RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 IGHA2P01877 340 aa8.66□□□□□ -1.02
CPNE3-202ENST00000517391 PDGFAP04085 211 aa8.66□□□□□ -1.02
CPNE3-202ENST00000517391 NEFLP07196 543 aa8.66□□□□□ -1.02
CPNE3-202ENST00000517391 COL8A1P27658 744 aa8.66□□□□□ -1.02
CPNE3-202ENST00000517391 RIPOR1Q6ZS17 1223 aa8.66□□□□□ -1.02
CPNE3-202ENST00000517391 EDEM1Q92611 657 aa8.66□□□□□ -1.02
CPNE3-202ENST00000517391 TRERF1Q96PN7 1200 aa8.66□□□□□ -1.02
CPNE3-202ENST00000517391 ZCCHC6Q5VYS8 1495 aaKnown RBP8.65□□□□□ -1.02
CPNE3-202ENST00000517391 KRTAP4-8A0A0G2JLE6 195 aa8.65□□□□□ -1.02
CPNE3-202ENST00000517391 LDHBP07195 334 aaKnown RBP8.65□□□□□ -1.02
CPNE3-202ENST00000517391 TCF3P15923 654 aa8.65□□□□□ -1.02
CPNE3-202ENST00000517391 MAPK8P45983 427 aa8.65□□□□□ -1.02
CPNE3-202ENST00000517391 ATP2B2Q01814 1243 aa8.65□□□□□ -1.02
CPNE3-202ENST00000517391 XPCQ01831 940 aaPredicted RBP8.65□□□□□ -1.02
CPNE3-202ENST00000517391 C7orf43Q8WVR3 580 aa8.65□□□□□ -1.02
CPNE3-202ENST00000517391 DYRK1BQ9Y463 629 aa8.65□□□□□ -1.02
CPNE3-202ENST00000517391 UNC13AQ9UPW8 1703 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 TGFBR3LH3BV60 316 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 GPR182O15218 404 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 PRPF40AO75400 957 aaKnown RBP8.64□□□□□ -1.03
CPNE3-202ENST00000517391 MICAL2O94851 1124 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 ITGB7P26010 798 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 IER5Q5VY09 327 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 PIK3R5Q8WYR1 880 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 NIF3L1Q9GZT8 377 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 SEMA6BQ9H3T3 888 aa8.64□□□□□ -1.03
CPNE3-202ENST00000517391 H7C1W4 665 aa8.63□□□□□ -1.03
CPNE3-202ENST00000517391 MX2P20592 715 aa8.63□□□□□ -1.03
CPNE3-202ENST00000517391 GPR152Q8TDT2 470 aa8.63□□□□□ -1.03
CPNE3-202ENST00000517391 SUSD3Q96L08 255 aa8.63□□□□□ -1.03
CPNE3-202ENST00000517391 GPAMQ9HCL2 828 aa8.63□□□□□ -1.03
CPNE3-202ENST00000517391 NEUROD4Q9HD90 331 aa8.63□□□□□ -1.03
CPNE3-202ENST00000517391 BCS1LQ9Y276 419 aa8.63□□□□□ -1.03
CPNE3-202ENST00000517391 F11P03951 625 aa8.62□□□□□ -1.03
CPNE3-202ENST00000517391 DBN1Q16643 649 aa8.62□□□□□ -1.03
CPNE3-202ENST00000517391 ALG1LQ6GMV1 187 aa8.62□□□□□ -1.03
CPNE3-202ENST00000517391 BICDL1Q6ZP65 573 aa8.62□□□□□ -1.03
CPNE3-202ENST00000517391 C1QTNF9BB2RNN3 333 aa8.61□□□□□ -1.03
CPNE3-202ENST00000517391 PIK3R2O00459 728 aa8.61□□□□□ -1.03
CPNE3-202ENST00000517391 GRIN2CQ14957 1233 aa8.61□□□□□ -1.03
CPNE3-202ENST00000517391 ENOX2Q16206 610 aaKnown RBP8.61□□□□□ -1.03
CPNE3-202ENST00000517391 GTPBP3Q969Y2 492 aaKnown RBP8.61□□□□□ -1.03
CPNE3-202ENST00000517391 NUDT16Q96DE0 195 aaKnown RBP8.61□□□□□ -1.03
CPNE3-202ENST00000517391 OXCT2Q9BYC2 517 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-202ENST00000517391 MAP2K3P46734 347 aa8.6□□□□□ -1.03
CPNE3-202ENST00000517391 C8orf34Q49A92 452 aa8.6□□□□□ -1.03
CPNE3-202ENST00000517391 TMC4Q7Z404 712 aa8.6□□□□□ -1.03
CPNE3-202ENST00000517391 DNAJC25Q9H1X3 360 aa8.6□□□□□ -1.03
CPNE3-202ENST00000517391 RRAGCQ9HB90 399 aa8.6□□□□□ -1.03
CPNE3-202ENST00000517391 MRS2Q9HD23 443 aa8.6□□□□□ -1.03
CPNE3-202ENST00000517391 PARP2Q9UGN5 583 aa8.6□□□□□ -1.03
CPNE3-202ENST00000517391 DMGDHQ9UI17 866 aaKnown RBP8.6□□□□□ -1.03
CPNE3-202ENST00000517391 FNDC3AQ9Y2H6 1198 aaKnown RBP8.6□□□□□ -1.03
CPNE3-202ENST00000517391 A0A1B0GTH6 734 aa8.59□□□□□ -1.03
CPNE3-202ENST00000517391 SCO2A0A1W2PP80 73 aa8.59□□□□□ -1.03
CPNE3-202ENST00000517391 OPLAHO14841 1288 aa8.59□□□□□ -1.03
CPNE3-202ENST00000517391 MSX1P28360 303 aa8.59□□□□□ -1.03
CPNE3-202ENST00000517391 ARSDP51689 593 aa8.59□□□□□ -1.03
CPNE3-202ENST00000517391 MRPL58Q14197 206 aaKnown RBP8.59□□□□□ -1.03
CPNE3-202ENST00000517391 TSNAXIP1Q2TAA8 658 aa8.59□□□□□ -1.03
CPNE3-202ENST00000517391 FBF1Q8TES7 1133 aa8.59□□□□□ -1.03
CPNE3-202ENST00000517391 FRMD6Q96NE9 622 aa8.59□□□□□ -1.03
CPNE3-202ENST00000517391 DUSP9Q99956 384 aaKnown RBP8.59□□□□□ -1.03
CPNE3-202ENST00000517391 RECKO95980 971 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 IDH3AP50213 366 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 DAB2P98082 770 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 ARSJQ5FYB0 599 aaPredicted RBP8.58□□□□□ -1.04
CPNE3-202ENST00000517391 XKR5Q6UX68 686 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 CD163Q86VB7 1156 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 ZNF280CQ8ND82 737 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 CSRNP1Q96S65 589 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 ZIC5Q96T25 663 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 GGNBP2Q9H3C7 697 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 RUBCNLQ9H714 662 aa8.58□□□□□ -1.04
CPNE3-202ENST00000517391 PNMA6FA0A0J9YX94 578 aa8.57□□□□□ -1.04
CPNE3-202ENST00000517391 SORBS3O60504 671 aa8.57□□□□□ -1.04
CPNE3-202ENST00000517391 PSMD2Q13200 908 aa8.57□□□□□ -1.04
CPNE3-202ENST00000517391 BACH2Q9BYV9 841 aa8.57□□□□□ -1.04
CPNE3-202ENST00000517391 NUCKS1Q9H1E3 243 aaKnown RBP8.57□□□□□ -1.04
CPNE3-202ENST00000517391 WWC3Q9ULE0 1092 aa8.57□□□□□ -1.04
CPNE3-202ENST00000517391 SHISA8B8ZZ34 492 aa8.56□□□□□ -1.04
CPNE3-202ENST00000517391 SCAMP3O14828 347 aaKnown RBP8.56□□□□□ -1.04
CPNE3-202ENST00000517391 EPB42P16452 691 aa8.56□□□□□ -1.04
CPNE3-202ENST00000517391 ATP4AP20648 1035 aa8.56□□□□□ -1.04
CPNE3-202ENST00000517391 INPP5BP32019 993 aa8.56□□□□□ -1.04
CPNE3-202ENST00000517391 PDE12Q6L8Q7 609 aaKnown RBP8.56□□□□□ -1.04
CPNE3-202ENST00000517391 BTLAQ7Z6A9 289 aa8.56□□□□□ -1.04
CPNE3-202ENST00000517391 HSH2DQ96JZ2 352 aa8.56□□□□□ -1.04
CPNE3-202ENST00000517391 C11orf16Q9NQ32 467 aa8.56□□□□□ -1.04
CPNE3-202ENST00000517391 EIF1AYO14602 144 aaKnown RBP8.55□□□□□ -1.04
CPNE3-202ENST00000517391 THBS1P07996 1170 aa8.55□□□□□ -1.04
CPNE3-202ENST00000517391 KRTAP19-1Q8IUB9 90 aa8.55□□□□□ -1.04
CPNE3-202ENST00000517391 PGBD3Q8N328 593 aa8.55□□□□□ -1.04
CPNE3-202ENST00000517391 GOLGA2P5Q9HBQ8 144 aa8.55□□□□□ -1.04
CPNE3-202ENST00000517391 RTCBQ9Y3I0 505 aaKnown RBP8.55□□□□□ -1.04
CPNE3-202ENST00000517391 GJA3Q9Y6H8 435 aa8.55□□□□□ -1.04
CPNE3-202ENST00000517391 SHROOM4Q9ULL8 1493 aa8.55□□□□□ -1.04
CPNE3-202ENST00000517391 BICRAQ9NZM4 1560 aa8.54□□□□□ -1.04
CPNE3-202ENST00000517391 A0A1W2PNR3 127 aa8.54□□□□□ -1.04
CPNE3-202ENST00000517391 CPNE3O75131 537 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms