RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 MAP3K11Q16584 847 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 SLC26A8Q96RN1 970 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 ST7Q9NRC1 585 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 LIMCH1Q9UPQ0 1083 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 FECHP22830 423 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 BRD2P25440 801 aaKnown RBP9.85□□□□□ -0.83
CSMD1-213ENST00000523488 CORO7P57737 925 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 PTPN14Q15678 1187 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 TICAM2Q86XR7 235 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 TMEM139Q8IV31 216 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 MED4Q9NPJ6 270 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 NRBP1Q9UHY1 535 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 CHMP3Q9Y3E7 222 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.85□□□□□ -0.83
CSMD1-213ENST00000523488 CARMIL3Q8ND23 1372 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 MAP3K15Q6ZN16 1313 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 CLGNO14967 610 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 GNAI3P08754 354 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 LMOD3Q0VAK6 560 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 ELF2Q15723 593 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 ATL3Q6DD88 541 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 C8orf58Q8NAV2 365 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 HAP1P54257 671 aaPredicted RBP9.84□□□□□ -0.83
CSMD1-213ENST00000523488 MSANTD4Q8NCY6 345 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 MED23Q9ULK4 1368 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 GOLGA6L4A6NEF3 574 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 SYT10Q6XYQ8 523 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 STAG1Q8WVM7 1258 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 SMARCE1Q969G3 411 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 PPP1R13BQ96KQ4 1090 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 DONSONQ9NYP3 566 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 DNAI1Q9UI46 699 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 LCMT1Q9UIC8 334 aa9.84□□□□□ -0.83
CSMD1-213ENST00000523488 ZC3H4Q9UPT8 1303 aaKnown RBP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 C1orf167Q5SNV9 1468 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 SNW1Q13573 536 aaKnown RBP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 NOM1Q5C9Z4 860 aaKnown RBP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 CC2D1AQ6P1N0 951 aaPredicted RBP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 FBXL16Q8N461 479 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 MYCBPQ99417 103 aaPredicted RBP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 ARGLU1Q9NWB6 273 aaPredicted RBP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 STK26Q9P289 416 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 PARP3Q9Y6F1 533 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 SALL1Q9NSC2 1324 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 GLI3P10071 1580 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 PTPRUQ92729 1446 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 FAM237AA0A1B0GTK4 181 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 TWISTNBQ3B726 338 aaPredicted RBP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 ELOA2Q8IYF1 753 aaPredicted RBP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 GPATCH11Q8N954 259 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 TOMM22Q9NS69 142 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 AARSP49588 968 aaKnown RBP eCLIP9.83□□□□□ -0.84
CSMD1-213ENST00000523488 MAP3K9P80192 1104 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 KRBA2Q6ZNG9 492 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 KIFC2Q96AC6 838 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 CARD10Q9BWT7 1032 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 HSD3B7Q9H2F3 369 aa9.83□□□□□ -0.84
CSMD1-213ENST00000523488 SLIT3O75094 1523 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 CTAGE5O15320 804 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 NECTIN1Q15223 517 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 CYB5RLQ6IPT4 315 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 NEK11Q8NG66 645 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 SSH3Q8TE77 659 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 CCDC189A1A4V9 331 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 ACTN2P35609 894 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 TUBB4BP68371 445 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 TRDNQ13061 729 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 FILIP1Q7Z7B0 1213 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 BABAM1Q9NWV8 329 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 EXOC6BQ9Y2D4 811 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 ELL2O00472 640 aaPredicted RBP9.82□□□□□ -0.84
CSMD1-213ENST00000523488 AK2P54819 239 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 ATP8B2P98198 1209 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 RESTQ13127 1097 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 AFAP1Q8N556 730 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 GPR161Q8N6U8 529 aaKnown RBP9.82□□□□□ -0.84
CSMD1-213ENST00000523488 CCDC191Q8NCU4 936 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 LRRN4CLQ8ND94 238 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 ANO2Q9NQ90 1003 aa9.82□□□□□ -0.84
CSMD1-213ENST00000523488 BCCIPQ9P287 314 aaKnown RBP eCLIP9.82□□□□□ -0.84
CSMD1-213ENST00000523488 RREB1Q92766 1687 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 NEO1Q92859 1461 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 LOC102724159A0A0B4J2E5 919 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 LIG1P18858 919 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 DDR1Q08345 913 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 TBX2Q13207 712 aaPredicted RBP9.81□□□□□ -0.84
CSMD1-213ENST00000523488 PWP2Q15269 919 aaKnown RBP9.81□□□□□ -0.84
CSMD1-213ENST00000523488 USPL1Q5W0Q7 1092 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 PACS2Q86VP3 889 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 PGBD1Q96JS3 809 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 PHACTR3Q96KR7 559 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 CCDC150Q8NCX0 1101 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 NUP62CLQ9H1M0 184 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 LRRFIP2Q9Y608 721 aaKnown RBP9.81□□□□□ -0.84
CSMD1-213ENST00000523488 LARGE1O95461 756 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 CCT4P50991 539 aaKnown RBP9.81□□□□□ -0.84
CSMD1-213ENST00000523488 MTX1Q13505 466 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 EMC10Q5UCC4 262 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 TMCO3Q6UWJ1 677 aa9.81□□□□□ -0.84
CSMD1-213ENST00000523488 SCAND2PQ9GZW5 306 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms