RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 ERO1AQ96HE7 468 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 NLRP3Q96P20 1036 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 BBOX1O75936 387 aa12.78□□□□□ -0.36
YBX3-211ENST00000541351 SNRPA1P09661 255 aaKnown RBP12.78□□□□□ -0.36
YBX3-211ENST00000541351 NF2P35240 595 aa12.78□□□□□ -0.36
YBX3-211ENST00000541351 MTHFSDQ2M296 383 aaKnown RBP12.78□□□□□ -0.36
YBX3-211ENST00000541351 MORC1Q86VD1 984 aa12.78□□□□□ -0.36
YBX3-211ENST00000541351 GAS2L2Q8NHY3 880 aa12.78□□□□□ -0.36
YBX3-211ENST00000541351 ARMC5Q96C12 935 aa12.78□□□□□ -0.36
YBX3-211ENST00000541351 RBBP6Q7Z6E9 1792 aaKnown RBP12.78□□□□□ -0.36
YBX3-211ENST00000541351 BTBD11A6QL63 1104 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 GNAT3A8MTJ3 354 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 H0YGN5 161 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 EN2P19622 333 aaPredicted RBP12.77□□□□□ -0.37
YBX3-211ENST00000541351 INHBEP58166 350 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 KIF4BQ2VIQ3 1234 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 RBM26Q5T8P6 1007 aaKnown RBP12.77□□□□□ -0.37
YBX3-211ENST00000541351 OTOP1Q7RTM1 612 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 NUTM1Q86Y26 1132 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 SP8Q8IXZ3 490 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 NECTIN2Q92692 538 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 GGA3Q9NZ52 723 aa12.77□□□□□ -0.37
YBX3-211ENST00000541351 PAPPA2Q9BXP8 1791 aa12.76□□□□□ -0.37
YBX3-211ENST00000541351 MKI67P46013 3256 aaKnown RBP12.76□□□□□ -0.37
YBX3-211ENST00000541351 A0A1W2PPC1 479 aa12.76□□□□□ -0.37
YBX3-211ENST00000541351 ERVV-1B6SEH8 477 aa12.76□□□□□ -0.37
YBX3-211ENST00000541351 TMC4Q7Z404 712 aa12.76□□□□□ -0.37
YBX3-211ENST00000541351 PPP1R42Q7Z4L9 355 aa12.76□□□□□ -0.37
YBX3-211ENST00000541351 PTPN22Q9Y2R2 807 aa12.76□□□□□ -0.37
YBX3-211ENST00000541351 ABCC12Q96J65 1359 aa12.76□□□□□ -0.37
YBX3-211ENST00000541351 TTLL12Q14166 644 aaPredicted RBP12.75□□□□□ -0.37
YBX3-211ENST00000541351 SLC4A8Q2Y0W8 1093 aa12.75□□□□□ -0.37
YBX3-211ENST00000541351 DLK2Q6UY11 383 aa12.75□□□□□ -0.37
YBX3-211ENST00000541351 KIF6Q6ZMV9 814 aa12.75□□□□□ -0.37
YBX3-211ENST00000541351 USP16Q9Y5T5 823 aa12.75□□□□□ -0.37
YBX3-211ENST00000541351 CEP290O15078 2479 aa12.74□□□□□ -0.37
YBX3-211ENST00000541351 PSMD14O00487 310 aa12.74□□□□□ -0.37
YBX3-211ENST00000541351 HMOX1P09601 288 aa12.74□□□□□ -0.37
YBX3-211ENST00000541351 RBM27Q9P2N5 1060 aaKnown RBP12.74□□□□□ -0.37
YBX3-211ENST00000541351 ZBTB12Q9Y330 459 aaPredicted RBP12.74□□□□□ -0.37
YBX3-211ENST00000541351 A0A0C4DFX4 3053 aa12.74□□□□□ -0.37
YBX3-211ENST00000541351 OTUD7BQ6GQQ9 843 aa12.73□□□□□ -0.37
YBX3-211ENST00000541351 EFCC1Q9HA90 598 aa12.73□□□□□ -0.37
YBX3-211ENST00000541351 NR2E3Q9Y5X4 410 aa12.73□□□□□ -0.37
YBX3-211ENST00000541351 SHTN1A0MZ66 631 aa12.72□□□□□ -0.37
YBX3-211ENST00000541351 YDJCA8MPS7 323 aa12.72□□□□□ -0.37
YBX3-211ENST00000541351 PIP4K2AP48426 406 aaPredicted RBP12.72□□□□□ -0.37
YBX3-211ENST00000541351 HLFQ16534 295 aa12.72□□□□□ -0.37
YBX3-211ENST00000541351 WASHC4Q2M389 1173 aa12.72□□□□□ -0.37
YBX3-211ENST00000541351 PARP10Q53GL7 1025 aa12.72□□□□□ -0.37
YBX3-211ENST00000541351 DPF3Q92784 378 aa12.72□□□□□ -0.37
YBX3-211ENST00000541351 EYA3Q99504 573 aa12.72□□□□□ -0.37
YBX3-211ENST00000541351 HTATIP2Q9BUP3 242 aa12.72□□□□□ -0.37
YBX3-211ENST00000541351 MANSC4A6NHS7 340 aaPredicted RBP12.71□□□□□ -0.37
YBX3-211ENST00000541351 SLC9C1Q4G0N8 1177 aa12.71□□□□□ -0.37
YBX3-211ENST00000541351 DDX46Q7L014 1031 aaKnown RBP12.71□□□□□ -0.37
YBX3-211ENST00000541351 ARMC9Q7Z3E5 817 aa12.71□□□□□ -0.37
YBX3-211ENST00000541351 SZT2Q5T011 3432 aa12.71□□□□□ -0.37
YBX3-211ENST00000541351 ABCC4O15439 1325 aa12.7□□□□□ -0.38
YBX3-211ENST00000541351 ANGEL2Q5VTE6 544 aaKnown RBP12.7□□□□□ -0.38
YBX3-211ENST00000541351 GPR153Q6NV75 609 aa12.7□□□□□ -0.38
YBX3-211ENST00000541351 IL17REQ8NFR9 667 aa12.7□□□□□ -0.38
YBX3-211ENST00000541351 ZNF333Q96JL9 665 aa12.7□□□□□ -0.38
YBX3-211ENST00000541351 POLR3GLQ9BT43 218 aa12.7□□□□□ -0.38
YBX3-211ENST00000541351 MAP3K15Q6ZN16 1313 aa12.69□□□□□ -0.38
YBX3-211ENST00000541351 POLR2AP24928 1970 aaKnown RBP12.69□□□□□ -0.38
YBX3-211ENST00000541351 G3V3G9 751 aa12.69□□□□□ -0.38
YBX3-211ENST00000541351 UBE2Q2LH0YL09 131 aa12.69□□□□□ -0.38
YBX3-211ENST00000541351 EGFRP00533 1210 aa12.69□□□□□ -0.38
YBX3-211ENST00000541351 SCARF1Q14162 830 aa12.69□□□□□ -0.38
YBX3-211ENST00000541351 DCAF8Q5TAQ9 597 aa12.69□□□□□ -0.38
YBX3-211ENST00000541351 DIAPH1O60610 1272 aaKnown RBP12.68□□□□□ -0.38
YBX3-211ENST00000541351 GPTP24298 496 aa12.68□□□□□ -0.38
YBX3-211ENST00000541351 AGBL3Q8NEM8 1001 aa12.68□□□□□ -0.38
YBX3-211ENST00000541351 NKX2-3Q8TAU0 364 aa12.68□□□□□ -0.38
YBX3-211ENST00000541351 DBNDD1Q9H9R9 158 aa12.68□□□□□ -0.38
YBX3-211ENST00000541351 CEMIPQ8WUJ3 1361 aa12.68□□□□□ -0.38
YBX3-211ENST00000541351 NBPF26B4DH59 902 aa12.67□□□□□ -0.38
YBX3-211ENST00000541351 NTSR2O95665 410 aa12.67□□□□□ -0.38
YBX3-211ENST00000541351 SP3Q02447 781 aa12.67□□□□□ -0.38
YBX3-211ENST00000541351 MKRN3Q13064 507 aaKnown RBP12.67□□□□□ -0.38
YBX3-211ENST00000541351 GRAPQ13588 217 aa12.67□□□□□ -0.38
YBX3-211ENST00000541351 SLC10A5Q5PT55 438 aa12.67□□□□□ -0.38
YBX3-211ENST00000541351 SUSD4Q5VX71 490 aa12.67□□□□□ -0.38
YBX3-211ENST00000541351 NBPF10Q6P3W6 841 aaKnown RBP12.67□□□□□ -0.38
YBX3-211ENST00000541351 IFNL1Q8IU54 200 aa12.67□□□□□ -0.38
YBX3-211ENST00000541351 GRAPLQ8TC17 118 aaPredicted RBP12.67□□□□□ -0.38
YBX3-211ENST00000541351 RTF1Q92541 710 aaKnown RBP12.67□□□□□ -0.38
YBX3-211ENST00000541351 UTP14AQ9BVJ6 771 aaKnown RBP12.67□□□□□ -0.38
YBX3-211ENST00000541351 ZNF609O15014 1411 aa12.67□□□□□ -0.38
YBX3-211ENST00000541351 C6orf229H3BNL8 230 aa12.66□□□□□ -0.38
YBX3-211ENST00000541351 ECE2O60344 883 aa12.66□□□□□ -0.38
YBX3-211ENST00000541351 VIL1P09327 827 aaKnown RBP12.66□□□□□ -0.38
YBX3-211ENST00000541351 ZBTB48P10074 688 aaPredicted RBP12.66□□□□□ -0.38
YBX3-211ENST00000541351 CD99L2Q8TCZ2 262 aa12.66□□□□□ -0.38
YBX3-211ENST00000541351 COL25A1Q9BXS0 654 aaPredicted RBP12.66□□□□□ -0.38
YBX3-211ENST00000541351 STXBP5LQ9Y2K9 1186 aa12.66□□□□□ -0.38
YBX3-211ENST00000541351 KNSTRNQ9Y448 316 aa12.66□□□□□ -0.38
YBX3-211ENST00000541351 KCNQ3O43525 872 aa12.65□□□□□ -0.38
YBX3-211ENST00000541351 ZNF280AP59817 542 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms