	1714 aa		13.66	□□□□□ -0.22
LDHA-222	ENST00000543695	TAF1L	Q8IZX4	1826 aa		13.65	□□□□□ -0.22
LDHA-222	ENST00000543695	CRKL	P46109	303 aa	Known RBP	13.65	□□□□□ -0.22
LDHA-222	ENST00000543695	GCKR	Q14397	625 aa		13.65	□□□□□ -0.22
LDHA-222	ENST00000543695	COPS6	Q7L5N1	327 aa		13.65	□□□□□ -0.22
LDHA-222	ENST00000543695	KAZALD1	Q96I82	304 aa		13.65	□□□□□ -0.22
LDHA-222	ENST00000543695	BICC1	Q9H694	974 aa	Known RBP	13.65	□□□□□ -0.22
LDHA-222	ENST00000543695	GOLGB1	Q14789	3259 aa	Known RBP	13.65	□□□□□ -0.22
LDHA-222	ENST00000543695	SGSM2	O43147	1006 aa		13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	TRAK2	O60296	914 aa		13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	MYL6B	P14649	208 aa		13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.64	□□□□□ -0.23	1e-15	■■■■□ 22.4
LDHA-222	ENST00000543695	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	L1TD1	Q5T7N2	865 aa	Known RBP	13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	ANKRD13D	Q6ZTN6	518 aa		13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	MYD88	Q99836	296 aa		13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	ANO2	Q9NQ90	1003 aa		13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	ECHDC1	Q9NTX5	307 aa		13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	USP16	Q9Y5T5	823 aa		13.64	□□□□□ -0.23
LDHA-222	ENST00000543695	IFIT2	P09913	472 aa	Known RBP	13.63	□□□□□ -0.23
LDHA-222	ENST00000543695	GYS1	P13807	737 aa		13.63	□□□□□ -0.23
LDHA-222	ENST00000543695	PLBD2	Q8NHP8	589 aa		13.63	□□□□□ -0.23
LDHA-222	ENST00000543695	ANKRD36C	Q5JPF3	1778 aa		13.63	□□□□□ -0.23
LDHA-222	ENST00000543695	RAD50	Q92878	1312 aa		13.63	□□□□□ -0.23
LDHA-222	ENST00000543695	CYP2E1	P05181	493 aa	Predicted RBP	13.62	□□□□□ -0.23
LDHA-222	ENST00000543695	HSPA4	P34932	840 aa		13.62	□□□□□ -0.23
LDHA-222	ENST00000543695	TGFB2	P61812	414 aa		13.62	□□□□□ -0.23
LDHA-222	ENST00000543695	RUFY2	Q8WXA3	655 aa		13.62	□□□□□ -0.23
LDHA-222	ENST00000543695	FOXD4L1	Q9NU39	408 aa		13.62	□□□□□ -0.23
LDHA-222	ENST00000543695	PA2G4	Q9UQ80	394 aa	Known RBP	13.62	□□□□□ -0.23
LDHA-222	ENST00000543695	PARP3	Q9Y6F1	533 aa		13.62	□□□□□ -0.23
LDHA-222	ENST00000543695	GOLGA6L22	H0YM25	854 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	HIP1	O00291	1037 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	SASH1	O94885	1247 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	NEK4	P51957	841 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	CUL4A	Q13619	759 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	RABL6	Q3YEC7	729 aa	Predicted RBP	13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	INTS5	Q6P9B9	1019 aa	Known RBP	13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	DNAJC10	Q8IXB1	793 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	EVI5L	Q96CN4	794 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	LSG1	Q9H089	658 aa	Known RBP	13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	COPRS	Q9NQ92	184 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	CCDC87	Q9NVE4	849 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	UBR3	Q6ZT12	1888 aa		13.61	□□□□□ -0.23
LDHA-222	ENST00000543695	ZPR1	O75312	459 aa		13.6	□□□□□ -0.23
LDHA-222	ENST00000543695	AACS	Q86V21	672 aa		13.6	□□□□□ -0.23
LDHA-222	ENST00000543695	VSIG10	Q8N0Z9	540 aa		13.6	□□□□□ -0.23
LDHA-222	ENST00000543695	WWC3	Q9ULE0	1092 aa		13.6	□□□□□ -0.23
LDHA-222	ENST00000543695	PALD1	Q9ULE6	856 aa		13.6	□□□□□ -0.23
LDHA-222	ENST00000543695	ISY1	Q9ULR0	285 aa	Known RBP	13.6	□□□□□ -0.23
LDHA-222	ENST00000543695	MAP4K4	O95819	1239 aa	Predicted RBP	13.59	□□□□□ -0.23
LDHA-222	ENST00000543695	CYP19A1	P11511	503 aa	Predicted RBP	13.59	□□□□□ -0.23
LDHA-222	ENST00000543695	RFX5	P48382	616 aa	Predicted RBP	13.59	□□□□□ -0.23
LDHA-222	ENST00000543695	KIAA1211	Q6ZU35	1233 aa		13.59	□□□□□ -0.23
LDHA-222	ENST00000543695	INTS4	Q96HW7	963 aa	Known RBP	13.59	□□□□□ -0.23
LDHA-222	ENST00000543695	DIAPH3	Q9NSV4	1193 aa		13.59	□□□□□ -0.23
LDHA-222	ENST00000543695	SPEF2	Q9C093	1822 aa		13.59	□□□□□ -0.23
LDHA-222	ENST00000543695	MYH3	P11055	1940 aa		13.58	□□□□□ -0.23
LDHA-222	ENST00000543695		A0A0G2JLW4	131 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	FSD2	A1L4K1	749 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	BAG4	O95429	457 aa	Known RBP	13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	STARD3NL	O95772	234 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	CASP7	P55210	303 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	EPHA10	Q5JZY3	1008 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	EAF2	Q96CJ1	260 aa	Predicted RBP	13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	TMX3	Q96JJ7	454 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	IL25	Q9H293	177 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	SRP68	Q9UHB9	627 aa	Known RBP	13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	CHD4	Q14839	1912 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	RFX7	Q2KHR2	1363 aa		13.58	□□□□□ -0.24
LDHA-222	ENST00000543695	ZNF831	Q5JPB2	1677 aa		13.57	□□□□□ -0.24
LDHA-222	ENST00000543695	NBPF26	B4DH59	902 aa		13.57	□□□□□ -0.24
LDHA-222	ENST00000543695	C1QTNF8	P60827	252 aa		13.57	□□□□□ -0.24
LDHA-222	ENST00000543695	NBPF10	Q6P3W6	841 aa	Known RBP	13.57	□□□□□ -0.24
LDHA-222	ENST00000543695	NBPF15	Q8N660	670 aa		13.57	□□□□□ -0.24
LDHA-222	ENST00000543695	KCNB2	Q92953	911 aa		13.57	□□□□□ -0.24
LDHA-222	ENST00000543695	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.57	□□□□□ -0.24
LDHA-222	ENST00000543695	SNRK	Q9NRH2	765 aa		13.57	□□□□□ -0.24
LDHA-222	ENST00000543695	GOLGA6L3	A6NEY3	463 aa		13.56	□□□□□ -0.24
LDHA-222	ENST00000543695		H7C1W4	665 aa		13.56	□□□□□ -0.24
LDHA-222	ENST00000543695	BCS1L	Q9Y276	419 aa		13.56	□□□□□ -0.24
LDHA-222	ENST00000543695	SNX14	Q9Y5W7	946 aa		13.56	□□□□□ -0.24
LDHA-222	ENST00000543695		A0A087WZG4	1122 aa		13.55	□□□□□ -0.24
LDHA-222	ENST00000543695	DPEP1	P16444	411 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 172.2 ms