RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CHMP3Q9Y3E7 222 aa20.34■□□□□ 0.85
LSM1-204ENST00000522515 PNMA6EA0A0J9YXQ4 647 aa20.33■□□□□ 0.84
LSM1-204ENST00000522515 PDE6BP35913 854 aa20.33■□□□□ 0.84
LSM1-204ENST00000522515 ATP8B2P98198 1209 aa20.33■□□□□ 0.84
LSM1-204ENST00000522515 FAM161AQ3B820 660 aa20.33■□□□□ 0.84
LSM1-204ENST00000522515 CRY2Q49AN0 593 aa20.33■□□□□ 0.84
LSM1-204ENST00000522515 CCDC152Q4G0S7 254 aa20.33■□□□□ 0.84
LSM1-204ENST00000522515 SIRT2Q8IXJ6 389 aa20.33■□□□□ 0.84
LSM1-204ENST00000522515 GREM2Q9H772 168 aa20.33■□□□□ 0.84
LSM1-204ENST00000522515 KIF13BQ9NQT8 1826 aa20.32■□□□□ 0.84
LSM1-204ENST00000522515 RPAP2Q8IXW5 612 aaPredicted RBP20.32■□□□□ 0.84
LSM1-204ENST00000522515 SRGAP3O43295 1099 aa20.31■□□□□ 0.84
LSM1-204ENST00000522515 SEC31BQ9NQW1 1179 aa20.3■□□□□ 0.84
LSM1-204ENST00000522515 PPP1R1BQ9UD71 204 aaPredicted RBP20.3■□□□□ 0.84
LSM1-204ENST00000522515 COL11A2P13942 1736 aaPredicted RBP20.3■□□□□ 0.84
LSM1-204ENST00000522515 SRGNP10124 158 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 ITGA6P23229 1130 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 RTL9Q8NET4 1388 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 CHRNA5P30532 468 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 RFX5P48382 616 aaPredicted RBP20.29■□□□□ 0.84
LSM1-204ENST00000522515 ERICH6BQ5W0A0 696 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 C2CD5Q86YS7 1000 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 KLHL34Q8N239 644 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 SSH3Q8TE77 659 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 RPGRQ92834 1020 aaKnown RBP20.29■□□□□ 0.84
LSM1-204ENST00000522515 COL4A1P02462 1669 aa20.29■□□□□ 0.84
LSM1-204ENST00000522515 H0YIN7 160 aa20.28■□□□□ 0.84
LSM1-204ENST00000522515 IFIT5Q13325 482 aaKnown RBP20.28■□□□□ 0.84
LSM1-204ENST00000522515 POLA2Q14181 598 aa20.28■□□□□ 0.84
LSM1-204ENST00000522515 CCDC57Q2TAC2 916 aa20.28■□□□□ 0.84
LSM1-204ENST00000522515 CD2APQ9Y5K6 639 aa20.28■□□□□ 0.84
LSM1-204ENST00000522515 TAF1P21675 1872 aa20.27■□□□□ 0.84
LSM1-204ENST00000522515 ANKRD18BA2A2Z9 1011 aa20.27■□□□□ 0.84
LSM1-204ENST00000522515 HOXA10P31260 410 aaPredicted RBP20.27■□□□□ 0.84
LSM1-204ENST00000522515 DDX46Q7L014 1031 aaKnown RBP20.27■□□□□ 0.84
LSM1-204ENST00000522515 KLHDC4Q8TBB5 520 aa20.27■□□□□ 0.84
LSM1-204ENST00000522515 ZNF594Q96JF6 807 aaPredicted RBP20.27■□□□□ 0.84
LSM1-204ENST00000522515 KIAA1551Q9HCM1 1747 aa20.27■□□□□ 0.83
LSM1-204ENST00000522515 NPR1P16066 1061 aa20.26■□□□□ 0.83
LSM1-204ENST00000522515 TGFB2P61812 414 aa20.26■□□□□ 0.83
LSM1-204ENST00000522515 MASTLQ96GX5 879 aa20.26■□□□□ 0.83
LSM1-204ENST00000522515 RBM17Q96I25 401 aaKnown RBP20.26■□□□□ 0.83
LSM1-204ENST00000522515 PDZRN3Q9UPQ7 1066 aa20.26■□□□□ 0.83
LSM1-204ENST00000522515 A0A0G2JLW4 131 aa20.25■□□□□ 0.83
LSM1-204ENST00000522515 DPEP1P16444 411 aa20.25■□□□□ 0.83
LSM1-204ENST00000522515 PTPN12Q05209 780 aaKnown RBP20.25■□□□□ 0.83
LSM1-204ENST00000522515 CELF1Q92879 486 aaKnown RBP20.25■□□□□ 0.83
LSM1-204ENST00000522515 PA2G4Q9UQ80 394 aaKnown RBP20.25■□□□□ 0.83
LSM1-204ENST00000522515 HMMRO75330 724 aa20.25■□□□□ 0.83
LSM1-204ENST00000522515 CRAMP1Q96RY5 1269 aa20.25■□□□□ 0.83
LSM1-204ENST00000522515 KCNA3P22001 575 aa20.24■□□□□ 0.83
LSM1-204ENST00000522515 ZNF622Q969S3 477 aaKnown RBP eCLIP20.24■□□□□ 0.83
LSM1-204ENST00000522515 CDC5LQ99459 802 aaKnown RBP20.24■□□□□ 0.83
LSM1-204ENST00000522515 FHDC1Q9C0D6 1143 aaPredicted RBP20.24■□□□□ 0.83
LSM1-204ENST00000522515 IGHDP01880 384 aa20.23■□□□□ 0.83
LSM1-204ENST00000522515 HDAC1Q13547 482 aaPredicted RBP20.23■□□□□ 0.83
LSM1-204ENST00000522515 GRAPQ13588 217 aa20.23■□□□□ 0.83
LSM1-204ENST00000522515 TAF7LQ5H9L4 462 aa20.23■□□□□ 0.83
LSM1-204ENST00000522515 STYK1Q6J9G0 422 aa20.23■□□□□ 0.83
LSM1-204ENST00000522515 GRAPLQ8TC17 118 aaPredicted RBP20.23■□□□□ 0.83
LSM1-204ENST00000522515 COPRSQ9NQ92 184 aa20.23■□□□□ 0.83
LSM1-204ENST00000522515 DLEC1Q9Y238 1755 aa20.23■□□□□ 0.83
LSM1-204ENST00000522515 ALDH1B1P30837 517 aa20.22■□□□□ 0.83
LSM1-204ENST00000522515 RPS8P62241 208 aaKnown RBP20.22■□□□□ 0.83
LSM1-204ENST00000522515 ANKRD18AQ8IVF6 992 aa20.22■□□□□ 0.83
LSM1-204ENST00000522515 NLGN2Q8NFZ4 835 aa20.22■□□□□ 0.83
LSM1-204ENST00000522515 SIL1Q9H173 461 aa20.22■□□□□ 0.83
LSM1-204ENST00000522515 LRP5O75197 1615 aa20.22■□□□□ 0.83
LSM1-204ENST00000522515 SRCAPQ6ZRS2 3230 aa20.22■□□□□ 0.83
LSM1-204ENST00000522515 PUS3Q9BZE2 481 aaKnown RBP20.21■□□□□ 0.83
LSM1-204ENST00000522515 RWDD1Q9H446 243 aaPredicted RBP20.21■□□□□ 0.83
LSM1-204ENST00000522515 SPEF2Q9C093 1822 aa20.21■□□□□ 0.83
LSM1-204ENST00000522515 SURF6O75683 361 aaKnown RBP20.21■□□□□ 0.83
LSM1-204ENST00000522515 IGHMBP2P38935 993 aaKnown RBP20.21■□□□□ 0.83
LSM1-204ENST00000522515 LDHAL6AQ6ZMR3 332 aa20.21■□□□□ 0.83
LSM1-204ENST00000522515 PPP4R2Q9NY27 417 aa20.21■□□□□ 0.83
LSM1-204ENST00000522515 GTF3C3Q9Y5Q9 886 aa20.21■□□□□ 0.83
LSM1-204ENST00000522515 LRRC24Q50LG9 513 aa20.2■□□□□ 0.82
LSM1-204ENST00000522515 MPHOSPH8Q99549 860 aa20.2■□□□□ 0.82
LSM1-204ENST00000522515 SYT17Q9BSW7 474 aa20.2■□□□□ 0.82
LSM1-204ENST00000522515 EXOC6BQ9Y2D4 811 aa20.2■□□□□ 0.82
LSM1-204ENST00000522515 NOP58Q9Y2X3 529 aaKnown RBP20.2■□□□□ 0.82
LSM1-204ENST00000522515 CACNA1SQ13698 1873 aa20.19■□□□□ 0.82
LSM1-204ENST00000522515 EYA2O00167 538 aa20.19■□□□□ 0.82
LSM1-204ENST00000522515 BBOX1O75936 387 aa20.19■□□□□ 0.82
LSM1-204ENST00000522515 SLC51AQ86UW1 340 aa20.19■□□□□ 0.82
LSM1-204ENST00000522515 CNKSR1Q969H4 720 aa20.19■□□□□ 0.82
LSM1-204ENST00000522515 DCTPP1Q9H773 170 aa20.19■□□□□ 0.82
LSM1-204ENST00000522515 BSDC1Q9NW68 430 aaPredicted RBP20.19■□□□□ 0.82
LSM1-204ENST00000522515 PRPF40BQ6NWY9 871 aaKnown RBP20.18■□□□□ 0.82
LSM1-204ENST00000522515 ATG9AQ7Z3C6 839 aa20.18■□□□□ 0.82
LSM1-204ENST00000522515 CCDC136Q96JN2 1154 aa20.18■□□□□ 0.82
LSM1-204ENST00000522515 CNNM1Q9NRU3 951 aa20.18■□□□□ 0.82
LSM1-204ENST00000522515 PIM2Q9P1W9 311 aa20.18■□□□□ 0.82
LSM1-204ENST00000522515 SLX4Q8IY92 1834 aa20.17■□□□□ 0.82
LSM1-204ENST00000522515 PPEF1O14829 653 aaPredicted RBP20.17■□□□□ 0.82
LSM1-204ENST00000522515 B4GALNT3Q6L9W6 998 aa20.17■□□□□ 0.82
LSM1-204ENST00000522515 TTLL6Q8N841 843 aa20.17■□□□□ 0.82
LSM1-204ENST00000522515 FBXO3Q9UK99 471 aa20.17■□□□□ 0.82
LSM1-204ENST00000522515 WWC3Q9ULE0 1092 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms