RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 BICC1Q9H694 974 aaKnown RBP13.25□□□□□ -0.29
SYNE1-237ENST00000539504 CGNQ9P2M7 1197 aaKnown RBP13.25□□□□□ -0.29
SYNE1-237ENST00000539504 SPATA31D1Q6ZQQ2 1576 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 PTPN14Q15678 1187 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 CFAP45Q9UL16 551 aa13.25□□□□□ -0.29
SYNE1-237ENST00000539504 ALDH1L1O75891 902 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 SASH1O94885 1247 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 ZRSR1Q15695 479 aaKnown RBP13.24□□□□□ -0.29
SYNE1-237ENST00000539504 KSR2Q6VAB6 950 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 DNAJC2Q99543 621 aaKnown RBP13.24□□□□□ -0.29
SYNE1-237ENST00000539504 AKAP12Q02952 1782 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 SKILP12757 684 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 C1orf141Q5JVX7 400 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 USP16Q9Y5T5 823 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 NDUFB9Q9Y6M9 179 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.24□□□□□ -0.29
SYNE1-237ENST00000539504 ADCY9O60503 1353 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 GRM8O00222 908 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 KINO60870 393 aaKnown RBP13.24□□□□□ -0.29
SYNE1-237ENST00000539504 MTX1Q13505 466 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 Q6ZUG5 572 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 CCAR1Q8IX12 1150 aaKnown RBP13.24□□□□□ -0.29
SYNE1-237ENST00000539504 NEK1Q96PY6 1258 aa13.24□□□□□ -0.29
SYNE1-237ENST00000539504 NRXN3Q9Y4C0 1643 aa13.23□□□□□ -0.29
SYNE1-237ENST00000539504 NBPF6Q5VWK0 638 aa13.23□□□□□ -0.29
SYNE1-237ENST00000539504 RIC3Q7Z5B4 369 aa13.23□□□□□ -0.29
SYNE1-237ENST00000539504 NBPF4Q96M43 638 aa13.23□□□□□ -0.29
SYNE1-237ENST00000539504 SETD1AO15047 1707 aaKnown RBP13.23□□□□□ -0.29
SYNE1-237ENST00000539504 HOXB7P09629 217 aa13.23□□□□□ -0.29
SYNE1-237ENST00000539504 DDX58O95786 925 aaKnown RBP13.23□□□□□ -0.29
SYNE1-237ENST00000539504 GUCY1B3Q02153 619 aa13.23□□□□□ -0.29
SYNE1-237ENST00000539504 C11orf57Q6ZUT1 292 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-237ENST00000539504 HMG20BQ9P0W2 317 aa13.23□□□□□ -0.29
SYNE1-237ENST00000539504 PRAMEF22A3QJZ6 481 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 KRT32Q14532 448 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 CCDC129Q6ZRS4 1044 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 ERCC4Q92889 916 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-237ENST00000539504 LRRC59Q96AG4 307 aaKnown RBP13.22□□□□□ -0.29
SYNE1-237ENST00000539504 FTOQ9C0B1 505 aaKnown RBP eCLIP13.22□□□□□ -0.29
SYNE1-237ENST00000539504 ME1P48163 572 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 CEBPAP49715 358 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-237ENST00000539504 STX1AQ16623 288 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 LRRC8AQ8IWT6 810 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 CTNNA3Q9UI47 895 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 TAOK2Q9UL54 1235 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 CCDC69A6NI79 296 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 USP27XA6NNY8 438 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 PLEKHO1Q53GL0 409 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-237ENST00000539504 LMOD2Q6P5Q4 547 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 GTF3C6Q969F1 213 aa13.22□□□□□ -0.29
SYNE1-237ENST00000539504 XRN1Q8IZH2 1706 aaKnown RBP13.22□□□□□ -0.29
SYNE1-237ENST00000539504 SDF4Q9BRK5 362 aa13.21□□□□□ -0.29
SYNE1-237ENST00000539504 PODXL2Q9NZ53 605 aa13.21□□□□□ -0.29
SYNE1-237ENST00000539504 ZNF215Q9UL58 517 aaPredicted RBP13.21□□□□□ -0.29
SYNE1-237ENST00000539504 ADAMTS13Q76LX8 1427 aa13.21□□□□□ -0.29
SYNE1-237ENST00000539504 CAVIN2O95810 425 aa13.21□□□□□ -0.29
SYNE1-237ENST00000539504 CCT2P78371 535 aaKnown RBP13.21□□□□□ -0.29
SYNE1-237ENST00000539504 RESTQ13127 1097 aa13.21□□□□□ -0.29
SYNE1-237ENST00000539504 LINS1Q8NG48 757 aa13.21□□□□□ -0.29
SYNE1-237ENST00000539504 ZSCAN16Q9H4T2 348 aaPredicted RBP13.21□□□□□ -0.29
SYNE1-237ENST00000539504 RGPD1P0DJD0 1748 aa13.21□□□□□ -0.29
SYNE1-237ENST00000539504 TAF5LO75529 589 aa13.21□□□□□ -0.3
SYNE1-237ENST00000539504 MYL6BP14649 208 aa13.21□□□□□ -0.3
SYNE1-237ENST00000539504 NEXNQ0ZGT2 675 aa13.2□□□□□ -0.3
SYNE1-237ENST00000539504 FMNL2Q96PY5 1086 aa13.2□□□□□ -0.3
SYNE1-237ENST00000539504 SEC62Q99442 399 aaKnown RBP13.2□□□□□ -0.3
SYNE1-237ENST00000539504 NEMFO60524 1076 aa13.2□□□□□ -0.3
SYNE1-237ENST00000539504 RBM43Q6ZSC3 357 aaKnown RBP13.2□□□□□ -0.3
SYNE1-237ENST00000539504 CEP57L1Q8IYX8 460 aa13.2□□□□□ -0.3
SYNE1-237ENST00000539504 AOPEPQ8N6M6 819 aa13.2□□□□□ -0.3
SYNE1-237ENST00000539504 FSIP1Q8NA03 581 aa13.2□□□□□ -0.3
SYNE1-237ENST00000539504 ANO10Q9NW15 660 aa13.2□□□□□ -0.3
SYNE1-237ENST00000539504 TUBGCP6Q96RT7 1819 aa13.19□□□□□ -0.3
SYNE1-237ENST00000539504 CHGBP05060 677 aa13.19□□□□□ -0.3
SYNE1-237ENST00000539504 SF3A1Q15459 793 aaKnown RBP13.19□□□□□ -0.3
SYNE1-237ENST00000539504 FAM208AQ9UK61 1670 aaKnown RBP13.19□□□□□ -0.3
SYNE1-237ENST00000539504 CTAGE5O15320 804 aa13.19□□□□□ -0.3
SYNE1-237ENST00000539504 SYCP1Q15431 976 aa13.19□□□□□ -0.3
SYNE1-237ENST00000539504 AKAP4Q5JQC9 854 aa13.19□□□□□ -0.3
SYNE1-237ENST00000539504 KIF18AQ8NI77 898 aa13.19□□□□□ -0.3
SYNE1-237ENST00000539504 GIGYF1O75420 1035 aaPredicted RBP13.19□□□□□ -0.3
SYNE1-237ENST00000539504 SMC2O95347 1197 aa13.19□□□□□ -0.3
SYNE1-237ENST00000539504 DDX46Q7L014 1031 aaKnown RBP13.19□□□□□ -0.3
SYNE1-237ENST00000539504 IQCB1Q15051 598 aa13.18□□□□□ -0.3
SYNE1-237ENST00000539504 ELF2Q15723 593 aa13.18□□□□□ -0.3
SYNE1-237ENST00000539504 DDX41Q9UJV9 622 aaKnown RBP13.18□□□□□ -0.3
SYNE1-237ENST00000539504 SCRN1Q12765 414 aa13.18□□□□□ -0.3
SYNE1-237ENST00000539504 IP6K1Q92551 441 aa13.18□□□□□ -0.3
SYNE1-237ENST00000539504 SYTL4Q96C24 671 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-237ENST00000539504 MRFAP1L1Q96HT8 127 aa13.18□□□□□ -0.3
SYNE1-237ENST00000539504 ZNF396Q96N95 335 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-237ENST00000539504 U3KPZ7 1027 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-237ENST00000539504 PTPRUQ92729 1446 aa13.18□□□□□ -0.3
SYNE1-237ENST00000539504 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-237ENST00000539504 APOBRQ0VD83 1088 aa13.18□□□□□ -0.3
SYNE1-237ENST00000539504 ZNF397Q8NF99 534 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-237ENST00000539504 USP28Q96RU2 1077 aa13.18□□□□□ -0.3
SYNE1-237ENST00000539504 NAT10Q9H0A0 1025 aaKnown RBP13.18□□□□□ -0.3
SYNE1-237ENST00000539504 CEMIPQ8WUJ3 1361 aa13.17□□□□□ -0.3
SYNE1-237ENST00000539504 CDC25BP30305 580 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms