RNA–Protein interactions for RNA: ENST00000529714.5

SMCO4-205, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

TSL 3

Gene SMCO4, Length 355 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-205ENST00000529714 RPAP2Q8IXW5 612 aaPredicted RBP17.06■□□□□ 0.32
SMCO4-205ENST00000529714 CCDC24Q8N4L8 307 aa17.06■□□□□ 0.32
SMCO4-205ENST00000529714 LMBR1LQ6UX01 489 aa17.05■□□□□ 0.32
SMCO4-205ENST00000529714 C1orf115Q9H7X2 142 aa17.05■□□□□ 0.32
SMCO4-205ENST00000529714 COL11A2P13942 1736 aaPredicted RBP17.04■□□□□ 0.32
SMCO4-205ENST00000529714 LRP5O75197 1615 aa17.04■□□□□ 0.32
SMCO4-205ENST00000529714 CEP85Q6P2H3 762 aa17.04■□□□□ 0.32
SMCO4-205ENST00000529714 C3orf67Q6ZVT6 689 aa17.04■□□□□ 0.32
SMCO4-205ENST00000529714 CD2APQ9Y5K6 639 aa17.04■□□□□ 0.32
SMCO4-205ENST00000529714 DLEC1Q9Y238 1755 aa17.04■□□□□ 0.32
SMCO4-205ENST00000529714 HOXA10P31260 410 aaPredicted RBP17.03■□□□□ 0.32
SMCO4-205ENST00000529714 ATP8B2P98198 1209 aa17.03■□□□□ 0.32
SMCO4-205ENST00000529714 KIAA1551Q9HCM1 1747 aa17.03■□□□□ 0.32
SMCO4-205ENST00000529714 HMMRO75330 724 aa17.02■□□□□ 0.32
SMCO4-205ENST00000529714 SRGNP10124 158 aa17.02■□□□□ 0.32
SMCO4-205ENST00000529714 TGFB2P61812 414 aa17.02■□□□□ 0.32
SMCO4-205ENST00000529714 FAM161AQ3B820 660 aa17.02■□□□□ 0.32
SMCO4-205ENST00000529714 SSH3Q8TE77 659 aa17.02■□□□□ 0.32
SMCO4-205ENST00000529714 GREM2Q9H772 168 aa17.02■□□□□ 0.32
SMCO4-205ENST00000529714 PCDHB15Q9Y5E8 787 aa17.02■□□□□ 0.32
SMCO4-205ENST00000529714 H0YIN7 160 aa17.01■□□□□ 0.31
SMCO4-205ENST00000529714 SRGAP3O43295 1099 aa17.01■□□□□ 0.31
SMCO4-205ENST00000529714 NPR1P16066 1061 aa17.01■□□□□ 0.31
SMCO4-205ENST00000529714 IFIT5Q13325 482 aaKnown RBP17.01■□□□□ 0.31
SMCO4-205ENST00000529714 POLA2Q14181 598 aa17.01■□□□□ 0.31
SMCO4-205ENST00000529714 CCDC57Q2TAC2 916 aa17.01■□□□□ 0.31
SMCO4-205ENST00000529714 RPGRQ92834 1020 aaKnown RBP17.01■□□□□ 0.31
SMCO4-205ENST00000529714 CHMP3Q9Y3E7 222 aa17.01■□□□□ 0.31
SMCO4-205ENST00000529714 PNMA6EA0A0J9YXQ4 647 aa17■□□□□ 0.31
SMCO4-205ENST00000529714 ANKRD18BA2A2Z9 1011 aa17■□□□□ 0.31
SMCO4-205ENST00000529714 ITGA6P23229 1130 aa17■□□□□ 0.31
SMCO4-205ENST00000529714 STYK1Q6J9G0 422 aa17■□□□□ 0.31
SMCO4-205ENST00000529714 DDX46Q7L014 1031 aaKnown RBP17■□□□□ 0.31
SMCO4-205ENST00000529714 C2CD5Q86YS7 1000 aa17■□□□□ 0.31
SMCO4-205ENST00000529714 MASTLQ96GX5 879 aa17■□□□□ 0.31
SMCO4-205ENST00000529714 RBM17Q96I25 401 aaKnown RBP17■□□□□ 0.31
SMCO4-205ENST00000529714 CRAMP1Q96RY5 1269 aa17■□□□□ 0.31
SMCO4-205ENST00000529714 CDC5LQ99459 802 aaKnown RBP17■□□□□ 0.31
SMCO4-205ENST00000529714 RFX5P48382 616 aaPredicted RBP16.99■□□□□ 0.31
SMCO4-205ENST00000529714 SIRT2Q8IXJ6 389 aa16.99■□□□□ 0.31
SMCO4-205ENST00000529714 ALDH1B1P30837 517 aa16.98■□□□□ 0.31
SMCO4-205ENST00000529714 HDAC1Q13547 482 aaPredicted RBP16.98■□□□□ 0.31
SMCO4-205ENST00000529714 CCDC85AQ96PX6 553 aaPredicted RBP16.98■□□□□ 0.31
SMCO4-205ENST00000529714 COPRSQ9NQ92 184 aa16.98■□□□□ 0.31
SMCO4-205ENST00000529714 FBXO3Q9UK99 471 aa16.98■□□□□ 0.31
SMCO4-205ENST00000529714 BRCA1P38398 1863 aaKnown RBP16.97■□□□□ 0.31
SMCO4-205ENST00000529714 PTPN12Q05209 780 aaKnown RBP16.97■□□□□ 0.31
SMCO4-205ENST00000529714 GRAPQ13588 217 aa16.97■□□□□ 0.31
SMCO4-205ENST00000529714 GRAPLQ8TC17 118 aaPredicted RBP16.97■□□□□ 0.31
SMCO4-205ENST00000529714 SEC31BQ9NQW1 1179 aa16.97■□□□□ 0.31
SMCO4-205ENST00000529714 PPP1R1BQ9UD71 204 aaPredicted RBP16.97■□□□□ 0.31
SMCO4-205ENST00000529714 BBOX1O75936 387 aa16.96■□□□□ 0.31
SMCO4-205ENST00000529714 CHRNA5P30532 468 aa16.96■□□□□ 0.31
SMCO4-205ENST00000529714 RPS8P62241 208 aaKnown RBP16.96■□□□□ 0.31
SMCO4-205ENST00000529714 TMC4Q7Z404 712 aa16.96■□□□□ 0.31
SMCO4-205ENST00000529714 ANKRD18AQ8IVF6 992 aa16.96■□□□□ 0.31
SMCO4-205ENST00000529714 CNKSR1Q969H4 720 aa16.96■□□□□ 0.31
SMCO4-205ENST00000529714 NOP58Q9Y2X3 529 aaKnown RBP16.96■□□□□ 0.31
SMCO4-205ENST00000529714 TAF1P21675 1872 aa16.96■□□□□ 0.31
SMCO4-205ENST00000529714 DPEP1P16444 411 aa16.95■□□□□ 0.3
SMCO4-205ENST00000529714 KCNA3P22001 575 aa16.95■□□□□ 0.3
SMCO4-205ENST00000529714 IGHMBP2P38935 993 aaKnown RBP16.95■□□□□ 0.3
SMCO4-205ENST00000529714 TAF7LQ5H9L4 462 aa16.95■□□□□ 0.3
SMCO4-205ENST00000529714 CELF1Q92879 486 aaKnown RBP16.95■□□□□ 0.3
SMCO4-205ENST00000529714 FHDC1Q9C0D6 1143 aaPredicted RBP16.95■□□□□ 0.3
SMCO4-205ENST00000529714 RWDD1Q9H446 243 aaPredicted RBP16.95■□□□□ 0.3
SMCO4-205ENST00000529714 SPEF2Q9C093 1822 aa16.95■□□□□ 0.3
SMCO4-205ENST00000529714 COL4A1P02462 1669 aa16.94■□□□□ 0.3
SMCO4-205ENST00000529714 LRRC37AA6NMS7 1700 aa16.94■□□□□ 0.3
SMCO4-205ENST00000529714 A0A0G2JLW4 131 aa16.94■□□□□ 0.3
SMCO4-205ENST00000529714 CIAO1O76071 339 aa16.94■□□□□ 0.3
SMCO4-205ENST00000529714 KLHL34Q8N239 644 aa16.94■□□□□ 0.3
SMCO4-205ENST00000529714 ZNF622Q969S3 477 aaKnown RBP eCLIP16.94■□□□□ 0.3
SMCO4-205ENST00000529714 MPHOSPH8Q99549 860 aa16.94■□□□□ 0.3
SMCO4-205ENST00000529714 BSDC1Q9NW68 430 aaPredicted RBP16.94■□□□□ 0.3
SMCO4-205ENST00000529714 CACNA1SQ13698 1873 aa16.93■□□□□ 0.3
SMCO4-205ENST00000529714 EYA2O00167 538 aa16.93■□□□□ 0.3
SMCO4-205ENST00000529714 HSP90AB4PQ58FF6 505 aa16.93■□□□□ 0.3
SMCO4-205ENST00000529714 LDHAL6AQ6ZMR3 332 aa16.93■□□□□ 0.3
SMCO4-205ENST00000529714 TTLL6Q8N841 843 aa16.93■□□□□ 0.3
SMCO4-205ENST00000529714 ZNF594Q96JF6 807 aaPredicted RBP16.93■□□□□ 0.3
SMCO4-205ENST00000529714 DCTPP1Q9H773 170 aa16.93■□□□□ 0.3
SMCO4-205ENST00000529714 PPP4R2Q9NY27 417 aa16.93■□□□□ 0.3
SMCO4-205ENST00000529714 PIM2Q9P1W9 311 aa16.93■□□□□ 0.3
SMCO4-205ENST00000529714 SURF6O75683 361 aaKnown RBP16.92■□□□□ 0.3
SMCO4-205ENST00000529714 KLHDC4Q8TBB5 520 aa16.92■□□□□ 0.3
SMCO4-205ENST00000529714 SYT17Q9BSW7 474 aa16.92■□□□□ 0.3
SMCO4-205ENST00000529714 PA2G4Q9UQ80 394 aaKnown RBP16.92■□□□□ 0.3
SMCO4-205ENST00000529714 SLX4Q8IY92 1834 aa16.91■□□□□ 0.3
SMCO4-205ENST00000529714 PPEF1O14829 653 aaPredicted RBP16.91■□□□□ 0.3
SMCO4-205ENST00000529714 IL15P40933 162 aaPredicted RBP16.91■□□□□ 0.3
SMCO4-205ENST00000529714 G3BP1Q13283 466 aaKnown RBP eCLIP16.91■□□□□ 0.3
SMCO4-205ENST00000529714 PRPF40BQ6NWY9 871 aaKnown RBP16.91■□□□□ 0.3
SMCO4-205ENST00000529714 NLGN2Q8NFZ4 835 aa16.91■□□□□ 0.3
SMCO4-205ENST00000529714 GCC1Q96CN9 775 aa16.91■□□□□ 0.3
SMCO4-205ENST00000529714 CNNM1Q9NRU3 951 aa16.91■□□□□ 0.3
SMCO4-205ENST00000529714 ATP6V0A2Q9Y487 856 aa16.91■□□□□ 0.3
SMCO4-205ENST00000529714 RIPOR2Q9Y4F9 1068 aa16.91■□□□□ 0.3
SMCO4-205ENST00000529714 A0A1B0GUL6 1792 aa16.9■□□□□ 0.3
SMCO4-205ENST00000529714 RAB11FIP3O75154 756 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms