RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 C2CD2LO14523 706 aa11.51□□□□□ -0.57
SDCBP-208ENST00000520228 NDUFB5O43674 189 aa11.51□□□□□ -0.57
SDCBP-208ENST00000520228 MARSP56192 900 aaKnown RBP11.51□□□□□ -0.57
SDCBP-208ENST00000520228 CCDC27Q2M243 656 aa11.51□□□□□ -0.57
SDCBP-208ENST00000520228 IRF7Q92985 503 aa11.51□□□□□ -0.57
SDCBP-208ENST00000520228 ZNF775Q96BV0 537 aaPredicted RBP11.51□□□□□ -0.57
SDCBP-208ENST00000520228 GSX2Q9BZM3 304 aa11.51□□□□□ -0.57
SDCBP-208ENST00000520228 GGNBP2Q9H3C7 697 aa11.51□□□□□ -0.57
SDCBP-208ENST00000520228 TARBP1Q13395 1621 aaKnown RBP11.5□□□□□ -0.57
SDCBP-208ENST00000520228 USP5P45974 858 aa11.5□□□□□ -0.57
SDCBP-208ENST00000520228 RNFT1Q5M7Z0 435 aa11.5□□□□□ -0.57
SDCBP-208ENST00000520228 FAM129BQ96TA1 746 aa11.5□□□□□ -0.57
SDCBP-208ENST00000520228 SLC30A3Q99726 388 aa11.5□□□□□ -0.57
SDCBP-208ENST00000520228 RPLP1P05386 114 aaKnown RBP11.49□□□□□ -0.57
SDCBP-208ENST00000520228 COL25A1Q9BXS0 654 aaPredicted RBP11.49□□□□□ -0.57
SDCBP-208ENST00000520228 XYLBO75191 536 aa11.48□□□□□ -0.57
SDCBP-208ENST00000520228 MAPK1P28482 360 aa11.48□□□□□ -0.57
SDCBP-208ENST00000520228 KRT76Q01546 638 aa11.48□□□□□ -0.57
SDCBP-208ENST00000520228 SPEM2Q0P670 501 aa11.48□□□□□ -0.57
SDCBP-208ENST00000520228 CCINQ13939 588 aa11.48□□□□□ -0.57
SDCBP-208ENST00000520228 LCE2AQ5TA79 106 aaPredicted RBP11.48□□□□□ -0.57
SDCBP-208ENST00000520228 XKR5Q6UX68 686 aa11.48□□□□□ -0.57
SDCBP-208ENST00000520228 DNAJC14Q6Y2X3 702 aaPredicted RBP11.48□□□□□ -0.57
SDCBP-208ENST00000520228 MBIPQ9NS73 344 aa11.48□□□□□ -0.57
SDCBP-208ENST00000520228 PCSK2P16519 638 aa11.47□□□□□ -0.57
SDCBP-208ENST00000520228 MX2P20592 715 aa11.47□□□□□ -0.57
SDCBP-208ENST00000520228 ASB16Q96NS5 453 aa11.47□□□□□ -0.57
SDCBP-208ENST00000520228 EFCC1Q9HA90 598 aa11.47□□□□□ -0.57
SDCBP-208ENST00000520228 FNDC3AQ9Y2H6 1198 aaKnown RBP11.47□□□□□ -0.57
SDCBP-208ENST00000520228 UBAP1LF5GYI3 381 aa11.46□□□□□ -0.57
SDCBP-208ENST00000520228 WFS1O76024 890 aa11.46□□□□□ -0.57
SDCBP-208ENST00000520228 MFAP1P55081 439 aaKnown RBP11.46□□□□□ -0.57
SDCBP-208ENST00000520228 PDE12Q6L8Q7 609 aaKnown RBP11.46□□□□□ -0.57
SDCBP-208ENST00000520228 TMC7Q7Z402 723 aa11.46□□□□□ -0.57
SDCBP-208ENST00000520228 EIF4G3O43432 1585 aaKnown RBP11.45□□□□□ -0.58
SDCBP-208ENST00000520228 A6NHS1 94 aa11.45□□□□□ -0.58
SDCBP-208ENST00000520228 EHHADHQ08426 723 aa11.45□□□□□ -0.58
SDCBP-208ENST00000520228 PODXL2Q9NZ53 605 aa11.45□□□□□ -0.58
SDCBP-208ENST00000520228 TOP2BQ02880 1626 aa11.45□□□□□ -0.58
SDCBP-208ENST00000520228 SYNJ1O43426 1573 aa11.45□□□□□ -0.58
SDCBP-208ENST00000520228 ABCA10Q8WWZ4 1543 aa11.45□□□□□ -0.58
SDCBP-208ENST00000520228 BMP4P12644 408 aa11.44□□□□□ -0.58
SDCBP-208ENST00000520228 TREML4Q6UXN2 200 aa11.44□□□□□ -0.58
SDCBP-208ENST00000520228 ZFATQ9P243 1243 aa11.44□□□□□ -0.58
SDCBP-208ENST00000520228 GPR182O15218 404 aa11.43□□□□□ -0.58
SDCBP-208ENST00000520228 SASH3O75995 380 aa11.43□□□□□ -0.58
SDCBP-208ENST00000520228 TARSP26639 723 aaKnown RBP11.43□□□□□ -0.58
SDCBP-208ENST00000520228 PDE3BQ13370 1112 aa11.43□□□□□ -0.58
SDCBP-208ENST00000520228 C8orf34Q49A92 452 aa11.43□□□□□ -0.58
SDCBP-208ENST00000520228 NLRP13Q86W25 1043 aa11.43□□□□□ -0.58
SDCBP-208ENST00000520228 ALKBH8Q96BT7 664 aaKnown RBP11.43□□□□□ -0.58
SDCBP-208ENST00000520228 DMRTB1Q96MA1 342 aa11.43□□□□□ -0.58
SDCBP-208ENST00000520228 GRIN2BQ13224 1484 aa11.43□□□□□ -0.58
SDCBP-208ENST00000520228 GAPVD1Q14C86 1478 aa11.43□□□□□ -0.58
SDCBP-208ENST00000520228 ZNF468Q5VIY5 522 aaPredicted RBP11.42□□□□□ -0.58
SDCBP-208ENST00000520228 ZSCAN29Q8IWY8 852 aaPredicted RBP11.42□□□□□ -0.58
SDCBP-208ENST00000520228 AVENQ9NQS1 362 aaPredicted RBP11.42□□□□□ -0.58
SDCBP-208ENST00000520228 IGF1RP08069 1367 aa11.41□□□□□ -0.58
SDCBP-208ENST00000520228 MAP3K6O95382 1288 aa11.41□□□□□ -0.58
SDCBP-208ENST00000520228 GMPRP36959 345 aa11.41□□□□□ -0.58
SDCBP-208ENST00000520228 MAP2K3P46734 347 aa11.41□□□□□ -0.58
SDCBP-208ENST00000520228 SRSF11Q05519 484 aaKnown RBP11.41□□□□□ -0.58
SDCBP-208ENST00000520228 DSC3Q14574 896 aa11.41□□□□□ -0.58
SDCBP-208ENST00000520228 RAB44Q7Z6P3 723 aaPredicted RBP11.41□□□□□ -0.58
SDCBP-208ENST00000520228 ELP3Q9H9T3 547 aa11.41□□□□□ -0.58
SDCBP-208ENST00000520228 TMEM63CQ9P1W3 806 aa11.41□□□□□ -0.58
SDCBP-208ENST00000520228 KLF15Q9UIH9 416 aa11.41□□□□□ -0.58
SDCBP-208ENST00000520228 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.41□□□□□ -0.58
SDCBP-208ENST00000520228 WDR97A6NE52 1622 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 BIVM-ERCC5R4GMW8 1640 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 TREHO43280 583 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 ARAFP10398 606 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 NFKB1P19838 968 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 ZNF438Q7Z4V0 828 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 BHMTQ93088 406 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 CNTNAP3BQ96NU0 1288 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 CNTNAP3Q9BZ76 1288 aa11.4□□□□□ -0.58
SDCBP-208ENST00000520228 SNAPC4Q5SXM2 1469 aa11.39□□□□□ -0.59
SDCBP-208ENST00000520228 ANKRD33BA6NCL7 494 aa11.39□□□□□ -0.59
SDCBP-208ENST00000520228 TNFRSF21O75509 655 aa11.39□□□□□ -0.59
SDCBP-208ENST00000520228 KRT25Q7Z3Z0 450 aa11.39□□□□□ -0.59
SDCBP-208ENST00000520228 SYT9Q86SS6 491 aa11.39□□□□□ -0.59
SDCBP-208ENST00000520228 TTC16Q8NEE8 873 aa11.39□□□□□ -0.59
SDCBP-208ENST00000520228 PRR12Q9ULL5 1215 aa11.39□□□□□ -0.59
SDCBP-208ENST00000520228 NSFL1CQ9UNZ2 370 aaKnown RBP11.39□□□□□ -0.59
SDCBP-208ENST00000520228 SIN3BO75182 1162 aa11.38□□□□□ -0.59
SDCBP-208ENST00000520228 SLURP2P0DP57 97 aa11.38□□□□□ -0.59
SDCBP-208ENST00000520228 ERCC3P19447 782 aa11.38□□□□□ -0.59
SDCBP-208ENST00000520228 TMC1Q8TDI8 760 aa11.38□□□□□ -0.59
SDCBP-208ENST00000520228 PNMA5Q96PV4 448 aa11.38□□□□□ -0.59
SDCBP-208ENST00000520228 MDFIQ99750 246 aa11.38□□□□□ -0.59
SDCBP-208ENST00000520228 MAGI1Q96QZ7 1491 aaPredicted RBP11.38□□□□□ -0.59
SDCBP-208ENST00000520228 MMP20O60882 483 aa11.37□□□□□ -0.59
SDCBP-208ENST00000520228 RARAP10276 462 aa11.37□□□□□ -0.59
SDCBP-208ENST00000520228 NEUROD1Q13562 356 aa11.37□□□□□ -0.59
SDCBP-208ENST00000520228 NPAS4Q8IUM7 802 aa11.37□□□□□ -0.59
SDCBP-208ENST00000520228 ABI2Q9NYB9 513 aaPredicted RBP11.37□□□□□ -0.59
SDCBP-208ENST00000520228 CCDC9Q9Y3X0 531 aaKnown RBP11.37□□□□□ -0.59
SDCBP-208ENST00000520228 HOXD8P13378 290 aaPredicted RBP11.36□□□□□ -0.59
SDCBP-208ENST00000520228 PCBP4P57723 403 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms