RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 TEX35Q5T0J7 233 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 G2E3Q7L622 706 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 NME9Q86XW9 330 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 PI4K2BQ8TCG2 481 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 KCNB2Q92953 911 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 ZC3H4Q9UPT8 1303 aaKnown RBP10.59□□□□□ -0.71
SNHG1-209ENST00000538654 TRIM66O15016 1216 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 CTAGE5O15320 804 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 LARGE1O95461 756 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 ZKSCAN1P17029 563 aaPredicted RBP10.59□□□□□ -0.71
SNHG1-209ENST00000538654 GSDMDP57764 484 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 ANKRD1Q15327 319 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 ELF2Q15723 593 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 SULT6B1Q6IMI4 303 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 FNBP4Q8N3X1 1017 aaPredicted RBP10.59□□□□□ -0.71
SNHG1-209ENST00000538654 NME8Q8N427 588 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 SSH3Q8TE77 659 aa10.59□□□□□ -0.71
SNHG1-209ENST00000538654 JAKMIP1Q96N16 626 aaKnown RBP10.59□□□□□ -0.71
SNHG1-209ENST00000538654 AK7Q96M32 723 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 TSPYL4Q9UJ04 414 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 SERPINA10Q9UK55 444 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 CHMP3Q9Y3E7 222 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 MAP3K5Q99683 1374 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 ERICH4A6NGS2 130 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 UBTFL1P0CB47 393 aaPredicted RBP10.58□□□□□ -0.72
SNHG1-209ENST00000538654 CCDC144BQ3MJ40 725 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 CCDC30Q5VVM6 783 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 CCDC144CPQ8IYA2 1237 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 CCAR2Q8N163 923 aaKnown RBP10.58□□□□□ -0.72
SNHG1-209ENST00000538654 LARP6Q9BRS8 491 aaKnown RBP10.58□□□□□ -0.72
SNHG1-209ENST00000538654 DNAJC25Q9H1X3 360 aa10.58□□□□□ -0.72
SNHG1-209ENST00000538654 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.58□□□□□ -0.72
SNHG1-209ENST00000538654 LRRFIP2Q9Y608 721 aaKnown RBP10.58□□□□□ -0.72
SNHG1-209ENST00000538654 FAM208AQ9UK61 1670 aaKnown RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 GIGYF1O75420 1035 aaPredicted RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 H2AFXP16104 143 aaPredicted RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 PSMA5P28066 241 aa10.57□□□□□ -0.72
SNHG1-209ENST00000538654 NUTM1Q86Y26 1132 aa10.57□□□□□ -0.72
SNHG1-209ENST00000538654 CDCA7Q9BWT1 371 aaPredicted RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 PLSCR2Q9NRY7 297 aa10.57□□□□□ -0.72
SNHG1-209ENST00000538654 ARGLU1Q9NWB6 273 aaPredicted RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 SETD1AO15047 1707 aaKnown RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 TTC41PQ6P2S7 1318 aa10.57□□□□□ -0.72
SNHG1-209ENST00000538654 RRS1Q15050 365 aaKnown RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 STX1AQ16623 288 aa10.57□□□□□ -0.72
SNHG1-209ENST00000538654 ME3Q16798 604 aa10.57□□□□□ -0.72
SNHG1-209ENST00000538654 CWC27Q6UX04 472 aaKnown RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 BICD2Q8TD16 824 aa10.57□□□□□ -0.72
SNHG1-209ENST00000538654 LEO1Q8WVC0 666 aaPredicted RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 IL1RAPL2Q9NP60 686 aa10.57□□□□□ -0.72
SNHG1-209ENST00000538654 USP42Q9H9J4 1324 aaKnown RBP10.57□□□□□ -0.72
SNHG1-209ENST00000538654 CCDC69A6NI79 296 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 VGLL3A8MV65 326 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 GLRX3O76003 335 aaKnown RBP10.56□□□□□ -0.72
SNHG1-209ENST00000538654 TPM4P67936 248 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 EIF4A2Q14240 407 aaKnown RBP10.56□□□□□ -0.72
SNHG1-209ENST00000538654 CDC37L1Q7L3B6 337 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 FILIP1Q7Z7B0 1213 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 RHPN1Q8TCX5 695 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 L2HGDHQ9H9P8 463 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 C3P01024 1663 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 NRDCO43847 1150 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 SURF6O75683 361 aaKnown RBP10.56□□□□□ -0.72
SNHG1-209ENST00000538654 TXLNBQ8N3L3 684 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 IMPACTQ9P2X3 320 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 AKAP12Q02952 1782 aa10.56□□□□□ -0.72
SNHG1-209ENST00000538654 BECN2A8MW95 431 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 RFX1P22670 979 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 IQCB1Q15051 598 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 ALDH8A1Q9H2A2 487 aaPredicted RBP10.55□□□□□ -0.72
SNHG1-209ENST00000538654 SPG7Q9UQ90 795 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 RGPD1P0DJD0 1748 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 USP27XA6NNY8 438 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 ATP8B1O43520 1251 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 CPA1P15085 419 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 KCNJ6P48051 423 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 CCZ1BP86790 482 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 CCZ1P86791 482 aaPredicted RBP10.55□□□□□ -0.72
SNHG1-209ENST00000538654 SNW1Q13573 536 aaKnown RBP10.55□□□□□ -0.72
SNHG1-209ENST00000538654 PRPF40BQ6NWY9 871 aaKnown RBP10.55□□□□□ -0.72
SNHG1-209ENST00000538654 DRC1Q96MC2 740 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 ZNF446Q9NWS9 450 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.55□□□□□ -0.72
SNHG1-209ENST00000538654 CFAP45Q9UL16 551 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 V9GYY5 206 aaPredicted RBP10.55□□□□□ -0.72
SNHG1-209ENST00000538654 SPATA31D1Q6ZQQ2 1576 aa10.55□□□□□ -0.72
SNHG1-209ENST00000538654 HIP1O00291 1037 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 CCP110O43303 1012 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 PPFIA4O75335 1185 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 NR1I2O75469 434 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 PARNO95453 639 aaKnown RBP10.54□□□□□ -0.72
SNHG1-209ENST00000538654 TPM1P09493 284 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 ST3GAL1Q11201 340 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 FERMT3Q86UX7 667 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.54□□□□□ -0.72
SNHG1-209ENST00000538654 RPS6KL1Q9Y6S9 549 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 PSDA5PKW4 1024 aaPredicted RBP10.54□□□□□ -0.72
SNHG1-209ENST00000538654 GPS2Q13227 327 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 NAT10Q9H0A0 1025 aaKnown RBP10.54□□□□□ -0.72
SNHG1-209ENST00000538654 TPCN1Q9ULQ1 816 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms